Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4885

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4882 and Psyr_4883 are separated by 40 nucleotidesPsyr_4883 and Psyr_4884 are separated by 2 nucleotidesPsyr_4884 and Psyr_4885 are separated by 99 nucleotidesPsyr_4885 and Psyr_4886 are separated by 152 nucleotides Psyr_4882: Psyr_4882 - protein translocase subunit secB, at 5,792,954 to 5,793,442 _4882 Psyr_4883: Psyr_4883 - Glutaredoxin, at 5,793,483 to 5,793,734 _4883 Psyr_4884: Psyr_4884 - Rhodanese-like protein, at 5,793,737 to 5,794,150 _4884 Psyr_4885: Psyr_4885 - phosphoglycerate mutase, at 5,794,250 to 5,795,839 _4885 Psyr_4886: Psyr_4886 - Peptidase M23B, at 5,795,992 to 5,797,317 _4886 Position (kb) 5794 5795 5796Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5793.252 kb on + strand, within Psyr_4882at 5793.252 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.369 kb on + strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.370 kb on - strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.373 kb on + strand, within Psyr_4882at 5793.374 kb on - strand, within Psyr_4882at 5793.462 kb on - strandat 5793.584 kb on + strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.585 kb on - strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.687 kb on + strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.688 kb on - strand, within Psyr_4883at 5793.694 kb on + strand, within Psyr_4883at 5793.694 kb on + strand, within Psyr_4883at 5793.704 kb on - strand, within Psyr_4883at 5793.715 kb on + strandat 5793.715 kb on + strandat 5793.864 kb on - strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.885 kb on + strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.886 kb on - strand, within Psyr_4884at 5793.914 kb on + strand, within Psyr_4884at 5793.914 kb on + strand, within Psyr_4884at 5793.914 kb on + strand, within Psyr_4884at 5793.915 kb on - strand, within Psyr_4884at 5793.915 kb on - strand, within Psyr_4884at 5793.963 kb on + strand, within Psyr_4884at 5793.964 kb on - strand, within Psyr_4884at 5794.113 kb on + strandat 5794.113 kb on + strandat 5794.114 kb on - strandat 5794.154 kb on + strandat 5794.155 kb on - strandat 5794.155 kb on - strandat 5794.184 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.186 kb on + strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.187 kb on - strandat 5794.247 kb on - strandat 5794.247 kb on - strandat 5794.264 kb on + strandat 5794.264 kb on + strandat 5794.264 kb on + strandat 5794.264 kb on + strandat 5794.265 kb on - strandat 5794.306 kb on + strandat 5794.306 kb on + strandat 5794.306 kb on + strandat 5794.306 kb on + strandat 5794.306 kb on + strandat 5795.168 kb on + strand, within Psyr_4885at 5795.683 kb on + strandat 5795.709 kb on - strandat 5795.858 kb on + strandat 5795.943 kb on + strandat 5795.943 kb on + strandat 5795.943 kb on + strandat 5795.943 kb on + strandat 5795.943 kb on + strandat 5795.943 kb on + strandat 5795.944 kb on - strandat 5795.944 kb on - strandat 5795.944 kb on - strandat 5795.946 kb on + strandat 5795.946 kb on + strandat 5795.947 kb on - strandat 5796.080 kb on + strandat 5796.080 kb on + strandat 5796.080 kb on + strandat 5796.080 kb on + strandat 5796.080 kb on + strandat 5796.080 kb on + strandat 5796.081 kb on - strandat 5796.081 kb on - strandat 5796.081 kb on - strandat 5796.081 kb on - strandat 5796.228 kb on - strand, within Psyr_4886at 5796.228 kb on - strand, within Psyr_4886at 5796.355 kb on + strand, within Psyr_4886at 5796.355 kb on + strand, within Psyr_4886at 5796.356 kb on - strand, within Psyr_4886at 5796.356 kb on - strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.412 kb on + strand, within Psyr_4886at 5796.413 kb on - strand, within Psyr_4886at 5796.413 kb on - strand, within Psyr_4886at 5796.413 kb on - strand, within Psyr_4886at 5796.415 kb on + strand, within Psyr_4886at 5796.416 kb on - strand, within Psyr_4886at 5796.416 kb on - strand, within Psyr_4886at 5796.422 kb on - strand, within Psyr_4886at 5796.422 kb on - strand, within Psyr_4886at 5796.449 kb on + strand, within Psyr_4886at 5796.450 kb on - strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.616 kb on + strand, within Psyr_4886at 5796.617 kb on - strand, within Psyr_4886at 5796.617 kb on - strand, within Psyr_4886at 5796.617 kb on - strand, within Psyr_4886at 5796.825 kb on + strand, within Psyr_4886

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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5,793,252 + Psyr_4882 0.61 +2.5
5,793,252 + Psyr_4882 0.61 -2.8
5,793,369 + Psyr_4882 0.85 -1.4
5,793,369 + Psyr_4882 0.85 -0.6
5,793,369 + Psyr_4882 0.85 -2.1
5,793,369 + Psyr_4882 0.85 -2.1
5,793,369 + Psyr_4882 0.85 -1.8
5,793,369 + Psyr_4882 0.85 -1.4
5,793,369 + Psyr_4882 0.85 +0.2
5,793,370 - Psyr_4882 0.85 -2.8
5,793,370 - Psyr_4882 0.85 -1.3
5,793,370 - Psyr_4882 0.85 -2.1
5,793,370 - Psyr_4882 0.85 -1.6
5,793,370 - Psyr_4882 0.85 +0.2
5,793,370 - Psyr_4882 0.85 -0.8
5,793,373 + Psyr_4882 0.86 -1.8
5,793,373 + Psyr_4882 0.86 +0.2
5,793,373 + Psyr_4882 0.86 -1.4
5,793,373 + Psyr_4882 0.86 -0.8
5,793,374 - Psyr_4882 0.86 -1.2
5,793,462 - -1.4
5,793,584 + Psyr_4883 0.40 +0.5
5,793,585 - Psyr_4883 0.40 +0.5
5,793,585 - Psyr_4883 0.40 -0.8
5,793,585 - Psyr_4883 0.40 -1.0
5,793,585 - Psyr_4883 0.40 -0.2
5,793,687 + Psyr_4883 0.81 -3.6
5,793,687 + Psyr_4883 0.81 -2.1
5,793,687 + Psyr_4883 0.81 +0.7
5,793,687 + Psyr_4883 0.81 -1.4
5,793,688 - Psyr_4883 0.81 +0.4
5,793,688 - Psyr_4883 0.81 -0.6
5,793,688 - Psyr_4883 0.81 -0.7
5,793,688 - Psyr_4883 0.81 -0.3
5,793,688 - Psyr_4883 0.81 -0.3
5,793,688 - Psyr_4883 0.81 +0.2
5,793,688 - Psyr_4883 0.81 +0.5
5,793,688 - Psyr_4883 0.81 -1.1
5,793,688 - Psyr_4883 0.81 -0.1
5,793,688 - Psyr_4883 0.81 +0.7
