Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08275

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS08270 and MMP_RS08275 are separated by 69 nucleotidesMMP_RS08275 and MMP_RS08280 are separated by 19 nucleotidesMMP_RS08280 and MMP_RS08285 are separated by 23 nucleotides MMP_RS08270: MMP_RS08270 - formylmethanofuran--tetrahydromethanopterin N-formyltransferase, at 1,556,252 to 1,557,160 _RS08270 MMP_RS08275: MMP_RS08275 - hypothetical protein, at 1,557,230 to 1,557,904 _RS08275 MMP_RS08280: MMP_RS08280 - proteasome assembly chaperone family protein, at 1,557,924 to 1,558,676 _RS08280 MMP_RS08285: MMP_RS08285 - serine/threonine protein kinase, at 1,558,700 to 1,559,377 _RS08285 Position (kb) 1557 1558Strain fitness (log2 ratio) -2 -1 0 1at 1556.269 kb on + strandat 1556.889 kb on + strandat 1557.172 kb on - strandat 1557.173 kb on + strandat 1557.179 kb on + strandat 1557.209 kb on + strandat 1557.212 kb on - strandat 1557.275 kb on + strandat 1557.300 kb on + strand, within MMP_RS08275at 1557.300 kb on + strand, within MMP_RS08275at 1557.300 kb on + strand, within MMP_RS08275at 1557.525 kb on - strand, within MMP_RS08275at 1557.526 kb on + strand, within MMP_RS08275at 1557.526 kb on + strand, within MMP_RS08275at 1557.530 kb on - strand, within MMP_RS08275at 1557.551 kb on - strand, within MMP_RS08275at 1557.552 kb on + strand, within MMP_RS08275at 1557.552 kb on + strand, within MMP_RS08275at 1557.556 kb on + strand, within MMP_RS08275at 1557.556 kb on + strand, within MMP_RS08275at 1557.613 kb on + strand, within MMP_RS08275at 1557.613 kb on + strand, within MMP_RS08275at 1557.614 kb on - strand, within MMP_RS08275at 1557.615 kb on + strand, within MMP_RS08275at 1557.636 kb on - strand, within MMP_RS08275at 1557.808 kb on - strand, within MMP_RS08275at 1557.935 kb on + strandat 1557.935 kb on + strandat 1557.935 kb on + strandat 1557.940 kb on + strandat 1558.398 kb on - strand, within MMP_RS08280at 1558.528 kb on + strand, within MMP_RS08280at 1558.671 kb on - strandat 1558.749 kb on + strandat 1558.796 kb on - strand, within MMP_RS08285at 1558.796 kb on - strand, within MMP_RS08285at 1558.797 kb on + strand, within MMP_RS08285at 1558.799 kb on + strand, within MMP_RS08285at 1558.799 kb on + strand, within MMP_RS08285at 1558.800 kb on - strand, within MMP_RS08285at 1558.801 kb on + strand, within MMP_RS08285at 1558.801 kb on + strand, within MMP_RS08285at 1558.801 kb on + strand, within MMP_RS08285at 1558.880 kb on + strand, within MMP_RS08285

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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1,556,269 + -0.2
1,556,889 + -0.5
1,557,172 - +0.2
1,557,173 + +0.8
1,557,179 + -2.3
1,557,209 + -0.5
1,557,212 - -0.5
1,557,275 + -0.4
1,557,300 + MMP_RS08275 0.10 -2.0
1,557,300 + MMP_RS08275 0.10 -1.5
1,557,300 + MMP_RS08275 0.10 -0.6
1,557,525 - MMP_RS08275 0.44 +0.1
1,557,526 + MMP_RS08275 0.44 -0.1
1,557,526 + MMP_RS08275 0.44 +1.0
1,557,530 - MMP_RS08275 0.44 +0.9
1,557,551 - MMP_RS08275 0.48 -0.8
1,557,552 + MMP_RS08275 0.48 -0.3
1,557,552 + MMP_RS08275 0.48 -0.5
1,557,556 + MMP_RS08275 0.48 -0.1
1,557,556 + MMP_RS08275 0.48 -1.7
1,557,613 + MMP_RS08275 0.57 -0.9
1,557,613 + MMP_RS08275 0.57 -1.2
1,557,614 - MMP_RS08275 0.57 -0.1
1,557,615 + MMP_RS08275 0.57 +0.2
1,557,636 - MMP_RS08275 0.60 -1.7
1,557,808 - MMP_RS08275 0.86 +0.0
1,557,935 + -1.8
1,557,935 + -0.2
1,557,935 + -1.4
1,557,940 + +0.8
1,558,398 - MMP_RS08280 0.63 +1.4
1,558,528 + MMP_RS08280 0.80 +0.5
1,558,671 - +0.9
1,558,749 + +0.3
1,558,796 - MMP_RS08285 0.14 -0.3
1,558,796 - MMP_RS08285 0.14 -0.5
1,558,797 + MMP_RS08285 0.14 -0.3
1,558,799 + MMP_RS08285 0.15 -1.5
1,558,799 + MMP_RS08285 0.15 -2.1
1,558,800 - MMP_RS08285 0.15 +0.4
1,558,801 + MMP_RS08285 0.15 -0.3
1,558,801 + MMP_RS08285 0.15 +0.8
1,558,801 + MMP_RS08285 0.15 -0.4
1,558,880 + MMP_RS08285 0.27 -0.7

Or see this region's nucleotide sequence