Experiment: Formate N-free with 2mM Adenosine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04010 and MMP_RS04015 are separated by 0 nucleotides MMP_RS04015 and MMP_RS04020 are separated by 11 nucleotides MMP_RS04020 and MMP_RS04025 are separated by 9 nucleotides
MMP_RS04010: MMP_RS04010 - ABC transporter substrate-binding protein, at 761,693 to 762,445
_RS04010
MMP_RS04015: MMP_RS04015 - hypothetical protein, at 762,446 to 762,937
_RS04015
MMP_RS04020: MMP_RS04020 - hypothetical protein, at 762,949 to 763,713
_RS04020
MMP_RS04025: MMP_RS04025 - ATPase AAA, at 763,723 to 765,075
_RS04025
Position (kb) 762
763
764 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 761.970 kb on - strand, within MMP_RS04010 at 761.975 kb on - strand, within MMP_RS04010 at 761.976 kb on + strand, within MMP_RS04010 at 762.034 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.038 kb on - strand, within MMP_RS04010 at 762.048 kb on - strand, within MMP_RS04010 at 762.068 kb on + strand, within MMP_RS04010 at 762.216 kb on - strand, within MMP_RS04010 at 762.250 kb on - strand, within MMP_RS04010 at 762.251 kb on + strand, within MMP_RS04010 at 762.253 kb on - strand, within MMP_RS04010 at 762.254 kb on + strand, within MMP_RS04010 at 762.263 kb on - strand, within MMP_RS04010 at 762.267 kb on - strand, within MMP_RS04010 at 762.268 kb on + strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.278 kb on - strand, within MMP_RS04010 at 762.323 kb on - strand, within MMP_RS04010 at 762.323 kb on - strand, within MMP_RS04010 at 762.346 kb on - strand, within MMP_RS04010 at 762.411 kb on - strand at 762.415 kb on - strand at 762.420 kb on - strand at 762.421 kb on + strand at 762.437 kb on + strand at 762.437 kb on + strand at 762.447 kb on - strand at 762.447 kb on - strand at 762.447 kb on - strand at 762.448 kb on + strand at 762.751 kb on - strand, within MMP_RS04015 at 762.824 kb on + strand, within MMP_RS04015 at 762.824 kb on + strand, within MMP_RS04015 at 762.950 kb on - strand at 763.085 kb on - strand, within MMP_RS04020 at 763.184 kb on + strand, within MMP_RS04020 at 763.224 kb on + strand, within MMP_RS04020 at 763.276 kb on - strand, within MMP_RS04020 at 763.280 kb on + strand, within MMP_RS04020 at 763.282 kb on + strand, within MMP_RS04020 at 763.373 kb on + strand, within MMP_RS04020 at 763.490 kb on + strand, within MMP_RS04020 at 763.530 kb on + strand, within MMP_RS04020 at 763.688 kb on + strand at 763.725 kb on + strand at 763.792 kb on + strand at 763.876 kb on - strand, within MMP_RS04025 at 763.913 kb on + strand, within MMP_RS04025 at 763.976 kb on - strand, within MMP_RS04025 at 764.056 kb on + strand, within MMP_RS04025 at 764.086 kb on - strand, within MMP_RS04025 at 764.289 kb on - strand, within MMP_RS04025 at 764.407 kb on - strand, within MMP_RS04025 at 764.430 kb on - strand, within MMP_RS04025 at 764.442 kb on - strand, within MMP_RS04025 at 764.500 kb on - strand, within MMP_RS04025 at 764.500 kb on - strand, within MMP_RS04025 at 764.594 kb on + strand, within MMP_RS04025 at 764.611 kb on - strand, within MMP_RS04025 at 764.616 kb on - strand, within MMP_RS04025 at 764.616 kb on - strand, within MMP_RS04025 at 764.617 kb on + strand, within MMP_RS04025 at 764.617 kb on + strand, within MMP_RS04025 at 764.620 kb on + strand, within MMP_RS04025 at 764.620 kb on + strand, within MMP_RS04025 at 764.622 kb on + strand, within MMP_RS04025 at 764.641 kb on + strand, within MMP_RS04025
Per-strain Table
Position Strand Gene LocusTag Fraction Formate N-free with 2mM Adenosine remove 761,970 - MMP_RS04010 0.37 -1.3 761,975 - MMP_RS04010 0.37 -0.6 761,976 + MMP_RS04010 0.38 +1.3 762,034 - MMP_RS04010 0.45 +0.2 762,038 - MMP_RS04010 0.46 -0.6 762,038 - MMP_RS04010 0.46 +0.6 762,038 - MMP_RS04010 0.46 -0.7 762,048 - MMP_RS04010 0.47 +0.7 762,068 + MMP_RS04010 0.50 -0.7 762,216 - MMP_RS04010 0.69 +0.3 762,250 - MMP_RS04010 0.74 +0.3 762,251 + MMP_RS04010 0.74 -2.3 762,253 - MMP_RS04010 0.74 +1.5 762,254 + MMP_RS04010 0.75 +0.7 762,263 - MMP_RS04010 0.76 +0.2 762,267 - MMP_RS04010 0.76 +0.3 762,268 + MMP_RS04010 0.76 -1.6 762,278 - MMP_RS04010 0.78 +0.0 762,278 - MMP_RS04010 0.78 -0.9 762,278 - MMP_RS04010 0.78 +0.4 762,323 - MMP_RS04010 0.84 +0.1 762,323 - MMP_RS04010 0.84 +0.4 762,346 - MMP_RS04010 0.87 -0.6 762,411 - +0.8 762,415 - +2.2 762,420 - -0.1 762,421 + -0.2 762,437 + -0.8 762,437 + -2.7 762,447 - -0.2 762,447 - -0.6 762,447 - +0.9 762,448 + -0.3 762,751 - MMP_RS04015 0.62 -2.6 762,824 + MMP_RS04015 0.77 +0.3 762,824 + MMP_RS04015 0.77 -3.2 762,950 - -1.0 763,085 - MMP_RS04020 0.18 -1.1 763,184 + MMP_RS04020 0.31 -0.1 763,224 + MMP_RS04020 0.36 -0.6 763,276 - MMP_RS04020 0.43 -1.3 763,280 + MMP_RS04020 0.43 -1.3 763,282 + MMP_RS04020 0.44 -2.1 763,373 + MMP_RS04020 0.55 -0.7 763,490 + MMP_RS04020 0.71 +1.0 763,530 + MMP_RS04020 0.76 -0.0 763,688 + -0.6 763,725 + +0.1 763,792 + +0.4 763,876 - MMP_RS04025 0.11 +1.2 763,913 + MMP_RS04025 0.14 -0.8 763,976 - MMP_RS04025 0.19 +0.6 764,056 + MMP_RS04025 0.25 -0.8 764,086 - MMP_RS04025 0.27 -0.4 764,289 - MMP_RS04025 0.42 -0.2 764,407 - MMP_RS04025 0.51 -0.7 764,430 - MMP_RS04025 0.52 -2.4 764,442 - MMP_RS04025 0.53 -0.9 764,500 - MMP_RS04025 0.57 +0.5 764,500 - MMP_RS04025 0.57 +0.1 764,594 + MMP_RS04025 0.64 +0.3 764,611 - MMP_RS04025 0.66 +0.2 764,616 - MMP_RS04025 0.66 -1.3 764,616 - MMP_RS04025 0.66 +0.8 764,617 + MMP_RS04025 0.66 -0.1 764,617 + MMP_RS04025 0.66 +1.3 764,620 + MMP_RS04025 0.66 +0.4 764,620 + MMP_RS04025 0.66 -0.6 764,622 + MMP_RS04025 0.66 +0.3 764,641 + MMP_RS04025 0.68 -0.4
Or see this region's nucleotide sequence