Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4575

Experiment: Citric Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C)
5,437,106	+		Psyr_4573	0.55	+1.6
5,437,106	+		Psyr_4573	0.55	-0.5
5,437,106	+		Psyr_4573	0.55	-0.7
5,437,106	+		Psyr_4573	0.55	-1.6
5,437,106	+		Psyr_4573	0.55	-0.3
5,437,106	+		Psyr_4573	0.55	-1.9
5,437,106	+		Psyr_4573	0.55	+1.4
5,437,106	+		Psyr_4573	0.55	-1.1
5,437,106	+		Psyr_4573	0.55	-0.3
5,437,106	+		Psyr_4573	0.55	-1.6
5,437,106	+		Psyr_4573	0.55	-1.2
5,437,106	+		Psyr_4573	0.55	-0.3
5,437,106	+		Psyr_4573	0.55	-1.3
5,437,106	+		Psyr_4573	0.55	-0.7
5,437,106	+		Psyr_4573	0.55	+0.7
5,437,106	+		Psyr_4573	0.55	-0.1
5,437,107	-		Psyr_4573	0.55	+0.3
5,437,107	-		Psyr_4573	0.55	-1.6
5,437,107	-		Psyr_4573	0.55	-2.2
5,437,107	-		Psyr_4573	0.55	+0.3
5,437,107	-		Psyr_4573	0.55	+1.4
5,437,107	-		Psyr_4573	0.55	+0.3
5,437,222	+		Psyr_4573	0.89	-1.3
5,437,222	+		Psyr_4573	0.89	-1.5
5,437,222	+		Psyr_4573	0.89	+0.9
5,437,222	+		Psyr_4573	0.89	-0.3
5,437,222	+		Psyr_4573	0.89	+1.0
5,437,222	+		Psyr_4573	0.89	-1.0
5,437,222	+		Psyr_4573	0.89	-0.1
5,437,222	+		Psyr_4573	0.89	-0.5
5,437,223	-		Psyr_4573	0.89	-1.6
5,437,223	-		Psyr_4573	0.89	+1.0
5,437,223	-		Psyr_4573	0.89	-1.1
5,437,223	-		Psyr_4573	0.89	+0.2
5,437,223	-		Psyr_4573	0.89	+1.1
5,437,223	-		Psyr_4573	0.89	-0.1
5,437,223	-		Psyr_4573	0.89	-0.3
5,437,223	-		Psyr_4573	0.89	-0.5
5,438,036	+				+1.4
5,438,036	+				-0.4
5,438,036	+				+2.1
5,438,036	+				-0.3
5,438,036	+				+1.2
5,438,036	+				+0.7
5,438,036	+				-0.6
5,438,036	+				-0.4
5,438,036	+				-1.3
5,438,036	+				+1.0
5,438,036	+				+1.1
5,438,036	+				+0.0
5,438,036	+				-0.6
5,438,036	+				-1.3
5,438,036	+				+0.3
5,438,036	+				-0.3
5,438,036	+				+0.0
5,438,037	-				+2.8
5,438,037	-				+0.4
5,438,037	-				+1.3
5,438,037	-				+0.9
5,438,037	-				+1.9
5,438,037	-				+0.4
5,438,037	-				-1.0
5,438,037	-				+2.0
5,438,037	-				-0.9
5,438,037	-				-1.7
5,438,037	-				+0.6
5,438,038	+				+1.6
5,438,038	+				-0.8
5,438,038	+				-0.2
5,438,038	+				-1.0
5,438,038	+				-0.7
5,438,038	+				-2.9
5,438,038	+				-1.8
5,438,038	+				+0.5
5,438,038	+				+0.3
5,438,038	+				+1.6
5,438,038	+				+0.8
5,438,038	+				+1.4
5,438,038	+				+0.6
5,438,038	+				+0.9
5,438,038	+				-2.5
5,438,039	-				+0.7
5,438,039	-				-0.3
5,438,039	-				+1.3
5,438,039	-				-0.1
5,438,039	-				+0.3
5,438,039	-				+1.4
5,438,039	-				-2.3
5,438,039	-				+2.3
5,438,039	-				-0.5
