Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0647

Experiment: Citric Acid (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0645 and Psyr_0646 are separated by 185 nucleotidesPsyr_0646 and Psyr_0647 are separated by 32 nucleotidesPsyr_0647 and Psyr_0648 are separated by 7 nucleotides Psyr_0645: Psyr_0645 - 3-ketoacyl-CoA thiolase, at 732,804 to 734,081 _0645 Psyr_0646: Psyr_0646 - conserved hypothetical protein, at 734,267 to 734,545 _0646 Psyr_0647: Psyr_0647 - Protein of unknown function DUF726, at 734,578 to 735,975 _0647 Psyr_0648: Psyr_0648 - transporter, putative, at 735,983 to 737,011 _0648 Position (kb) 734 735 736Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 733.791 kb on + strand, within Psyr_0645at 733.829 kb on + strand, within Psyr_0645at 734.104 kb on + strandat 734.104 kb on + strandat 734.104 kb on + strandat 734.105 kb on - strandat 734.120 kb on + strandat 734.121 kb on - strandat 734.121 kb on - strandat 734.121 kb on - strandat 734.148 kb on + strandat 734.160 kb on - strandat 734.240 kb on + strandat 734.241 kb on - strandat 734.261 kb on + strandat 734.261 kb on + strandat 734.262 kb on - strandat 734.262 kb on - strandat 734.278 kb on + strandat 734.292 kb on + strandat 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.365 kb on + strand, within Psyr_0646at 734.365 kb on + strand, within Psyr_0646at 734.366 kb on - strand, within Psyr_0646at 734.366 kb on - strand, within Psyr_0646at 734.436 kb on + strand, within Psyr_0646at 734.436 kb on + strand, within Psyr_0646at 734.437 kb on - strand, within Psyr_0646at 734.437 kb on - strand, within Psyr_0646at 734.444 kb on + strand, within Psyr_0646at 734.444 kb on + strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.511 kb on + strand, within Psyr_0646at 734.698 kb on - strandat 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.051 kb on - strand, within Psyr_0647at 735.136 kb on + strand, within Psyr_0647at 735.137 kb on - strand, within Psyr_0647at 735.193 kb on - strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.552 kb on + strand, within Psyr_0647at 735.553 kb on - strand, within Psyr_0647at 735.583 kb on + strand, within Psyr_0647at 735.729 kb on + strand, within Psyr_0647at 735.729 kb on + strand, within Psyr_0647at 735.729 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.733 kb on + strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.734 kb on - strand, within Psyr_0647at 735.937 kb on + strandat 735.938 kb on - strandat 735.973 kb on + strandat 735.973 kb on + strandat 735.973 kb on + strandat 735.973 kb on + strandat 735.973 kb on + strandat 735.974 kb on - strandat 735.974 kb on - strandat 735.974 kb on - strandat 735.974 kb on - strandat 736.044 kb on + strandat 736.044 kb on + strandat 736.044 kb on + strandat 736.044 kb on + strandat 736.044 kb on + strandat 736.089 kb