Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3959

Experiment: Glycerol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycerol (C)
4,706,130	+		Psyr_3958	0.19	+1.2
4,706,130	+		Psyr_3958	0.19	+0.9
4,706,130	+		Psyr_3958	0.19	-0.7
4,706,131	-		Psyr_3958	0.19	+1.5
4,706,131	-		Psyr_3958	0.19	-2.4
4,706,154	-		Psyr_3958	0.23	-1.4
4,706,167	+		Psyr_3958	0.26	+0.3
4,706,167	+		Psyr_3958	0.26	+1.2
4,706,167	+		Psyr_3958	0.26	+2.9
4,706,171	+		Psyr_3958	0.26	+0.7
4,706,171	+		Psyr_3958	0.26	+0.5
4,706,172	-		Psyr_3958	0.26	+0.4
4,706,172	-		Psyr_3958	0.26	-1.7
4,706,172	-		Psyr_3958	0.26	+1.3
4,706,280	+		Psyr_3958	0.45	+0.9
4,706,280	+		Psyr_3958	0.45	-0.4
4,706,280	+		Psyr_3958	0.45	+2.5
4,706,281	-		Psyr_3958	0.45	+1.2
4,706,281	-		Psyr_3958	0.45	-0.5
4,706,303	+		Psyr_3958	0.49	+0.7
4,706,303	+		Psyr_3958	0.49	-2.1
4,706,303	+		Psyr_3958	0.49	+0.7
4,706,303	+		Psyr_3958	0.49	-0.9
4,706,303	+		Psyr_3958	0.49	-1.1
4,706,303	+		Psyr_3958	0.49	-0.1
4,706,303	+		Psyr_3958	0.49	+1.2
4,706,303	+		Psyr_3958	0.49	-1.7
4,706,303	+		Psyr_3958	0.49	-0.1
4,706,304	-		Psyr_3958	0.49	+0.2
4,706,304	-		Psyr_3958	0.49	+0.1
4,706,304	-		Psyr_3958	0.49	-2.9
4,706,304	-		Psyr_3958	0.49	-0.1
4,706,304	-		Psyr_3958	0.49	-0.4
4,706,304	-		Psyr_3958	0.49	-0.9
4,706,304	-		Psyr_3958	0.49	+1.8
4,706,304	-		Psyr_3958	0.49	+1.5
4,706,304	-		Psyr_3958	0.49	+1.8
4,706,343	+		Psyr_3958	0.56	+1.6
4,706,343	+		Psyr_3958	0.56	+2.3
4,706,343	+		Psyr_3958	0.56	+1.1
4,706,343	+		Psyr_3958	0.56	+1.5
4,706,344	-		Psyr_3958	0.56	+1.1
4,706,360	-		Psyr_3958	0.59	-0.1
4,706,373	+		Psyr_3958	0.61	+0.9
4,706,385	+		Psyr_3958	0.63	-0.5
4,706,386	-		Psyr_3958	0.63	+0.4
4,706,425	-		Psyr_3958	0.70	+0.3
4,706,435	-		Psyr_3958	0.72	-0.7
4,706,499	-		Psyr_3958	0.83	-0.5
4,706,514	+		Psyr_3958	0.85	-1.1
4,706,514	+		Psyr_3958	0.85	-0.5
4,706,514	+		Psyr_3958	0.85	-0.1
4,706,515	-		Psyr_3958	0.85	-0.6
4,706,515	-		Psyr_3958	0.85	-2.9
4,706,515	-		Psyr_3958	0.85	-0.9
4,706,558	+				+2.1
4,706,558	+				+1.9
4,706,559	-				-0.9
4,706,594	+				-0.3
4,706,640	-				-0.9
4,706,640	-				-0.8
4,706,660	+				+0.7
4,706,661	-				-1.1
4,706,661	-				-0.5
4,706,661	-				+0.5
4,706,719	+				+2.5
4,706,720	-				-1.3
4,706,765	+				-1.1
