Strain Fitness in Methanococcus maripaludis S2 around MMP_RS06915

Experiment: Formate N-free with 2mM Adenosine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS06905 and MMP_RS06910 are separated by 18 nucleotidesMMP_RS06910 and MMP_RS06915 are separated by 102 nucleotidesMMP_RS06915 and MMP_RS06920 are separated by 13 nucleotides MMP_RS06905: MMP_RS06905 - hypothetical protein, at 1,318,845 to 1,319,039 _RS06905 MMP_RS06910: MMP_RS06910 - RlmF-related methyltransferase, at 1,319,058 to 1,319,852 _RS06910 MMP_RS06915: MMP_RS06915 - metallophosphoesterase, at 1,319,955 to 1,321,073 _RS06915 MMP_RS06920: MMP_RS06920 - AAA family ATPase, at 1,321,087 to 1,324,068 _RS06920 Position (kb) 1319 1320 1321 1322Strain fitness (log2 ratio) -1 0 1at 1318.973 kb on - strand, within MMP_RS06905at 1318.974 kb on + strand, within MMP_RS06905at 1319.033 kb on + strandat 1319.037 kb on - strandat 1319.351 kb on + strand, within MMP_RS06910at 1319.451 kb on + strand, within MMP_RS06910at 1319.451 kb on + strand, within MMP_RS06910at 1319.468 kb on - strand, within MMP_RS06910at 1319.471 kb on - strand, within MMP_RS06910at 1319.711 kb on - strand, within MMP_RS06910at 1319.717 kb on + strand, within MMP_RS06910at 1319.736 kb on + strand, within MMP_RS06910at 1319.770 kb on - strand, within MMP_RS06910at 1319.771 kb on + strand, within MMP_RS06910at 1319.886 kb on - strandat 1319.886 kb on - strandat 1319.891 kb on - strandat 1319.892 kb on + strandat 1319.895 kb on + strandat 1319.895 kb on + strandat 1319.934 kb on + strandat 1320.050 kb on - strandat 1320.296 kb on - strand, within MMP_RS06915at 1320.296 kb on - strand, within MMP_RS06915at 1320.342 kb on - strand, within MMP_RS06915at 1320.342 kb on - strand, within MMP_RS06915at 1320.646 kb on + strand, within MMP_RS06915at 1320.678 kb on + strand, within MMP_RS06915at 1320.808 kb on - strand, within MMP_RS06915at 1321.005 kb on + strandat 1321.053 kb on - strandat 1321.068 kb on - strandat 1321.328 kb on + strandat 1321.374 kb on + strandat 1321.591 kb on + strand, within MMP_RS06920at 1321.837 kb on + strand, within MMP_RS06920at 1321.895 kb on - strand, within MMP_RS06920at 1321.920 kb on + strand, within MMP_RS06920at 1321.952 kb on - strand, within MMP_RS06920at 1321.953 kb on + strand, within MMP_RS06920at 1322.012 kb on + strand, within MMP_RS06920at 1322.026 kb on + strand, within MMP_RS06920at 1322.055 kb on + strand, within MMP_RS06920

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine
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1,318,973 - MMP_RS06905 0.66 -1.1
1,318,974 + MMP_RS06905 0.66 -0.6
1,319,033 + -1.3
1,319,037 - -0.5
1,319,351 + MMP_RS06910 0.37 -0.7
1,319,451 + MMP_RS06910 0.49 +0.0
1,319,451 + MMP_RS06910 0.49 -0.7
1,319,468 - MMP_RS06910 0.52 -0.6
1,319,471 - MMP_RS06910 0.52 +0.3
1,319,711 - MMP_RS06910 0.82 -1.1
1,319,717 + MMP_RS06910 0.83 -0.5
1,319,736 + MMP_RS06910 0.85 -0.9
1,319,770 - MMP_RS06910 0.90 -0.5
1,319,771 + MMP_RS06910 0.90 +0.6
1,319,886 - +1.1
1,319,886 - +0.1
1,319,891 - +0.3
1,319,892 + -0.0
1,319,895 + -0.0
1,319,895 + +0.7
1,319,934 + -0.8
1,320,050 - -1.7
1,320,296 - MMP_RS06915 0.30 -0.7
1,320,296 - MMP_RS06915 0.30 -0.7
1,320,342 - MMP_RS06915 0.35 -0.8
1,320,342 - MMP_RS06915 0.35 -1.2
1,320,646 + MMP_RS06915 0.62 -0.0
1,320,678 + MMP_RS06915 0.65 -0.5
1,320,808 - MMP_RS06915 0.76 -1.3
1,321,005 + +0.4
1,321,053 - +0.7
1,321,068 - +0.3
1,321,328 + -0.1
1,321,374 + -1.1
1,321,591 + MMP_RS06920 0.17 -0.7
1,321,837 + MMP_RS06920 0.25 +0.1
1,321,895 - MMP_RS06920 0.27 +0.1
1,321,920 + MMP_RS06920 0.28 -0.8
1,321,952 - MMP_RS06920 0.29 -0.1
1,321,953 + MMP_RS06920 0.29 -1.4
1,322,012 + MMP_RS06920 0.31 -0.3
1,322,026 + MMP_RS06920 0.31 -0.3
1,322,055 + MMP_RS06920 0.32 -0.4

Or see this region's nucleotide sequence