on + strand, within Psyr_0648at 736.089 kb on + strand, within Psyr_0648at 736.089 kb on + strand, within Psyr_0648at 736.089 kb on + strand, within Psyr_0648at 736.090 kb on - strand, within Psyr_0648at 736.090 kb on - strand, within Psyr_0648at 736.362 kb on + strand, within Psyr_0648at 736.362 kb on + strand, within Psyr_0648at 736.363 kb on - strand, within Psyr_0648at 736.363 kb on - strand, within Psyr_0648at 736.404 kb on + strand, within Psyr_0648at 736.404 kb on + strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.405 kb on - strand, within Psyr_0648at 736.448 kb on + strand, within Psyr_0648at 736.448 kb on + strand, within Psyr_0648at 736.449 kb on - strand, within Psyr_0648at 736.859 kb on + strand, within Psyr_0648at 736.859 kb on + strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.860 kb on - strand, within Psyr_0648at 736.884 kb on + strand, within Psyr_0648at 736.884 kb on + strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.885 kb on - strand, within Psyr_0648at 736.932 kb on + strandat 736.932 kb on + strandat 736.932 kb on + strandat 736.933 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid (C)
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733,791 + Psyr_0645 0.77 -2.8
733,829 + Psyr_0645 0.80 +0.4
734,104 + +1.5
734,104 + +0.5
734,104 + -0.1
734,105 - -0.4
734,120 + -3.4
734,121 - -2.6
734,121 - +0.2
734,121 - -0.7
734,148 + -0.4
734,160 - +2.2
734,240 + +1.0
734,241 - -0.7
734,261 + -0.1
734,261 + -0.7
734,262 - -1.8
734,262 - -2.4
734,278 + -2.6
734,292 + +0.3
734,321 + Psyr_0646 0.19 -1.8
734,321 + Psyr_0646 0.19 -1.4
734,321 + Psyr_0646 0.19 -0.6
734,321 + Psyr_0646 0.19 +0.2
734,321 + Psyr_0646 0.19 -0.8
734,321 + Psyr_0646 0.19 -0.1
734,322 - Psyr_0646 0.20 +0.6
734,322 - Psyr_0646 0.20 +0.5
734,322 - Psyr_0646 0.20 -1.4
734,322 - Psyr_0646 0.20 +0.3
734,322 - Psyr_0646 0.20 +1.3
734,322 - Psyr_0646 0.20 -0.4
734,322 - Psyr_0646 0.20 +1.5
734,363 + Psyr_0646 0.34 +1.2
734,363 + Psyr_0646 0.34 -0.6
734,363 + Psyr_0646 0.34 +0.4
734,363 + Psyr_0646 0.34 +0.6
734,363 + Psyr_0646 0.34 -1.9
734,363 + Psyr_0646 0.34 +0.3
734,363 + Psyr_0646 0.34 +3.0
734,363 + Psyr_0646 0.34 +2.3
734,363 + Psyr_0646 0.34 +1.1
734,363 + Psyr_0646 0.34 +1.2
734,364 - Psyr_0646 0.35 +1.4
734,364 - Psyr_0646 0.35 +0.6
734,364 - Psyr_0646 0.35 -0.4
734,364 - Psyr_0646 0.35 +2.5
734,364 - Psyr_0646 0.35 +2.8
734,364 - Psyr_0646 0.35 +0.2
734,364 - Psyr_0646 0.35 +1.2
734,364 - Psyr_0646 0.35 -0.0
734,365 + Psyr_0646 0.35 +0.3
734,365 + Psyr_0646 0.35 +0.2
734,366 - Psyr_0646 0.35 -2.4
734,366 - Psyr_0646 0.35 +0.9
734,436 + Psyr_0646 0.61 -0.1
734,436 + Psyr_0646 0.61 +0.2
734,437 - Psyr_0646 0.61 +0.2
734,437 - Psyr_0646 0.61 -0.5
734,444 + Psyr_0646 0.63 +0.2
734,444 + Psyr_0646 0.63 +0.9
734,445 - Psyr_0646 0.64 +0.0
734,445 - Psyr_0646 0.64 +1.0
734,445 - Psyr_0646 0.64 -1.1