4,706,765	+				-0.1
4,706,800	+				+0.4
4,706,800	+				+0.6
4,706,800	+				+2.9
4,706,800	+				+0.1
4,706,800	+				+0.2
4,706,800	+				+2.3
4,706,800	+				-0.9
4,706,800	+				-1.3
4,706,800	+				+0.7
4,706,800	+				-1.9
4,706,801	-				-0.7
4,706,801	-				-0.1
4,706,801	-				-2.8
4,706,804	+				+1.8
4,706,805	-				+0.6
4,706,834	+				+3.0
4,706,864	-				-0.7
4,706,911	+				+0.7
4,707,031	+				+0.9
4,707,031	+				+0.4
4,707,031	+				+0.3
4,707,032	-				-0.1
4,707,032	-				+0.7
4,707,042	-				+0.6
4,707,060	+				+1.7
4,707,060	+				+0.1
4,707,061	-				-0.1
4,707,061	-				-1.4
4,707,061	-				-1.7
4,707,061	-				-2.5
4,707,064	+				+1.0
4,707,064	+				+1.5
4,707,064	+				+2.3
4,707,064	+				+1.5
4,707,064	+				+0.5
4,707,064	+				+2.8
4,707,064	+				+1.2
4,707,064	+				+4.0
4,707,064	+				+0.6
4,707,064	+				+0.5
4,707,064	+				+1.3
4,707,064	+				+0.4
4,707,064	+				+1.5
4,707,064	+				+0.4
4,707,064	+				-0.4
4,707,064	+				+1.2
4,707,064	+				+0.7
4,707,064	+				-2.6
4,707,064	+				+0.8
4,707,064	+				-0.6
4,707,064	+				-0.1
4,707,064	+				+1.0
4,707,065	-				-1.5
4,707,065	-				-0.1
4,707,065	-				+2.5
4,707,065	-				-1.1
4,707,065	-				-0.4
4,707,065	-				+0.9
4,707,065	-				-0.5
4,707,065	-				+0.9
4,707,065	-				+0.5
4,707,065	-				-1.1
4,707,065	-				-1.7
4,707,065	-				-0.0
4,707,065	-				-0.1
4,707,066	+				+1.1
4,707,066	+				+2.2
4,707,066	+				+0.0
4,707,066	+				+1.3
4,707,066	+				-0.5
4,707,066	+				-0.8
4,707,066	+				-0.2
4,707,067	-				+0.9
4,707,067	-				-1.2
4,707,067	-				+1.5
4,707,067	-				+1.2
4,707,067	-				-0.5
4,707,067	-				-0.7
4,707,067	-				+0.5
4,707,069	+				+0.9
4,707,069	+				+1.7
4,707,069	+				+1.6
4,707,070	-				-0.9
4,707,070	-				-1.7
4,707,122	+				-2.8
4,707,122	+				-0.7
4,707,122	+				-2.2
4,707,122	+				-3.1
4,707,122	+				-0.7
4,707,123	-				-0.1
4,707,123	-				-1.0
4,707,129	-				-0.3
4,707,471	+		Psyr_3959	0.23	+1.2
4,707,643	+		Psyr_3959	0.34	+0.5
4,707,643	+		Psyr_3959	0.34	+0.7
4,707,643	+		Psyr_3959	0.34	+0.3
4,707,643	+		Psyr_3959	0.34	+1.2
4,707,643	+		Psyr_3959	0.34	+0.5
4,707,643	+		Psyr_3959	0.34	-1.5
4,707,644	-		Psyr_3959	0.34	-4.1
4,707,644	-		Psyr_3959	0.34	-0.4
4,707,644	-		Psyr_3959	0.34	-1.0
