Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04310 and MMP_RS04315 are separated by 268 nucleotides MMP_RS04315 and MMP_RS04320 are separated by 24 nucleotides MMP_RS04320 and MMP_RS04325 are separated by 123 nucleotides
MMP_RS04310: MMP_RS04310 - hypothetical protein, at 822,505 to 822,849
_RS04310
MMP_RS04315: MMP_RS04315 - corrinoid protein, at 823,118 to 823,777
_RS04315
MMP_RS04320: MMP_RS04320 - uroporphyrinogen decarboxylase family protein, at 823,802 to 824,893
_RS04320
MMP_RS04325: MMP_RS04325 - MtaA/CmuA family methyltransferase, at 825,017 to 826,045
_RS04325
Position (kb) 823
824
825 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 822.861 kb on + strand at 822.861 kb on + strand at 822.865 kb on + strand at 822.865 kb on + strand at 822.869 kb on - strand at 822.870 kb on + strand at 822.870 kb on + strand at 822.875 kb on + strand at 822.886 kb on - strand at 822.896 kb on - strand at 822.896 kb on - strand at 822.897 kb on + strand at 822.897 kb on + strand at 822.899 kb on - strand at 822.900 kb on + strand at 822.900 kb on + strand at 822.900 kb on + strand at 822.902 kb on + strand at 822.902 kb on + strand at 822.902 kb on + strand at 822.907 kb on - strand at 822.907 kb on - strand at 822.953 kb on - strand at 822.970 kb on - strand at 822.971 kb on + strand at 822.973 kb on + strand at 822.978 kb on + strand at 822.983 kb on + strand at 822.985 kb on - strand at 823.141 kb on + strand at 823.143 kb on - strand at 823.265 kb on + strand, within MMP_RS04315 at 823.286 kb on - strand, within MMP_RS04315 at 823.318 kb on + strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.340 kb on - strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.341 kb on + strand, within MMP_RS04315 at 823.360 kb on + strand, within MMP_RS04315 at 823.371 kb on - strand, within MMP_RS04315 at 823.491 kb on + strand, within MMP_RS04315 at 823.547 kb on + strand, within MMP_RS04315 at 823.645 kb on - strand, within MMP_RS04315 at 823.983 kb on + strand, within MMP_RS04320 at 824.026 kb on + strand, within MMP_RS04320 at 824.078 kb on + strand, within MMP_RS04320 at 824.088 kb on - strand, within MMP_RS04320 at 824.224 kb on - strand, within MMP_RS04320 at 824.299 kb on + strand, within MMP_RS04320 at 824.320 kb on - strand, within MMP_RS04320 at 824.395 kb on - strand, within MMP_RS04320 at 824.428 kb on + strand, within MMP_RS04320 at 824.428 kb on + strand, within MMP_RS04320 at 824.428 kb on + strand, within MMP_RS04320 at 824.462 kb on - strand, within MMP_RS04320 at 824.462 kb on - strand, within MMP_RS04320 at 824.463 kb on + strand, within MMP_RS04320 at 824.466 kb on - strand, within MMP_RS04320 at 824.487 kb on - strand, within MMP_RS04320 at 824.487 kb on - strand, within MMP_RS04320 at 824.556 kb on - strand, within MMP_RS04320 at 824.569 kb on + strand, within MMP_RS04320 at 824.710 kb on - strand, within MMP_RS04320 at 824.711 kb on + strand, within