734,445 - Psyr_0646 0.64 +0.8
734,445 - Psyr_0646 0.64 +0.8
734,445 - Psyr_0646 0.64 +2.2
734,511 + Psyr_0646 0.87 +0.1
734,698 - +0.7
735,050 + Psyr_0647 0.34 -0.8
735,050 + Psyr_0647 0.34 -1.0
735,050 + Psyr_0647 0.34 +2.2
735,050 + Psyr_0647 0.34 +1.2
735,050 + Psyr_0647 0.34 -0.3
735,050 + Psyr_0647 0.34 +2.4
735,051 - Psyr_0647 0.34 -0.1
735,136 + Psyr_0647 0.40 +0.1
735,137 - Psyr_0647 0.40 -0.9
735,193 - Psyr_0647 0.44 +0.2
735,475 + Psyr_0647 0.64 -0.5
735,475 + Psyr_0647 0.64 -1.3
735,475 + Psyr_0647 0.64 -0.4
735,475 + Psyr_0647 0.64 -0.4
735,476 - Psyr_0647 0.64 +0.5
735,476 - Psyr_0647 0.64 +0.0
735,476 - Psyr_0647 0.64 +0.8
735,476 - Psyr_0647 0.64 -0.2
735,552 + Psyr_0647 0.70 -1.0
735,553 - Psyr_0647 0.70 +0.6
735,583 + Psyr_0647 0.72 -0.8
735,729 + Psyr_0647 0.82 +0.2
735,729 + Psyr_0647 0.82 +0.8
735,729 + Psyr_0647 0.82 +1.2
735,733 + Psyr_0647 0.83 +0.6
735,733 + Psyr_0647 0.83 +0.4
735,733 + Psyr_0647 0.83 +0.2
735,733 + Psyr_0647 0.83 +0.0
735,733 + Psyr_0647 0.83 -0.7
735,733 + Psyr_0647 0.83 +1.8
735,733 + Psyr_0647 0.83 -1.5
735,733 + Psyr_0647 0.83 +0.2
735,733 + Psyr_0647 0.83 -1.7
735,733 + Psyr_0647 0.83 -0.5
735,733 + Psyr_0647 0.83 -1.1
735,733 + Psyr_0647 0.83 +2.0
735,733 + Psyr_0647 0.83 +0.8
735,734 - Psyr_0647 0.83 +2.3
735,734 - Psyr_0647 0.83 +0.9
735,734 - Psyr_0647 0.83 -0.7
735,734 - Psyr_0647 0.83 +1.8
735,734 - Psyr_0647 0.83 +0.1
735,734 - Psyr_0647 0.83 +0.0
735,734 - Psyr_0647 0.83 -0.2
735,734 - Psyr_0647 0.83 +1.4
735,734 - Psyr_0647 0.83 +1.4
735,734 - Psyr_0647 0.83 +0.3
735,734 - Psyr_0647 0.83 +0.2
735,937 + +0.6
735,938 - +2.1
735,973 + -0.0
735,973 + -1.4
735,973 + -0.8
735,973 + -1.4
735,973 + -1.4
735,974 - +0.5
735,974 - -1.1
735,974 - +1.0
735,974 - +0.4
736,044 + -0.1
736,044 + -0.4
736,044 + +0.3
736,044 + +0.7
736,044 + +1.4
736,089 + Psyr_0648 0.10 +0.2
736,089 + Psyr_0648 0.10 +0.8
736,089 + Psyr_0648 0.10 -2.1
736,089 + Psyr_0648 0.10 -1.7
736,090 - Psyr_0648 0.10 -1.4
736,090 - Psyr_0648 0.10 +0.8
736,362 + Psyr_0648 0.37 +1.2
736,362 + Psyr_0648 0.37 +0.2
736,363 - Psyr_0648 0.37 -0.3
736,363 - Psyr_0648 0.37 -2.3
736,404 + Psyr_0648 0.41 +2.5
736,404 + Psyr_0648 0.41 -1.8
736,405 - Psyr_0648 0.41 +0.8
736,405 - Psyr_0648 0.41 +0.2
736,405 - Psyr_0648 0.41 +0.4
736,405 - Psyr_0648 0.41 +1.2
736,405 - Psyr_0648 0.41 -0.8
736,448 + Psyr_0648 0.45 -0.6
736,448 + Psyr_0648 0.45 +0.1
736,449 - Psyr_0648 0.45 -2.1
736,859 + Psyr_0648 0.85 -1.8
736,859 + Psyr_0648 0.85 +1.8
736,860 - Psyr_0648 0.85 -0.7
736,860 - Psyr_0648 0.85 -1.4
736,860 - Psyr_0648 0.85 +0.1
736,884 + Psyr_0648 0.88 -1.3
736,884 + Psyr_0648 0.88 +0.4
736,885 - Psyr_0648 0.88 -2.4
736,885 - Psyr_0648 0.88 +1.8
736,885 - Psyr_0648 0.88 -2.1
736,885 - Psyr_0648 0.88 -0.2
736,932 + +0.8
736,932 + -0.7
736,932 + -2.6
736,933 - +0.6

Or see this region's nucleotide sequence