4,707,644	-		Psyr_3959	0.34	-1.7
4,707,644	-		Psyr_3959	0.34	-1.1
4,707,644	-		Psyr_3959	0.34	-1.5
4,707,644	-		Psyr_3959	0.34	+0.1
4,707,644	-		Psyr_3959	0.34	+1.5
4,707,644	-		Psyr_3959	0.34	-1.8
4,707,644	-		Psyr_3959	0.34	-1.5
4,707,644	-		Psyr_3959	0.34	-0.5
4,707,644	-		Psyr_3959	0.34	-1.5
4,707,644	-		Psyr_3959	0.34	-2.1
4,707,644	-		Psyr_3959	0.34	-1.0
4,707,675	+		Psyr_3959	0.36	-0.7
4,707,676	-		Psyr_3959	0.36	-0.5
4,707,676	-		Psyr_3959	0.36	-0.1
4,707,679	+		Psyr_3959	0.36	+1.9
4,707,679	+		Psyr_3959	0.36	+1.2
4,707,679	+		Psyr_3959	0.36	-2.2
4,707,679	+		Psyr_3959	0.36	-0.6
4,707,679	+		Psyr_3959	0.36	-1.1
4,707,679	+		Psyr_3959	0.36	+0.0
4,707,679	+		Psyr_3959	0.36	-1.5
4,707,680	-		Psyr_3959	0.36	-0.7
4,707,680	-		Psyr_3959	0.36	+0.3
4,707,680	-		Psyr_3959	0.36	+0.5
4,707,680	-		Psyr_3959	0.36	-1.3
4,707,680	-		Psyr_3959	0.36	-1.5
4,707,680	-		Psyr_3959	0.36	-1.1
4,707,680	-		Psyr_3959	0.36	-0.5
4,707,727	+		Psyr_3959	0.39	-1.0
4,707,728	-		Psyr_3959	0.39	+0.5
4,707,728	-		Psyr_3959	0.39	-2.5
4,707,728	-		Psyr_3959	0.39	+1.5
4,707,733	+		Psyr_3959	0.39	-1.1
4,707,841	+		Psyr_3959	0.46	-0.9
4,707,841	+		Psyr_3959	0.46	-2.7
4,707,841	+		Psyr_3959	0.46	-0.3
4,707,842	-		Psyr_3959	0.46	-1.7
4,708,025	-		Psyr_3959	0.57	-2.0
4,708,081	+		Psyr_3959	0.61	-0.1
4,708,082	-		Psyr_3959	0.61	-1.1
4,708,082	-		Psyr_3959	0.61	-1.2
4,708,082	-		Psyr_3959	0.61	-0.9
4,708,150	+		Psyr_3959	0.65	-2.0
4,708,150	+		Psyr_3959	0.65	-3.5
4,708,151	-		Psyr_3959	0.65	-2.9
4,708,151	-		Psyr_3959	0.65	-1.5
4,708,151	-		Psyr_3959	0.65	-2.5
4,708,151	-		Psyr_3959	0.65	-1.7
4,708,151	-		Psyr_3959	0.65	-0.5
4,708,207	+		Psyr_3959	0.69	-1.1
4,708,207	+		Psyr_3959	0.69	-2.7
4,708,207	+		Psyr_3959	0.69	-0.8
4,708,208	-		Psyr_3959	0.69	-0.7
4,708,444	+		Psyr_3959	0.83	-1.1
4,708,444	+		Psyr_3959	0.83	+0.1
4,708,444	+		Psyr_3959	0.83	+0.5
4,708,445	-		Psyr_3959	0.83	-0.7
4,708,445	-		Psyr_3959	0.83	-0.1
4,708,528	+		Psyr_3959	0.88	-0.9
4,708,537	+		Psyr_3959	0.89	-0.9
4,708,537	+		Psyr_3959	0.89	-0.6
4,708,537	+		Psyr_3959	0.89	-0.9
4,708,537	+		Psyr_3959	0.89	-0.8
4,708,537	+		Psyr_3959	0.89	-0.9
4,708,537	+		Psyr_3959	0.89	-1.7
4,708,537	+		Psyr_3959	0.89	-2.1
4,708,537	+		Psyr_3959	0.89	-2.7
