Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0771

Experiment: Citric Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0769 and Psyr_0770 are separated by 14 nucleotidesPsyr_0770 and Psyr_0771 are separated by 264 nucleotidesPsyr_0771 and Psyr_0772 are separated by 12 nucleotidesPsyr_0772 and Psyr_0773 overlap by 4 nucleotides Psyr_0769: Psyr_0769 - conserved hypothetical membrane-anchored protein, at 874,418 to 874,861 _0769 Psyr_0770: Psyr_0770 - conserved hypothetical protein, at 874,876 to 875,334 _0770 Psyr_0771: Psyr_0771 - acetylornithine deacetylase, at 875,599 to 876,741 _0771 Psyr_0772: Psyr_0772 - Protein of unknown function DUF1355, at 876,754 to 877,509 _0772 Psyr_0773: Psyr_0773 - Aryldialkylphosphatase, at 877,506 to 878,621 _0773 Position (kb) 875 876 877Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 874.658 kb on + strand, within Psyr_0769at 874.658 kb on + strand, within Psyr_0769at 874.658 kb on + strand, within Psyr_0769at 874.659 kb on - strand, within Psyr_0769at 874.659 kb on - strand, within Psyr_0769at 874.772 kb on - strand, within Psyr_0769at 874.772 kb on - strand, within Psyr_0769at 874.830 kb on + strandat 874.830 kb on + strandat 874.831 kb on - strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.861 kb on + strandat 874.862 kb on - strandat 874.862 kb on - strandat 874.862 kb on - strandat 874.884 kb on - strandat 874.884 kb on - strandat 874.887 kb on + strandat 874.887 kb on + strandat 874.887 kb on + strandat 874.887 kb on + strandat 874.888 kb on - strandat 874.888 kb on - strandat 874.888 kb on - strandat 874.923 kb on + strand, within Psyr_0770at 874.923 kb on + strand, within Psyr_0770at 874.923 kb on + strand, within Psyr_0770at 874.923 kb on + strand, within Psyr_0770at 874.923 kb on + strand, within Psyr_0770at 874.924 kb on - strand, within Psyr_0770at 874.924 kb on - strand, within Psyr_0770at 874.924 kb on - strand, within Psyr_0770at 874.924 kb on - strand, within Psyr_0770at 874.973 kb on + strand, within Psyr_0770at 874.973 kb on + strand, within Psyr_0770at 874.973 kb on + strand, within Psyr_0770at 874.974 kb on - strand, within Psyr_0770at 874.984 kb on + strand, within Psyr_0770at 875.075 kb on - strand, within Psyr_0770at 875.183 kb on + strand, within Psyr_0770at 875.183 kb on + strand, within Psyr_0770at 875.184 kb on - strand, within Psyr_0770at 875.184 kb on - strand, within Psyr_0770at 875.269 kb on + strand, within Psyr_0770at 875.269 kb on + strand, within Psyr_0770at 875.275 kb on + strand, within Psyr_0770at 875.275 kb on + strand, within Psyr_0770at 875.275 kb on + strand, within Psyr_0770at 875.276 kb on - strand, within Psyr_0770at 875.276 kb on - strand, within Psyr_0770at 875.276 kb on - strand, within Psyr_0770at 875.334 kb on + strandat 875.335 kb on - strandat 875.433 kb on - strandat 875.433 kb on - strandat 875.441 kb on + strandat 875.441 kb on + strandat 875.442 kb on - strandat 875.442 kb on - strandat 