Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1363

Experiment: Citric Acid (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_1361 and Psyr_1362 are separated by 14 nucleotidesPsyr_1362 and Psyr_1363 are separated by 138 nucleotidesPsyr_1363 and Psyr_1364 are separated by 112 nucleotidesPsyr_1364 and Psyr_1365 are separated by 13 nucleotides Psyr_1361: Psyr_1361 - CTP synthase, at 1,544,354 to 1,545,985 _1361 Psyr_1362: Psyr_1362 - 2-dehydro-3-deoxyphosphooctonate aldolase, at 1,546,000 to 1,546,845 _1362 Psyr_1363: Psyr_1363 - enolase, at 1,546,984 to 1,548,270 _1363 Psyr_1364: Psyr_1364 - cell division protein FtsB, at 1,548,383 to 1,548,739 _1364 Psyr_1365: Psyr_1365 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 1,548,753 to 1,549,463 _1365 Position (kb) 1546 1547 1548 1549Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1547.193 kb on + strand, within Psyr_1363at 1547.413 kb on + strand, within Psyr_1363at 1548.193 kb on + strandat 1548.241 kb on + strandat 1548.241 kb on + strandat 1548.241 kb on + strandat 1548.275 kb on + strandat 1548.275 kb on + strandat 1548.275 kb on + strandat 1548.275 kb on + strandat 1548.275 kb on + strandat 1548.275 kb on + strandat 1548.275 kb on + strandat 1548.275 kb on + strandat 1548.276 kb on - strandat 1548.276 kb on - strandat 1548.276 kb on - strandat 1548.276 kb on - strandat 1548.382 kb on + strandat 1548.382 kb on + strandat 1548.382 kb on + strandat 1548.382 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C)
remove
1,547,193 + Psyr_1363 0.16 -1.0
1,547,413 + Psyr_1363 0.33 -1.0
1,548,193 + -2.6
1,548,241 + -2.0
1,548,241 + -2.0
1,548,241 + -3.6
1,548,275 + -1.3
1,548,275 + -1.6
1,548,275 + -3.4
1,548,275 + -1.9
1,548,275 + -0.0
1,548,275 + -1.4
1,548,275 + +0.8
1,548,275 + -2.0
1,548,276 - +1.0
1,548,276 - +2.0
1,548,276 - -2.0
1,548,276 - -1.6
1,548,382 + -1.6
1,548,382 + -0.2
1,548,382 + +0.5
1,548,382 + -0.6

Or see this region's nucleotide sequence