MMP_RS04320 at 824.711 kb on + strand, within MMP_RS04320 at 824.865 kb on - strand at 824.984 kb on + strand at 824.986 kb on + strand at 825.084 kb on - strand at 825.085 kb on + strand at 825.106 kb on - strand at 825.142 kb on + strand, within MMP_RS04325 at 825.249 kb on - strand, within MMP_RS04325 at 825.249 kb on - strand, within MMP_RS04325 at 825.250 kb on + strand, within MMP_RS04325 at 825.310 kb on - strand, within MMP_RS04325 at 825.589 kb on + strand, within MMP_RS04325 at 825.589 kb on + strand, within MMP_RS04325 at 825.731 kb on + strand, within MMP_RS04325 at 825.731 kb on + strand, within MMP_RS04325 at 825.798 kb on - strand, within MMP_RS04325 at 825.814 kb on - strand, within MMP_RS04325
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 822,861 + +0.0 822,861 + -2.9 822,865 + -0.3 822,865 + -1.6 822,869 - -0.8 822,870 + +0.2 822,870 + +1.8 822,875 + +0.5 822,886 - -0.9 822,896 - +0.5 822,896 - -1.5 822,897 + -3.0 822,897 + -0.8 822,899 - -0.2 822,900 + +0.3 822,900 + +0.7 822,900 + +1.3 822,902 + +1.0 822,902 + -1.3 822,902 + +0.6 822,907 - +0.5 822,907 - +1.1 822,953 - +0.4 822,970 - -1.4 822,971 + -0.9 822,973 + +0.2 822,978 + +0.4 822,983 + -0.4 822,985 - +0.5 823,141 + -0.1 823,143 - +0.0 823,265 + MMP_RS04315 0.22 +0.8 823,286 - MMP_RS04315 0.25 +1.1 823,318 + MMP_RS04315 0.30 -0.6 823,340 - MMP_RS04315 0.34 +0.9 823,340 - MMP_RS04315 0.34 -0.5 823,340 - MMP_RS04315 0.34 +1.4 823,340 - MMP_RS04315 0.34 -1.3 823,341 + MMP_RS04315 0.34 -0.5 823,341 + MMP_RS04315 0.34 -0.2 823,341 + MMP_RS04315 0.34 -1.6 823,341 + MMP_RS04315 0.34 -0.8 823,360 + MMP_RS04315 0.37 -0.1 823,371 - MMP_RS04315 0.38 +0.1 823,491 + MMP_RS04315 0.57 +0.2 823,547 + MMP_RS04315 0.65 -0.7 823,645 - MMP_RS04315 0.80 +1.4 823,983 + MMP_RS04320 0.17 +0.2 824,026 + MMP_RS04320 0.21 -0.1 824,078 + MMP_RS04320 0.25 -1.5 824,088 - MMP_RS04320 0.26 -0.1 824,224 - MMP_RS04320 0.39 -1.4 824,299 + MMP_RS04320 0.46 +0.0 824,320 - MMP_RS04320 0.47 -1.7 824,395 - MMP_RS04320 0.54 -0.5 824,428 + MMP_RS04320 0.57 -0.6 824,428 + MMP_RS04320 0.57 -0.4 824,428 + MMP_RS04320 0.57 -0.3 824,462 - MMP_RS04320 0.60 -0.3 824,462 - MMP_RS04320 0.60 +0.2 824,463 + MMP_RS04320 0.61 +1.4 824,466 - MMP_RS04320 0.61 -0.2 824,487 - MMP_RS04320 0.63 -1.1 824,487 - MMP_RS04320 0.63 -1.7 824,556 - MMP_RS04320 0.69 -1.3 824,569 + MMP_RS04320 0.70 +0.1 824,710 - MMP_RS04320 0.83 -0.6 824,711 + MMP_RS04320 0.83 +0.9 824,711 + MMP_RS04320 0.83 -1.1 824,865 - -0.3 824,984 + +0.0 824,986 + +0.5 825,084 - -0.5 825,085 + -1.3 825,106 - -0.7 825,142 + MMP_RS04325 0.12 +0.2 825,249 - MMP_RS04325 0.23 +0.6 825,249 - MMP_RS04325 0.23 -0.2 825,250 + MMP_RS04325 0.23 +0.2 825,310 - MMP_RS04325 0.28 -0.2 825,589 + MMP_RS04325 0.56 +1.2 825,589 + MMP_RS04325 0.56 -1.8 825,731 + MMP_RS04325 0.69 -0.3 825,731 + MMP_RS04325 0.69 +1.6 825,798 - MMP_RS04325 0.76 +5.8 825,814 - MMP_RS04325 0.77 -0.1
Or see this region's nucleotide sequence