875.442 kb on - strandat 875.442 kb on - strandat 875.442 kb on - strandat 875.442 kb on - strandat 875.444 kb on + strandat 875.445 kb on - strandat 875.478 kb on + strandat 875.478 kb on + strandat 875.478 kb on + strandat 875.479 kb on - strandat 875.479 kb on - strandat 875.495 kb on + strandat 875.572 kb on - strandat 875.590 kb on + strandat 875.590 kb on + strandat 875.590 kb on + strandat 875.590 kb on + strandat 875.591 kb on - strandat 875.591 kb on - strandat 875.651 kb on + strandat 875.652 kb on - strandat 875.652 kb on - strandat 875.652 kb on - strandat 875.690 kb on + strandat 875.690 kb on + strandat 875.690 kb on + strandat 875.690 kb on + strandat 875.691 kb on - strandat 875.691 kb on - strandat 875.691 kb on - strandat 875.691 kb on - strandat 875.691 kb on - strandat 875.737 kb on - strand, within Psyr_0771at 875.789 kb on + strand, within Psyr_0771at 875.790 kb on - strand, within Psyr_0771at 875.883 kb on + strand, within Psyr_0771at 875.884 kb on - strand, within Psyr_0771at 875.884 kb on - strand, within Psyr_0771at 876.006 kb on - strand, within Psyr_0771at 876.042 kb on + strand, within Psyr_0771at 876.091 kb on + strand, within Psyr_0771at 876.091 kb on + strand, within Psyr_0771at 876.092 kb on - strand, within Psyr_0771at 876.092 kb on - strand, within Psyr_0771at 876.092 kb on - strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.134 kb on + strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.135 kb on - strand, within Psyr_0771at 876.138 kb on + strand, within Psyr_0771at 876.138 kb on + strand, within Psyr_0771at 876.138 kb on + strand, within Psyr_0771at 876.139 kb on - strand, within Psyr_0771at 876.139 kb on - strand, within Psyr_0771at 876.234 kb on - strand, within Psyr_0771at 876.347 kb on - strand, within Psyr_0771at 876.726 kb on + strandat 876.727 kb on - strandat 876.727 kb on - strandat 876.727 kb on - strandat 876.968 kb on + strand, within Psyr_0772at 876.980 kb on + strand, within Psyr_0772at 877.070 kb on + strand, within Psyr_0772at 877.085 kb on - strand, within Psyr_0772at 877.194 kb on - strand, within Psyr_0772at 877.194 kb on - strand, within Psyr_0772at 877.194 kb on - strand, within Psyr_0772at 877.267 kb on - strand, within Psyr_0772at 877.495 kb on + strandat 877.651 kb on + strand, within Psyr_0773at 877.651 kb on + strand, within Psyr_0773

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C)
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874,658 + Psyr_0769 0.54 +0.6
874,658 + Psyr_0769 0.54 +0.8
874,658 + Psyr_0769 0.54 -2.1
874,659 - Psyr_0769 0.54 -0.2
874,659 - Psyr_0769 0.54 +1.7
874,772 - Psyr_0769 0.80 +1.0
874,772 - Psyr_0769 0.80 +1.5
874,830 + +0.6
874,830 + +0.1
874,831 - -0.9
874,861 + -1.2
874,861 + +0.9
874,861 + +0.1
874,861 + -0.9
874,861 + -0.3
874,862 - -2.9
874,862 - -2.3
874,862 - +1.7
874,884 - +1.4
874,884 - -1.3
874,887 + +0.1
874,887 + -0.7
874,887 + -0.3
874,887 + -0.3
874,888 - -0.9
874,888 - -2.2
