Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS06905 and MMP_RS06910 are separated by 18 nucleotides MMP_RS06910 and MMP_RS06915 are separated by 102 nucleotides MMP_RS06915 and MMP_RS06920 are separated by 13 nucleotides
MMP_RS06905: MMP_RS06905 - hypothetical protein, at 1,318,845 to 1,319,039
_RS06905
MMP_RS06910: MMP_RS06910 - RlmF-related methyltransferase, at 1,319,058 to 1,319,852
_RS06910
MMP_RS06915: MMP_RS06915 - metallophosphoesterase, at 1,319,955 to 1,321,073
_RS06915
MMP_RS06920: MMP_RS06920 - AAA family ATPase, at 1,321,087 to 1,324,068
_RS06920
Position (kb)
1319
1320
1321
1322 Strain fitness (log2 ratio)
-1
0
1 at 1318.973 kb on - strand, within MMP_RS06905 at 1318.974 kb on + strand, within MMP_RS06905 at 1319.033 kb on + strand at 1319.037 kb on - strand at 1319.351 kb on + strand, within MMP_RS06910 at 1319.451 kb on + strand, within MMP_RS06910 at 1319.451 kb on + strand, within MMP_RS06910 at 1319.468 kb on - strand, within MMP_RS06910 at 1319.471 kb on - strand, within MMP_RS06910 at 1319.711 kb on - strand, within MMP_RS06910 at 1319.717 kb on + strand, within MMP_RS06910 at 1319.736 kb on + strand, within MMP_RS06910 at 1319.770 kb on - strand, within MMP_RS06910 at 1319.771 kb on + strand, within MMP_RS06910 at 1319.886 kb on - strand at 1319.886 kb on - strand at 1319.891 kb on - strand at 1319.892 kb on + strand at 1319.895 kb on + strand at 1319.895 kb on + strand at 1319.934 kb on + strand at 1320.050 kb on - strand at 1320.296 kb on - strand, within MMP_RS06915 at 1320.296 kb on - strand, within MMP_RS06915 at 1320.342 kb on - strand, within MMP_RS06915 at 1320.342 kb on - strand, within MMP_RS06915 at 1320.646 kb on + strand, within MMP_RS06915 at 1320.678 kb on + strand, within MMP_RS06915 at 1320.808 kb on - strand, within MMP_RS06915 at 1321.005 kb on + strand at 1321.053 kb on - strand at 1321.068 kb on - strand at 1321.328 kb on + strand at 1321.374 kb on + strand at 1321.591 kb on + strand, within MMP_RS06920 at 1321.837 kb on + strand, within MMP_RS06920 at 1321.895 kb on - strand, within MMP_RS06920 at 1321.920 kb on + strand, within MMP_RS06920 at 1321.952 kb on - strand, within MMP_RS06920 at 1321.953 kb on + strand, within MMP_RS06920 at 1322.012 kb on + strand, within MMP_RS06920 at 1322.026 kb on + strand, within MMP_RS06920 at 1322.055 kb on + strand, within MMP_RS06920
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 1,318,973 - MMP_RS06905 0.66 -1.1 1,318,974 + MMP_RS06905 0.66 -0.6 1,319,033 + -1.3 1,319,037 - -0.5 1,319,351 + MMP_RS06910 0.37 -0.7 1,319,451 + MMP_RS06910 0.49 +0.0 1,319,451 + MMP_RS06910 0.49 -0.7 1,319,468 - MMP_RS06910 0.52 -0.6 1,319,471 - MMP_RS06910 0.52 +0.3 1,319,711 - MMP_RS06910 0.82 -1.1 1,319,717 + MMP_RS06910 0.83 -0.5 1,319,736 + MMP_RS06910 0.85 -0.9 1,319,770 - MMP_RS06910 0.90 -0.5 1,319,771 + MMP_RS06910 0.90 +0.6 1,319,886 - +1.1 1,319,886 - +0.1 1,319,891 - +0.3 1,319,892 + -0.0 1,319,895 + -0.0 1,319,895 + +0.7 1,319,934 + -0.8 1,320,050 - -1.7 1,320,296 - MMP_RS06915 0.30 -0.7 1,320,296 - MMP_RS06915 0.30 -0.7 1,320,342 - MMP_RS06915 0.35 -0.8 1,320,342 - MMP_RS06915 0.35 -1.2 1,320,646 + MMP_RS06915 0.62 -0.0 1,320,678 + MMP_RS06915 0.65 -0.5 1,320,808 - MMP_RS06915 0.76 -1.3 1,321,005 + +0.4 1,321,053 - +0.7 1,321,068 - +0.3 1,321,328 + -0.1 1,321,374 + -1.1 1,321,591 + MMP_RS06920 0.17 -0.7 1,321,837 + MMP_RS06920 0.25 +0.1 1,321,895 - MMP_RS06920 0.27 +0.1 1,321,920 + MMP_RS06920 0.28 -0.8 1,321,952 - MMP_RS06920 0.29 -0.1 1,321,953 + MMP_RS06920 0.29 -1.4 1,322,012 + MMP_RS06920 0.31 -0.3 1,322,026 + MMP_RS06920 0.31 -0.3 1,322,055 + MMP_RS06920 0.32 -0.4
Or see this region's nucleotide sequence