5,793,694 + Psyr_4883 0.84 -1.8
5,793,694 + Psyr_4883 0.84 -3.3
5,793,704 - Psyr_4883 0.88 -0.2
5,793,715 + -0.8
5,793,715 + -1.2
5,793,864 - Psyr_4884 0.31 -0.3
5,793,885 + Psyr_4884 0.36 -0.4
5,793,885 + Psyr_4884 0.36 +1.8
5,793,885 + Psyr_4884 0.36 +0.2
5,793,885 + Psyr_4884 0.36 -0.3
5,793,886 - Psyr_4884 0.36 +0.2
5,793,886 - Psyr_4884 0.36 +0.5
5,793,886 - Psyr_4884 0.36 -0.7
5,793,886 - Psyr_4884 0.36 -1.4
5,793,886 - Psyr_4884 0.36 -1.8
5,793,914 + Psyr_4884 0.43 -0.0
5,793,914 + Psyr_4884 0.43 -0.8
5,793,914 + Psyr_4884 0.43 +1.7
5,793,915 - Psyr_4884 0.43 +0.3
5,793,915 - Psyr_4884 0.43 -0.8
5,793,963 + Psyr_4884 0.55 +2.5
5,793,964 - Psyr_4884 0.55 -1.0
5,794,113 + +1.4
5,794,113 + -0.1
5,794,114 - -1.7
5,794,154 + +0.4
5,794,155 - +1.3
5,794,155 - +0.2
5,794,184 + +2.8
5,794,186 + +0.2
5,794,186 + -0.1
5,794,186 + +1.9
5,794,186 + +1.5
5,794,186 + +0.6
5,794,186 + +2.8
5,794,186 + -1.1
5,794,187 - -2.1
5,794,187 - -0.8
5,794,187 - -2.8
5,794,187 - +0.8
5,794,187 - -3.0
5,794,187 - -2.8
5,794,187 - -0.8
5,794,187 - +1.2
5,794,187 - -2.2
5,794,187 - -2.3
5,794,187 - -1.1
5,794,247 - -4.2
5,794,247 - -3.0
5,794,264 + -1.0
5,794,264 + +0.0
5,794,264 + +0.1
5,794,264 + -0.3
5,794,265 - -2.1
5,794,306 + -0.7
5,794,306 + -3.1
5,794,306 + -2.1
5,794,306 + -3.0
5,794,306 + -2.4
5,795,168 + Psyr_4885 0.58 -1.8
5,795,683 + -2.4
5,795,709 - +0.2
5,795,858 + -0.6
5,795,943 + +0.4
5,795,943 + -0.4
5,795,943 + +3.5
5,795,943 + -0.4
5,795,943 + +1.9
5,795,943 + -1.8
5,795,944 - +0.4
5,795,944 - +1.0
5,795,944 - +0.8
5,795,946 + -0.8
5,795,946 + +0.3
5,795,947 - +1.1
5,796,080 + -0.6
5,796,080 + +0.4
5,796,080 + +1.2
5,796,080 + +0.9
5,796,080 + +0.8
5,796,080 + -0.7
5,796,081 - -0.3
5,796,081 - +0.5
5,796,081 - -0.4
5,796,081 - -1.4
5,796,228 - Psyr_4886 0.18 +1.5
5,796,228 - Psyr_4886 0.18 -1.0
5,796,355 + Psyr_4886 0.27 -0.7
5,796,355 + Psyr_4886 0.27 +0.7
5,796,356 - Psyr_4886 0.27 +3.1
5,796,356 - Psyr_4886 0.27 -0.4
5,796,412 + Psyr_4886 0.32 -1.2
5,796,412 + Psyr_4886 0.32 -0.9
5,796,412 + Psyr_4886 0.32 +0.2
5,796,412 + Psyr_4886 0.32 +0.2
5,796,412 + Psyr_4886 0.32 +2.5
5,796,412 + Psyr_4886 0.32 +1.3
5,796,412 + Psyr_4886 0.32 +2.3
5,796,413 - Psyr_4886 0.32 +0.4
5,796,413 - Psyr_4886 0.32 -1.0
5,796,413 - Psyr_4886 0.32 +0.4
5,796,415 + Psyr_4886 0.32 +0.1
5,796,416 - Psyr_4886 0.32 +0.6
5,796,416 - Psyr_4886 0.32 -0.2
5,796,422 - Psyr_4886 0.32 -0.7
5,796,422 - Psyr_4886 0.32 -1.3
5,796,449 + Psyr_4886 0.34 +0.9
5,796,450 - Psyr_4886 0.35 -1.6
5,796,616 + Psyr_4886 0.47 +2.1
5,796,616 + Psyr_4886 0.47 -0.8
5,796,616 + Psyr_4886 0.47 -1.4
5,796,616 + Psyr_4886 0.47 -1.0
5,796,616 + Psyr_4886 0.47 -0.4
5,796,616 + Psyr_4886 0.47 +1.1
5,796,616 + Psyr_4886 0.47 +0.6
5,796,617 - Psyr_4886 0.47 +0.5
5,796,617 - Psyr_4886 0.47 -1.1
5,796,617 - Psyr_4886 0.47 -0.4
5,796,825 + Psyr_4886 0.63 +0.4

Or see this region's nucleotide sequence