Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4055

Experiment: Citric Acid (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Citric Acid (C)
4,836,655	-				+1.8
4,836,655	-				-1.1
4,836,655	-				-1.9
4,836,675	+				+1.1
4,836,675	+				-1.4
4,836,676	-				-0.4
4,836,728	+				+1.2
4,836,740	-				-0.2
4,836,740	-				-0.2
4,836,740	-				+1.1
4,836,777	+				+0.9
4,836,777	+				-0.0
4,836,777	+				-1.2
4,836,777	+				-3.6
4,836,778	-				-0.2
4,836,778	-				+1.7
4,836,781	+				+0.1
4,836,781	+				-0.9
4,836,781	+				-2.7
4,836,781	+				+0.6
4,836,781	+				+2.2
4,836,781	+				+0.7
4,836,781	+				+1.7
4,836,782	-				-0.7
4,836,782	-				+2.5
4,836,782	-				+0.4
4,836,782	-				-1.0
4,836,782	-				-0.1
4,836,782	-				+0.5
4,836,782	-				-0.2
4,836,782	-				-0.9
4,836,782	-				-0.3
4,836,782	-				+0.7
4,836,784	+				+1.4
4,836,784	+				+0.6
4,836,784	+				+0.1
4,836,784	+				+0.1
4,836,784	+				-0.2
4,836,784	+				+1.2
4,836,784	+				+0.1
4,836,784	+				+0.3
4,836,784	+				-1.4
4,836,784	+				+0.5
4,836,784	+				-0.7
4,836,785	-				-0.2
4,836,785	-				-0.9
4,836,785	-				-1.9
4,836,785	-				+1.7
4,836,785	-				-0.1
4,836,785	-				+0.2
4,836,785	-				-0.9
4,836,785	-				-0.1
4,836,785	-				+1.2
4,836,912	+		Psyr_4054	0.21	-0.2
4,836,912	+		Psyr_4054	0.21	+0.4
4,836,912	+		Psyr_4054	0.21	+0.1
4,836,913	-		Psyr_4054	0.21	-1.1
4,836,913	-		Psyr_4054	0.21	+0.8
4,837,099	+		Psyr_4054	0.46	+1.1
4,837,099	+		Psyr_4054	0.46	-0.1
4,837,100	-		Psyr_4054	0.46	-0.8
4,837,100	-		Psyr_4054	0.46	-0.3
4,837,100	-		Psyr_4054	0.46	+0.9
4,837,100	-		Psyr_4054	0.46	+1.1
4,837,165	-		Psyr_4054	0.54	+0.5
4,837,390	+		Psyr_4054	0.84	+0.1
4,837,390	+		Psyr_4054	0.84	+0.4
4,837,390	+		Psyr_4054	0.84	+0.9
4,837,483	-				-0.2
4,837,528	+				+0.4
4,837,528	+				-0.1
4,837,574	+				+1.0
4,837,574	+				-2.5
4,837,574	+				+0.7
4,837,574	+				-1.2
4,837,575	-				+1.3
4,837,575	-				-2.1
4,837,575	-				+1.1
4,837,575	-				+0.1
4,837,575	-				+1.5
4,837,575	-				+0.8
4,837,576	+				-1.9
4,837,576	+				+0.7
4,837,576	+				+1.5
4,837,576	+				-0.9
4,837,576	+				-0.5
4,837,576	+				-0.4
4,837,576	+				-1.1
4,837,576	+				-0.6
4,837,576	+				+0.9
4,837,576	+				-1.6
4,837,576	+				+0.1
4,837,576	+				-0.6
4,837,576	+				+0.8
4,837,576	+				-1.6
4,837,576	+				+0.1
4,837,576	+				-0.9
4,837,576	+				-0.3
4,837,576	+				-0.1
4,837,576	+				-0.2
4,837,576	+				+0.2
4,837,576	+				-0.7
4,837,576	+				-0.9
4,837,576	+				-1.9
4,837,576	+				-0.5
4,837,576	+				+0.5
4,837,576	+				-0.4
4,837,577	-				+0.4
4,837,577	-				-0.3
4,837,577	-				+0.4
4,837,577	-				+0.1
4,837,577	-				-0.2
4,837,577	-				-0.9
4,837,577	-				-2.2
4,837,577	-				+0.1
4,837,577	-				-3.1
4,837,577	-				-2.2
4,837,577	-				-0.6
4,837,577	-				+1.1
4,837,577	-				+1.6
4,837,577	-				+0.3
4,837,577	-				-1.8
4,837,577	-				-0.5
4,837,577	-				+0.1
4,837,577	-				-1.2
4,837,577	-				+0.1
4,837,577	-				+2.0
4,837,577	-				-0.8
4,837,577	-				-0.2
4,837,577	-				+1.7
4,837,577	-				+0.1
4,837,577	-				+0.9
4,837,577	-				-0.1
4,837,577	-				-1.4
4,837,580	+				+1.1
4,837,580	+				-0.3
4,837,580	+				+0.4
4,837,580	+				-0.1
4,837,580	+				-1.1
4,837,580	+				-0.9
4,837,580	+				-0.7
