Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4514

Experiment: Citric Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C)
5,376,953	+		Psyr_4513	0.70	+1.1
5,376,953	+		Psyr_4513	0.70	+0.8
5,376,954	-		Psyr_4513	0.70	+0.3
5,376,954	-		Psyr_4513	0.70	+0.4
5,376,954	-		Psyr_4513	0.70	-0.2
5,376,954	-		Psyr_4513	0.70	+0.3
5,376,954	-		Psyr_4513	0.70	-0.8
5,376,954	-		Psyr_4513	0.70	-0.1
5,377,064	+				+1.0
5,377,064	+				+0.8
5,377,064	+				+1.0
5,377,064	+				-0.7
5,377,065	-				-0.5
5,377,065	-				-2.7
5,377,065	-				-1.3
5,377,105	+				-1.3
5,377,105	+				+0.3
5,377,125	+				-1.6
5,377,126	-				-0.2
5,377,223	+				-0.4
5,377,223	+				+2.6
5,377,223	+				-0.5
5,377,223	+				+1.0
5,377,224	-				-0.7
5,377,224	-				-0.7
5,377,224	-				+0.3
5,377,224	-				+1.5
5,377,224	-				+0.9
5,377,224	-				+0.5
5,377,224	-				-1.7
5,377,226	+				+0.5
5,377,226	+				+1.2
5,377,226	+				+0.5
5,377,227	-				-1.7
5,377,227	-				-1.7
5,377,227	-				-0.6
5,377,227	-				+2.1
5,377,285	+				-0.2
5,377,285	+				-1.7
5,377,286	-				-0.1
5,377,286	-				-0.6
5,377,286	-				+0.8
5,377,286	-				-0.5
5,377,286	-				+0.7
5,377,453	+				+1.8
5,377,490	+				+0.6
5,377,491	-				+0.8
5,377,491	-				-1.5
5,377,502	+				+0.0
5,377,502	+				-0.7
5,377,503	-				+2.1
5,377,527	+				+0.1
5,377,527	+				-1.2
5,377,531	+				+1.2
5,377,531	+				-0.2
5,377,531	+				+0.7
5,377,532	-				+0.1
5,377,532	-				-0.5
5,377,536	-				+1.0
5,377,540	-				-0.6
5,377,547	+				+0.5
5,377,548	-				+2.0
5,377,563	+				+1.3
5,377,563	+				-0.7
5,377,563	+				-1.0
5,377,564	-				+1.0
5,377,564	-				-0.2
5,377,564	-				+0.7
5,377,564	-				+1.3
5,377,564	-				+1.2
5,377,572	+				-0.7
5,377,580	+				+0.8
5,377,580	+				-0.7
5,377,625	+				+0.3
5,377,626	-				-0.1
5,377,626	-				-0.3
5,377,626	-				-0.8
5,377,626	-				+0.8
5,377,626	-				-0.2
5,377,626	-				-0.5
5,377,653	+				-0.5
5,377,653	+				-1.2
5,377,654	-				+1.3
5,377,654	-				-0.3
5,377,749	-				+0.9
5,377,749	-				-0.1
5,377,751	+				+0.8
5,377,752	-				-0.5
5,377,760	-				+0.4
5,377,782	-				+1.3
5,377,782	-				+0.6
5,377,786	-				+0.8
5,377,807	+				-0.6
5,377,922	+		Psyr_4514	0.13	-0.4
5,377,922	+		Psyr_4514	0.13	+0.8
5,377,923	-		Psyr_4514	0.13	+2.4
5,377,923	-		Psyr_4514	0.13	+0.5
5,377,935	-		Psyr_4514	0.14	+1.6
5,377,972	+		Psyr_4514	0.18	+0.1
5,377,973	-		Psyr_4514	0.18	+1.9
5,377,990	-		Psyr_4514	0.19	-0.6
5,378,013	-		Psyr_4514	0.21	-2.5
5,378,016	+		Psyr_4514	0.22	+0.6
5,378,092	+		Psyr_4514	0.29	+2.1
5,378,108	+		Psyr_4514	0.30	+0.1
5,378,118	-		Psyr_4514	0.31	+0.4
5,378,194	-		Psyr_4514	0.38	+0.7
