Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4973

Experiment: Citric Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C)
5,896,202	-				+1.2
5,896,297	-		Psyr_4972	0.19	+0.6
5,896,338	+		Psyr_4972	0.22	-0.1
5,896,338	+		Psyr_4972	0.22	+0.4
5,896,347	-		Psyr_4972	0.23	+1.0
5,896,373	-		Psyr_4972	0.26	+2.0
5,896,373	-		Psyr_4972	0.26	-1.8
5,896,376	+		Psyr_4972	0.26	+0.3
5,896,376	+		Psyr_4972	0.26	+2.2
5,896,377	-		Psyr_4972	0.26	+0.7
5,896,377	-		Psyr_4972	0.26	+0.3
5,896,377	-		Psyr_4972	0.26	+2.4
5,896,377	-		Psyr_4972	0.26	+0.9
5,896,377	-		Psyr_4972	0.26	+2.2
5,896,514	+		Psyr_4972	0.40	+0.4
5,896,514	+		Psyr_4972	0.40	+0.2
5,896,519	-		Psyr_4972	0.40	+0.6
5,896,525	-		Psyr_4972	0.41	-0.6
5,896,548	+				-0.2
5,896,553	-		Psyr_4972	0.43	+3.6
5,896,553	-		Psyr_4972	0.43	+0.9
5,896,553	-		Psyr_4972	0.43	+0.7
5,896,565	+		Psyr_4972	0.44	+1.1
5,896,607	+		Psyr_4972	0.49	-0.6
5,896,610	+		Psyr_4972	0.49	-0.1
5,896,610	+		Psyr_4972	0.49	-0.3
5,896,611	-		Psyr_4972	0.49	+0.2
5,896,611	-		Psyr_4972	0.49	-0.4
5,896,612	+		Psyr_4972	0.49	-1.8
5,896,654	-		Psyr_4972	0.53	+0.4
5,896,667	+		Psyr_4972	0.54	+1.4
5,896,667	+		Psyr_4972	0.54	-0.6
5,896,667	+		Psyr_4972	0.54	+0.3
5,896,713	-		Psyr_4972	0.59	+2.1
5,896,734	+		Psyr_4972	0.61	+0.4
5,896,735	-		Psyr_4972	0.61	+0.7
5,896,777	+		Psyr_4972	0.65	-0.9
5,896,914	+		Psyr_4972	0.78	+0.9
5,896,917	+		Psyr_4972	0.79	-0.5
5,896,917	+		Psyr_4972	0.79	-0.0
5,896,918	-		Psyr_4972	0.79	-0.0
5,897,104	+				-1.2
5,897,146	+				-1.2
5,897,146	+				+0.4
5,897,147	-				+0.5
5,897,189	+				-0.3
5,897,221	+				+0.2
5,897,221	+				-2.5
5,897,221	+				-0.6
5,897,221	+				-0.1
5,897,221	+				+2.0
5,897,221	+				-0.6
5,897,222	-				-0.9
5,897,222	-				-0.8
5,897,222	-				+1.6
5,897,222	-				+0.7
5,897,225	+				+1.9
5,897,225	+				-2.2
5,897,225	+				-1.6
5,897,225	+				+0.5
5,897,225	+				-2.2
5,897,225	+				-0.1
5,897,225	+				-0.7
5,897,225	+				-2.6
5,897,226	-				+0.3
5,897,226	-				+0.4
5,897,358	+		Psyr_4973	0.14	+0.7
5,897,358	+		Psyr_4973	0.14	-0.2
5,897,358	+		Psyr_4973	0.14	-1.9
5,897,359	-		Psyr_4973	0.15	-0.3
5,897,359	-		Psyr_4973	0.15	-2.9
5,897,359	-		Psyr_4973	0.15	-0.7
5,897,470	+		Psyr_4973	0.25	-0.3
5,897,471	-		Psyr_4973	0.25	+1.1
5,897,602	+		Psyr_4973	0.37	-1.6
5,897,602	+		Psyr_4973	0.37	+0.5
5,897,602	+		Psyr_4973	0.37	-2.6
5,897,602	+		Psyr_4973	0.37	-0.7
5,897,602	+		Psyr_4973	0.37	-0.6
5,897,603	-		Psyr_4973	0.37	-1.3
5,897,603	-		Psyr_4973	0.37	+1.7
5,897,608	+		Psyr_4973	0.38	+0.5
5,897,608	+		Psyr_4973	0.38	+0.4
5,897,675	+		Psyr_4973	0.44	-0.2
5,897,676	-		Psyr_4973	0.44	-0.1