5,438,039	-				+0.0
5,438,039	-				-0.5
5,438,039	-				+0.2
5,438,039	-				-0.3
5,438,039	-				+1.5
5,438,039	-				-1.1
5,438,039	-				-0.7
5,438,039	-				-1.3
5,438,039	-				-1.0
5,438,049	+				-2.1
5,438,079	+				-0.3
5,438,102	-				+0.3
5,438,210	+		Psyr_4575	0.14	-2.5
5,438,210	+		Psyr_4575	0.14	-1.6
5,438,210	+		Psyr_4575	0.14	-2.1
5,438,210	+		Psyr_4575	0.14	-2.1
5,438,210	+		Psyr_4575	0.14	-3.4
5,438,210	+		Psyr_4575	0.14	-1.2
5,438,210	+		Psyr_4575	0.14	-2.9
5,438,211	-		Psyr_4575	0.14	-1.3
5,438,211	-		Psyr_4575	0.14	-1.8
5,438,211	-		Psyr_4575	0.14	-0.3
5,438,211	-		Psyr_4575	0.14	-3.3
5,438,211	-		Psyr_4575	0.14	-2.4
5,438,211	-		Psyr_4575	0.14	-1.3
5,438,211	-		Psyr_4575	0.14	-4.2
5,438,211	-		Psyr_4575	0.14	-3.1
5,438,211	-		Psyr_4575	0.14	-1.5
5,438,267	+		Psyr_4575	0.21	-2.3
5,438,318	+		Psyr_4575	0.28	-2.4
5,438,318	+		Psyr_4575	0.28	-1.5
5,438,318	+		Psyr_4575	0.28	+1.1
5,438,318	+		Psyr_4575	0.28	-2.8
5,438,318	+		Psyr_4575	0.28	-1.0
5,438,319	-		Psyr_4575	0.28	-1.3
5,438,319	-		Psyr_4575	0.28	-0.7
5,438,319	-		Psyr_4575	0.28	-3.2
5,438,319	-		Psyr_4575	0.28	-3.1
5,438,319	-		Psyr_4575	0.28	-3.1
5,438,319	-		Psyr_4575	0.28	+0.3
5,438,319	-		Psyr_4575	0.28	+0.3
5,438,380	-		Psyr_4575	0.35	-2.2
5,438,428	-		Psyr_4575	0.42	-0.5
5,438,428	-		Psyr_4575	0.42	-0.6
5,438,438	+		Psyr_4575	0.43	-2.2
5,438,439	-		Psyr_4575	0.43	-2.1
5,438,463	+		Psyr_4575	0.46	-2.3
5,438,463	+		Psyr_4575	0.46	-1.3
5,438,464	-		Psyr_4575	0.46	-1.9
5,438,464	-		Psyr_4575	0.46	-1.7
5,438,551	-		Psyr_4575	0.57	-2.3
5,438,679	-		Psyr_4575	0.73	-1.7
5,438,762	+		Psyr_4575	0.84	+0.0
5,438,762	+		Psyr_4575	0.84	+0.0
5,438,762	+		Psyr_4575	0.84	-0.1
5,438,762	+		Psyr_4575	0.84	-3.4
5,438,763	-		Psyr_4575	0.84	-1.7
5,438,763	-		Psyr_4575	0.84	+0.3
5,438,763	-		Psyr_4575	0.84	-1.7
5,438,777	+		Psyr_4575	0.85	+0.3
5,438,778	-		Psyr_4575	0.86	+0.3
5,438,778	-		Psyr_4575	0.86	-1.7
5,438,778	-		Psyr_4575	0.86	-3.6
5,438,778	-		Psyr_4575	0.86	-0.1
5,438,786	+		Psyr_4575	0.87	-1.5
5,438,786	+		Psyr_4575	0.87	-0.5
5,438,786	+		Psyr_4575	0.87	-0.6
5,438,786	+		Psyr_4575	0.87	-1.0
5,438,786	+		Psyr_4575	0.87	-2.1
5,438,787	-		Psyr_4575	0.87	-1.7
5,438,787	-		Psyr_4575	0.87	-3.4
5,438,817	-				-0.1
5,438,817	-				-1.0
5,438,828	+				-2.9
5,438,828	+				-1.7
5,438,829	-				-0.1
5,438,829	-				-2.5
5,438,829	-				-2.3
5,438,907	+				-2.9
5,438,907	+				-1.1
5,438,907	+				-1.3
5,438,907	+				-2.4
5,438,907	+				-1.3