5,378,314	-		Psyr_4514	0.49	+0.3
5,378,385	-		Psyr_4514	0.56	+1.4
5,378,416	+		Psyr_4514	0.59	-0.1
5,378,417	-		Psyr_4514	0.59	+0.3
5,378,417	-		Psyr_4514	0.59	+0.7
5,378,447	+		Psyr_4514	0.61	-1.1
5,378,457	+				-1.3
5,378,458	-		Psyr_4514	0.62	-0.0
5,378,458	-		Psyr_4514	0.62	+0.3
5,378,458	-		Psyr_4514	0.62	-0.3
5,378,458	-		Psyr_4514	0.62	+0.9
5,378,533	+		Psyr_4514	0.69	+0.1
5,378,534	-		Psyr_4514	0.69	+1.0
5,378,534	-		Psyr_4514	0.69	-2.1
5,378,536	+		Psyr_4514	0.70	+0.7
5,378,536	+		Psyr_4514	0.70	+0.3
5,378,537	-		Psyr_4514	0.70	-0.2
5,378,537	-		Psyr_4514	0.70	+0.9
5,378,537	-		Psyr_4514	0.70	-0.6
5,378,571	+		Psyr_4514	0.73	+1.6
5,378,572	-		Psyr_4514	0.73	-0.4
5,378,616	-		Psyr_4514	0.77	+3.1
5,378,657	-		Psyr_4514	0.81	+4.7
5,378,720	+		Psyr_4514	0.87	+0.9
5,378,743	+		Psyr_4514	0.89	+2.3
5,378,746	+		Psyr_4514	0.89	+2.3
5,378,747	-		Psyr_4514	0.89	-1.5
5,378,847	+				+0.3
5,378,866	-				-0.9
5,378,870	-				+1.4
5,378,922	+				-0.1
5,378,922	+				+1.1
5,378,993	+				+1.6
5,378,993	+				-0.1
5,378,994	-				-0.5
5,378,995	+				+0.3
5,379,166	+		Psyr_4515	0.14	+0.9
5,379,191	-		Psyr_4515	0.16	-1.0
5,379,217	+		Psyr_4515	0.18	-0.3
5,379,312	-		Psyr_4515	0.26	+0.4
5,379,319	+		Psyr_4515	0.27	+0.7
5,379,320	-		Psyr_4515	0.27	+0.3
5,379,320	-		Psyr_4515	0.27	-0.2
5,379,336	-		Psyr_4515	0.28	+0.4
5,379,336	-		Psyr_4515	0.28	-0.1
5,379,408	-		Psyr_4515	0.34	+1.0
5,379,537	+		Psyr_4515	0.45	+1.0
5,379,537	+		Psyr_4515	0.45	-1.0
5,379,537	+		Psyr_4515	0.45	-1.6
5,379,538	-		Psyr_4515	0.45	-1.1
5,379,538	-		Psyr_4515	0.45	-1.4
5,379,538	-		Psyr_4515	0.45	+0.0
5,379,538	-		Psyr_4515	0.45	+0.9
5,379,538	-		Psyr_4515	0.45	+0.4
5,379,538	-		Psyr_4515	0.45	+0.7
5,379,540	+		Psyr_4515	0.45	-1.3
5,379,541	-		Psyr_4515	0.45	+1.3
5,379,556	+		Psyr_4515	0.46	-0.5
5,379,556	+		Psyr_4515	0.46	+0.9
5,379,576	-		Psyr_4515	0.48	-0.0
5,379,576	-		Psyr_4515	0.48	+0.3
5,379,578	+		Psyr_4515	0.48	-0.1
5,379,579	-		Psyr_4515	0.48	+1.9
5,379,632	+		Psyr_4515	0.53	-1.1
5,379,644	+		Psyr_4515	0.54	+1.1
5,379,733	+		Psyr_4515	0.61	-0.6
5,379,734	-		Psyr_4515	0.61	+2.6
5,379,734	-		Psyr_4515	0.61	-0.2
5,379,737	+		Psyr_4515	0.61	-0.3
5,379,737	+		Psyr_4515	0.61	+0.4
5,379,738	-		Psyr_4515	0.61	+0.0
5,379,738	-		Psyr_4515	0.61	+1.9
5,379,758	+		Psyr_4515	0.63	-0.5
5,379,758	+		Psyr_4515	0.63	+0.3
5,379,758	+		Psyr_4515	0.63	-0.1
5,379,758	+		Psyr_4515	0.63	-0.3
5,379,758	+		Psyr_4515	0.63	-0.7
5,379,758	+		Psyr_4515	0.63	+0.6
5,379,759	-		Psyr_4515	0.63	-0.3
5,379,759	-		Psyr_4515	0.63	-1.0
5,379,759	-				+0.3
5,379,766	+		Psyr_4515	0.64	+0.3