4,708,537	+		Psyr_3959	0.89	-0.1
4,708,538	-		Psyr_3959	0.89	-1.1
4,708,538	-		Psyr_3959	0.89	-0.5
4,708,538	-		Psyr_3959	0.89	-1.0
4,708,538	-		Psyr_3959	0.89	-3.8
4,708,538	-		Psyr_3959	0.89	-1.9
4,708,639	+				-1.6
4,708,651	+				-1.1
4,708,659	+				-1.1
4,708,683	+				-0.5
4,708,684	-				-1.1
4,708,684	-				-1.7
4,708,684	-				-0.5
4,708,702	+				+0.3
4,708,702	+				+2.7
4,708,702	+				+1.6
4,708,702	+				-0.8
4,708,702	+				-0.4
4,708,702	+				+0.6
4,708,702	+				-0.6
4,708,702	+				+0.6
4,708,702	+				+0.1
4,708,702	+				+0.1
4,708,702	+				+0.8
4,708,702	+				+1.9
4,708,703	-				+2.3
4,708,703	-				+0.1
4,708,703	-				+0.0
4,708,703	-				+1.0
4,708,703	-				-0.4
4,708,703	-				+1.0
4,708,703	-				+1.5
4,708,703	-				-0.1
4,708,703	-				+0.5
4,708,703	-				-0.3
4,708,771	+		Psyr_3960	0.19	+1.2
4,708,771	+		Psyr_3960	0.19	+0.5
4,708,865	+		Psyr_3960	0.39	-0.6
4,708,866	-		Psyr_3960	0.40	+0.4
4,708,892	+		Psyr_3960	0.45	+1.3
4,708,892	+		Psyr_3960	0.45	+0.7
4,708,892	+		Psyr_3960	0.45	+1.9
4,708,892	+		Psyr_3960	0.45	-0.5
4,708,893	-		Psyr_3960	0.45	-0.9
4,708,893	-		Psyr_3960	0.45	-0.8
4,708,893	-		Psyr_3960	0.45	+0.1
4,708,893	-		Psyr_3960	0.45	+0.6
4,708,893	-		Psyr_3960	0.45	+0.5
4,708,893	-		Psyr_3960	0.45	-1.5
4,708,893	-		Psyr_3960	0.45	-1.0
4,708,974	-		Psyr_3960	0.63	-0.1
4,709,001	-		Psyr_3960	0.69	+0.3
4,709,001	-		Psyr_3960	0.69	+0.4
4,709,046	+		Psyr_3960	0.78	+0.7
4,709,047	-		Psyr_3960	0.78	-0.1
4,709,082	+		Psyr_3960	0.86	+2.2
4,709,082	+		Psyr_3960	0.86	-0.5
4,709,082	+		Psyr_3960	0.86	-0.8
4,709,083	-		Psyr_3960	0.86	-0.0
4,709,083	-		Psyr_3960	0.86	-0.6
4,709,083	-		Psyr_3960	0.86	-0.1
4,709,083	-		Psyr_3960	0.86	+0.2
4,709,083	-		Psyr_3960	0.86	+0.1
4,709,402	-				+2.2
4,709,402	-				+1.7
4,709,402	-				+0.7
4,709,412	+				-1.1
4,709,412	+				+2.0
4,709,413	-				+1.5
4,709,413	-				+0.1
4,709,413	-				+0.5
4,709,413	-				+0.5
4,709,413	-				+0.5
4,709,413	-				+0.6
4,709,413	-				-0.9
4,709,414	+				+0.8
4,709,414	+				-1.6
4,709,414	+				+1.6
4,709,415	-				-1.0
4,709,415	-				+0.5
4,709,415	-				+0.9
4,709,415	-				+0.6
4,709,467	+				-1.7
4,709,468	-				-0.9
4,709,468	-				-0.1
4,709,479	+				+0.2
4,709,496	+				+0.2
4,709,496	+				+0.6
4,709,496	+				-0.1