Experiment: Citric Acid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0463 and Psyr_0464 are separated by 134 nucleotides Psyr_0464 and Psyr_0465 overlap by 1 nucleotides Psyr_0465 and Psyr_0466 are separated by 10 nucleotides
Psyr_0463: Psyr_0463 - Gluconate transporter, at 501,300 to 502,757
_0463
Psyr_0464: Psyr_0464 - hypothetical protein, at 502,892 to 503,530
_0464
Psyr_0465: Psyr_0465 - HopAN1 protein, at 503,530 to 504,819
_0465
Psyr_0466: Psyr_0466 - 3-hydroxyisobutyrate dehydrogenase, at 504,830 to 505,735
_0466
Position (kb) 503
504
505 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 502.687 kb on + strand at 502.688 kb on - strand at 502.842 kb on - strand at 502.842 kb on - strand at 503.010 kb on + strand, within Psyr_0464 at 503.010 kb on + strand, within Psyr_0464 at 503.149 kb on + strand, within Psyr_0464 at 503.461 kb on + strand, within Psyr_0464 at 503.475 kb on + strand at 503.476 kb on - strand at 503.476 kb on - strand at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.865 kb on - strand, within Psyr_0465 at 503.873 kb on - strand, within Psyr_0465 at 504.176 kb on + strand, within Psyr_0465 at 504.176 kb on + strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.177 kb on - strand, within Psyr_0465 at 504.284 kb on + strand, within Psyr_0465 at 504.284 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.548 kb on + strand, within Psyr_0465 at 504.549 kb on - strand, within Psyr_0465 at 504.549 kb on - strand, within Psyr_0465 at 504.559 kb on + strand, within Psyr_0465 at 504.559 kb on + strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 504.560 kb on - strand, within Psyr_0465 at 505.044 kb on + strand, within Psyr_0466 at 505.119 kb on + strand, within Psyr_0466 at 505.119 kb on + strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.120 kb on - strand, within Psyr_0466 at 505.187 kb on + strand, within Psyr_0466 at 505.187 kb on + strand, within Psyr_0466 at 505.188 kb on - strand, within Psyr_0466 at 505.188 kb on - strand, within Psyr_0466 at 505.254 kb on + strand, within Psyr_0466 at 505.383 kb on + strand, within Psyr_0466 at 505.384 kb on - strand, within Psyr_0466 at 505.536 kb on - strand, within Psyr_0466 at 505.740 kb on + strand at 505.788 kb on + strand at 505.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid (C) remove 502,687 + +0.3 502,688 - -0.7 502,842 - -2.0 502,842 - +0.6 503,010 + Psyr_0464 0.18 -0.5 503,010 + Psyr_0464 0.18 -2.3 503,149 + Psyr_0464 0.40 +0.1 503,461 + Psyr_0464 0.89 -0.9 503,475 + -1.3 503,476 - +1.3 503,476 - +0.3 503,865 - Psyr_0465 0.26 +1.0 503,865 - Psyr_0465 0.26 -0.5 503,865 - Psyr_0465 0.26 +0.4 503,865 - Psyr_0465 0.26 -2.7 503,873 - Psyr_0465 0.27 -0.7 504,176 + Psyr_0465 0.50 -0.0 504,176 + Psyr_0465 0.50 +1.4 504,177 - Psyr_0465 0.50 -0.3 504,177 - Psyr_0465 0.50 +1.6 504,177 - Psyr_0465 0.50 +4.6 504,177 - Psyr_0465 0.50 +1.9 504,284 + Psyr_0465 0.58 +1.3 504,284 + Psyr_0465 0.58 +0.9 504,548 + Psyr_0465 0.79 +0.6 504,548 + Psyr_0465 0.79 +0.3 504,548 + Psyr_0465 0.79 +0.8 504,548 + Psyr_0465 0.79 +1.0 504,548 + Psyr_0465 0.79 +3.3 504,548 + Psyr_0465 0.79 -0.9 504,549 - Psyr_0465 0.79 +0.5 504,549 - Psyr_0465 0.79 +1.9 504,559 + Psyr_0465 0.80 +1.1 504,559 + Psyr_0465 0.80 +0.0 504,560 - Psyr_0465 0.80 +0.7 504,560 - Psyr_0465 0.80 -1.5 504,560 - Psyr_0465 0.80 +0.7 505,044 + Psyr_0466 0.24 -0.0 505,119 + Psyr_0466 0.32 +0.3 505,119 + Psyr_0466 0.32 -1.7 505,120 - Psyr_0466 0.32 +0.1 505,120 - Psyr_0466 0.32 +1.5 505,120 - Psyr_0466 0.32 -2.3 505,120 - Psyr_0466 0.32 +1.9 505,187 + Psyr_0466 0.39 +0.4 505,187 + Psyr_0466 0.39 +3.8 505,188 - Psyr_0466 0.40 -0.5 505,188 - Psyr_0466 0.40 -0.7 505,254 + Psyr_0466 0.47 -1.9 505,383 + Psyr_0466 0.61 -1.9 505,384 - Psyr_0466 0.61 -0.1 505,536 - Psyr_0466 0.78 -0.8 505,740 + +0.8 505,788 + -1.3 505,789 - -0.1
Or see this region's nucleotide sequence