5,897,678	+		Psyr_4973	0.44	-0.6
5,897,678	+		Psyr_4973	0.44	-3.3
5,897,679	-		Psyr_4973	0.44	+0.7
5,897,741	+		Psyr_4973	0.50	-0.6
5,897,742	-		Psyr_4973	0.50	+0.4
5,897,754	-		Psyr_4973	0.51	-0.8
5,897,777	-		Psyr_4973	0.53	-0.3
5,897,940	-		Psyr_4973	0.68	-1.9
5,897,940	-		Psyr_4973	0.68	+0.6
5,897,991	+		Psyr_4973	0.73	-2.3
5,897,991	+		Psyr_4973	0.73	+1.5
5,897,991	+		Psyr_4973	0.73	-0.5
5,897,992	-		Psyr_4973	0.73	+1.0
5,897,992	-		Psyr_4973	0.73	+0.1
5,898,084	-		Psyr_4973	0.82	-0.6
5,898,149	-		Psyr_4973	0.88	-1.0
5,898,312	+				+0.9
5,898,312	+				-0.0
5,898,312	+				+0.7
5,898,312	+				-0.4
5,898,312	+				-0.0
5,898,312	+				+1.1
5,898,312	+				-1.2
5,898,312	+				+0.9
5,898,312	+				+0.1
5,898,312	+				-0.3
5,898,312	+				-3.1
5,898,312	+				+0.9
5,898,312	+				+1.8
5,898,312	+				+0.4
5,898,312	+				+1.1
5,898,312	+				-3.1
5,898,312	+				+0.1
5,898,312	+				-1.0
5,898,312	+				-1.3
5,898,312	+				+1.8
5,898,312	+				-0.0
5,898,312	+				-0.4
5,898,313	-				-0.1
5,898,313	-				+0.2
5,898,313	-				+0.1
5,898,313	-				+1.4
5,898,313	-				+0.4
5,898,313	-				+0.4
5,898,313	-				+1.7
5,898,313	-				-1.1
5,898,313	-				-2.6
5,898,313	-				+2.4
5,898,313	-				+1.5
5,898,313	-				-0.8
5,898,313	-				+0.1
5,898,313	-				-0.7
5,898,313	-				-0.8
5,898,313	-				-1.6
5,898,313	-				-0.0
5,898,313	-				-1.6
5,898,313	-				-0.3
5,898,313	-				-2.9
5,898,313	-				-1.3
5,898,313	-				-0.3
5,898,313	-				-0.4
5,898,313	-				+0.3
5,898,313	-				-3.4
5,898,313	-				+0.6
5,898,313	-				-2.9
5,898,313	-				-1.0
5,898,313	-				+0.1
5,898,313	-				+1.3
5,898,316	+				-0.4
5,898,316	+				+1.9
5,898,316	+				-0.6
5,898,316	+				-0.2
5,898,317	-				+0.5
5,898,317	-				+1.4
5,898,317	-				-0.2
5,898,317	-				+1.7
5,898,665	+		Psyr_4974	0.12	+0.2
5,898,666	-		Psyr_4974	0.12	+1.4
5,898,670	+		Psyr_4974	0.12	+1.4
5,898,671	-		Psyr_4974	0.12	-0.0
5,898,734	+		Psyr_4974	0.14	-0.9
5,898,735	-		Psyr_4974	0.15	-1.3
5,898,735	-		Psyr_4974	0.15	+1.0
5,898,735	-		Psyr_4974	0.15	-0.8
5,898,756	-		Psyr_4974	0.15	-1.8
5,898,779	+		Psyr_4974	0.16	-1.2
5,898,794	+		Psyr_4974	0.17	+0.9
5,898,794	+		Psyr_4974	0.17	+1.4
5,898,794	+		Psyr_4974	0.17	+0.5
5,898,794	+		Psyr_4974	0.17	-0.8
5,898,794	+		Psyr_4974	0.17	+0.1
5,898,794	+		Psyr_4974	0.17	+0.9
5,898,794	+		Psyr_4974	0.17	+0.0
5,898,794	+		Psyr_4974	0.17	-0.3
5,898,794	+		Psyr_4974	0.17	+3.6
5,898,795	-		Psyr_4974	0.17	+2.0
5,898,795	-		Psyr_4974	0.17	+1.7
5,898,795	-		Psyr_4974	0.17	+1.4
5,898,795	-		Psyr_4974	0.17	+0.9
5,898,867	-		Psyr_4974	0.19	-0.4
5,899,136	+		Psyr_4974	0.28	+1.1
5,899,148	+		Psyr_4974	0.29	-1.4