874,888 - -1.3
874,923 + Psyr_0770 0.10 +0.1
874,923 + Psyr_0770 0.10 -1.5
874,923 + Psyr_0770 0.10 +1.0
874,923 + Psyr_0770 0.10 -0.7
874,923 + Psyr_0770 0.10 -0.6
874,924 - Psyr_0770 0.10 +0.4
874,924 - Psyr_0770 0.10 +1.0
874,924 - Psyr_0770 0.10 +0.6
874,924 - Psyr_0770 0.10 +0.0
874,973 + Psyr_0770 0.21 -0.5
874,973 + Psyr_0770 0.21 +0.2
874,973 + Psyr_0770 0.21 +1.1
874,974 - Psyr_0770 0.21 +0.6
874,984 + Psyr_0770 0.24 +0.3
875,075 - Psyr_0770 0.43 -1.4
875,183 + Psyr_0770 0.67 +3.5
875,183 + Psyr_0770 0.67 +1.4
875,184 - Psyr_0770 0.67 +0.1
875,184 - Psyr_0770 0.67 -0.3
875,269 + Psyr_0770 0.86 -2.3
875,269 + Psyr_0770 0.86 +1.1
875,275 + Psyr_0770 0.87 +0.1
875,275 + Psyr_0770 0.87 -0.8
875,275 + Psyr_0770 0.87 -0.9
875,276 - Psyr_0770 0.87 +0.1
875,276 - Psyr_0770 0.87 -0.2
875,276 - Psyr_0770 0.87 +0.1
875,334 + -0.5
875,335 - +1.1
875,433 - +0.4
875,433 - -1.0
875,441 + +1.0
875,441 + +0.3
875,442 - -0.9
875,442 - +1.7
875,442 - +2.1
875,442 - +0.9
875,442 - +1.3
875,442 - -1.6
875,444 + -0.7
875,445 - +0.8
875,478 + +0.1
875,478 + -1.6
875,478 + -1.0
875,479 - +0.4
875,479 - +2.1
875,495 + -0.2
875,572 - -1.0
875,590 + +1.1
875,590 + +0.7
875,590 + +2.0
875,590 + -0.2
875,591 - -0.9
875,591 - -1.9
875,651 + -0.6
875,652 - -0.4
875,652 - +0.2
875,652 - -0.9
875,690 + -0.9
875,690 + +0.6
875,690 + -2.2
875,690 + +0.9
875,691 - +1.6
875,691 - +0.8
875,691 - -1.4
875,691 - +0.9
875,691 - -1.1
875,737 - Psyr_0771 0.12 +0.6
875,789 + Psyr_0771 0.17 -0.3
875,790 - Psyr_0771 0.17 +1.0
875,883 + Psyr_0771 0.25 +0.6
875,884 - Psyr_0771 0.25 -0.1
875,884 - Psyr_0771 0.25 -0.5
876,006 - Psyr_0771 0.36 +0.1
876,042 + Psyr_0771 0.39 +0.4
876,091 + Psyr_0771 0.43 -0.2
876,091 + Psyr_0771 0.43 -0.3
876,092 - Psyr_0771 0.43 +1.1
876,092 - Psyr_0771 0.43 +0.7
876,092 - Psyr_0771 0.43 -0.6
876,134 + Psyr_0771 0.47 -2.4
876,134 + Psyr_0771 0.47 +1.7
876,134 + Psyr_0771 0.47 -0.9
876,134 + Psyr_0771 0.47 -1.4
876,134 + Psyr_0771 0.47 +1.5
876,134 + Psyr_0771 0.47 +0.6
876,134 + Psyr_0771 0.47 -0.2
876,134 + Psyr_0771 0.47 -2.9
876,134 + Psyr_0771 0.47 -0.1
876,134 + Psyr_0771 0.47 +0.7
876,135 - Psyr_0771 0.47 -0.5
876,135 - Psyr_0771 0.47 -1.7
876,135 - Psyr_0771 0.47 -1.0
876,135 - Psyr_0771 0.47 -1.3
876,135 - Psyr_0771 0.47 -0.9
876,135 - Psyr_0771 0.47 -1.4
876,135 - Psyr_0771 0.47 +1.1
876,138 + Psyr_0771 0.47 -1.4
876,138 + Psyr_0771 0.47 -0.5
876,138 + Psyr_0771 0.47 +2.5
876,139 - Psyr_0771 0.47 +0.1
876,139 - Psyr_0771 0.47 -0.7
876,234 - Psyr_0771 0.56 -2.9
876,347 - Psyr_0771 0.65 -0.5
876,726 + -0.0
876,727 - +0.8
876,727 - +0.7
876,727 - +1.5
876,968 + Psyr_0772 0.28 -0.5
876,980 + Psyr_0772 0.30 +0.2
877,070 + Psyr_0772 0.42 +0.1
877,085 - Psyr_0772 0.44 -0.1
877,194 - Psyr_0772 0.58 -1.1
877,194 - Psyr_0772 0.58 -2.4
877,194 - Psyr_0772 0.58 +2.0
877,267 - Psyr_0772 0.68 +0.1
877,495 + -0.1
877,651 + Psyr_0773 0.13 -0.1
877,651 + Psyr_0773 0.13 -0.2

Or see this region's nucleotide sequence