5,438,907	+				-0.6
5,438,907	+				+0.3
5,438,907	+				-1.2
5,438,907	+				-1.3
5,438,907	+				-1.5
5,438,907	+				-2.6
5,438,908	-				+0.5
5,438,908	-				+0.3
5,438,908	-				-2.2
5,438,908	-				+1.7
5,438,908	-				+0.7
5,438,908	-				-1.1
5,438,908	-				+1.5
5,438,908	-				-2.1
5,438,908	-				-1.6
5,438,908	-				+0.0
5,438,908	-				+1.0
5,438,910	-				-0.1
5,438,971	+				-0.7
5,438,972	-				-1.5
5,438,972	-				-0.9
5,439,039	+				-3.2
5,439,039	+				-1.2
5,439,039	+				+0.5
5,439,039	+				-1.3
5,439,039	+				-0.5
5,439,040	-				-2.5
5,439,040	-				-1.7
5,439,040	-				+0.1
5,439,069	+				-0.5
5,439,070	-				-0.4
5,439,113	-				+1.3
5,439,113	-				-1.5
5,439,211	+		Psyr_4576	0.18	+2.4
5,439,211	+		Psyr_4576	0.18	-0.2
5,439,211	+		Psyr_4576	0.18	+0.8
5,439,211	+		Psyr_4576	0.18	-1.5
5,439,211	+		Psyr_4576	0.18	-1.3
5,439,211	+		Psyr_4576	0.18	-0.5
5,439,211	+		Psyr_4576	0.18	-1.3
5,439,212	-		Psyr_4576	0.18	-1.7
5,439,212	-		Psyr_4576	0.18	+1.3
5,439,212	-		Psyr_4576	0.18	+0.3
5,439,212	-		Psyr_4576	0.18	+0.0
5,439,230	-		Psyr_4576	0.22	-0.1
5,439,445	-		Psyr_4576	0.73	-0.7
5,439,445	-		Psyr_4576	0.73	-1.7
5,439,575	-				+1.6
5,439,575	-				+1.3
5,439,575	-				+0.0
5,439,594	+				+2.3
5,439,661	+				-1.0
5,439,661	+				+1.8
5,439,661	+				-0.1
5,439,661	+				+0.6
5,439,662	-				+0.2
5,439,662	-				-0.1
5,439,662	-				+0.5
5,439,662	-				+1.4
5,439,662	-				+0.5
5,439,662	-				+1.0
5,439,662	-				+0.3
5,439,662	-				+2.4
5,439,669	+				+1.3
5,439,669	+				-0.1
5,439,670	-				-0.0
5,439,670	-				-2.5
5,439,670	-				-0.3
5,439,670	-				+0.4
5,439,711	-				-2.3
5,439,714	+				-0.7
5,439,714	+				-1.5
5,439,714	+				-0.2
5,439,715	-				+0.7
5,439,715	-				+1.9
5,439,715	-				+0.3
5,439,715	-				+0.3
5,439,715	-				+0.9
5,439,715	-				-0.4
5,439,715	-				+0.3
5,439,715	-				-0.0
5,439,715	-				-0.1
5,439,715	-				-0.4
5,439,716	+				+0.6
5,439,716	+				+1.1
5,439,716	+				+2.3
5,439,716	+				-0.3
5,439,716	+				+0.8
5,439,716	+				+1.5
5,439,716	+				+0.2
5,439,717	-				-0.0
5,439,717	-				+1.6
5,439,717	-				+0.2
5,439,717	-				+0.3
5,439,717	-				-0.0
5,439,717	-				+1.4
5,439,717	-				+1.9
5,439,717	-				+1.4
5,439,717	-				-1.7
5,439,717	-				-0.4
5,439,717	-				+0.3
5,439,720	+				+0.3
5,439,720	+				+0.4
5,439,721	-				-0.0
5,439,736	-				-0.7
5,439,742	+				+0.3
5,439,742	+				-0.1
5,439,742	+				+1.0
5,439,743	-				+0.3
5,439,743	-				+0.2
5,439,769	+				-0.2
5,439,769	+				+0.6