4,837,581	-				+1.1
4,837,581	-				+1.9
4,837,581	-				-1.5
4,837,581	-				-0.1
4,837,581	-				-2.7
4,837,581	-				+1.7
4,837,581	-				-0.2
4,837,696	+				+2.0
4,837,696	+				-0.3
4,837,696	+				-0.0
4,837,712	-				+0.1
4,837,750	+		Psyr_4055	0.12	-0.2
4,837,750	+		Psyr_4055	0.12	+0.3
4,838,191	+		Psyr_4055	0.64	-1.3
4,838,191	+		Psyr_4055	0.64	+0.1
4,838,191	+		Psyr_4055	0.64	+0.7
4,838,192	-		Psyr_4055	0.64	-0.1
4,838,505	-				+2.3
4,838,523	+				-0.3
4,838,523	+				+0.7
4,838,524	-				-0.4
4,838,524	-				-1.5
4,838,537	+				+0.4
4,838,537	+				+1.7
4,838,555	+				-0.8
4,838,555	+				+0.1
4,838,555	+				+0.4
4,838,556	-				+1.1
4,838,556	-				-0.8
4,838,556	-				+0.7
4,838,556	-				-0.2
4,838,556	-				+0.7
4,838,556	-				+0.6
4,838,557	+				+0.1
4,838,558	-				+0.1
4,838,558	-				-0.2
4,838,558	-				+0.1
4,838,558	-				-0.3
4,838,558	-				-2.1
4,838,681	+				-1.0
4,838,681	+				-0.1
4,838,682	-				-0.3
4,838,700	+		Psyr_4056	0.10	-0.9
4,838,751	+		Psyr_4056	0.15	+1.1
4,838,751	+		Psyr_4056	0.15	-0.0
4,838,752	-		Psyr_4056	0.15	-0.2
4,838,752	-		Psyr_4056	0.15	+0.6
4,838,752	-		Psyr_4056	0.15	+0.7
4,838,752	-		Psyr_4056	0.15	+1.4
4,838,752	-		Psyr_4056	0.15	+0.6
4,838,752	-		Psyr_4056	0.15	+2.3
4,838,810	+		Psyr_4056	0.21	+0.5
4,838,870	+		Psyr_4056	0.27	-0.1
4,838,870	+		Psyr_4056	0.27	+1.0
4,838,870	+		Psyr_4056	0.27	+0.8
4,838,870	+		Psyr_4056	0.27	+3.3
4,838,870	+		Psyr_4056	0.27	-0.9
4,838,870	+		Psyr_4056	0.27	-1.5
4,838,870	+				+0.1
4,838,870	+		Psyr_4056	0.27	-1.5
4,838,871	-		Psyr_4056	0.27	-0.2
4,838,871	-		Psyr_4056	0.27	+2.9
4,838,871	-		Psyr_4056	0.27	+1.1
4,838,871	-		Psyr_4056	0.27	-0.2
4,838,871	-		Psyr_4056	0.27	-0.4
4,838,871	-		Psyr_4056	0.27	-1.1
4,838,871	-		Psyr_4056	0.27	-0.8
4,838,871	-		Psyr_4056	0.27	+1.8
4,838,918	+		Psyr_4056	0.32	+0.9
4,838,918	+		Psyr_4056	0.32	+1.4
4,838,918	+		Psyr_4056	0.32	-1.5
4,838,918	+		Psyr_4056	0.32	-2.1
4,838,918	+		Psyr_4056	0.32	+0.5
4,838,918	+		Psyr_4056	0.32	+0.1
4,838,919	-		Psyr_4056	0.32	+0.7
4,838,919	-		Psyr_4056	0.32	+1.1
4,838,919	-		Psyr_4056	0.32	+1.1
4,838,919	-		Psyr_4056	0.32	-0.9
4,839,020	-		Psyr_4056	0.42	-0.5
4,839,020	-		Psyr_4056	0.42	+1.1
4,839,069	+		Psyr_4056	0.47	-0.2
4,839,069	+		Psyr_4056	0.47	-0.9
4,839,069	+		Psyr_4056	0.47	+1.9
4,839,069	+		Psyr_4056	0.47	-0.1
4,839,069	+		Psyr_4056	0.47	+2.1
4,839,069	+		Psyr_4056	0.47	+0.1
4,839,069	+		Psyr_4056	0.47	-0.1
4,839,069	+		Psyr_4056	0.47	+0.7
4,839,069	+		Psyr_4056	0.47	+0.1
4,839,069	+		Psyr_4056	0.47	+0.5
4,839,069	+		Psyr_4056	0.47	+1.7
4,839,070	-		Psyr_4056	0.47	+0.1
4,839,070	-		Psyr_4056	0.47	+0.9
4,839,070	-		Psyr_4056	0.47	-0.2
4,839,070	-		Psyr_4056	0.47	+0.4
4,839,070	-		Psyr_4056	0.47	+1.1
4,839,070	-		Psyr_4056	0.47	-0.1
4,839,070	-		Psyr_4056	0.47	-0.6
4,839,164	+		Psyr_4056	0.57	+1.1
4,839,164	+		Psyr_4056	0.57	+1.2
4,839,164	+		Psyr_4056	0.57	+0.4
4,839,165	-		Psyr_4056	0.57	+0.7
4,839,165	-		Psyr_4056	0.57	+0.2
4,839,165	-		Psyr_4056	0.57	+2.3
4,839,165	-		Psyr_4056	0.57	-0.1
4,839,165	-		Psyr_4056	0.57	-1.5
4,839,179	+		Psyr_4056	0.58	+0.4
4,839,245	+		Psyr_4056	0.65	+1.1
4,839,245	+		Psyr_4056	0.65	-0.1
4,839,245	+		Psyr_4056	0.65	-0.3
4,839,246	-		Psyr_4056	0.65	-0.9