Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2264 and Psyr_2265 are separated by 16 nucleotides Psyr_2265 and Psyr_2266 are separated by 8 nucleotides Psyr_2266 and Psyr_2267 are separated by 102 nucleotides
Psyr_2264: Psyr_2264 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,629,325 to 2,630,326
_2264
Psyr_2265: Psyr_2265 - Binding-protein-dependent transport systems inner membrane component, at 2,630,343 to 2,631,251
_2265
Psyr_2266: Psyr_2266 - Binding-protein-dependent transport systems inner membrane component, at 2,631,260 to 2,632,177
_2266
Psyr_2267: Psyr_2267 - extracellular solute-binding protein, family 5, at 2,632,280 to 2,633,800
_2267
Position (kb)
2631
2632
2633 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2630.315 kb on + strand at 2630.315 kb on + strand at 2630.316 kb on - strand at 2630.316 kb on - strand at 2630.316 kb on - strand at 2630.332 kb on + strand at 2630.464 kb on + strand, within Psyr_2265 at 2630.464 kb on + strand, within Psyr_2265 at 2630.465 kb on - strand, within Psyr_2265 at 2630.465 kb on - strand, within Psyr_2265 at 2630.465 kb on - strand, within Psyr_2265 at 2630.872 kb on + strand, within Psyr_2265 at 2630.977 kb on + strand, within Psyr_2265 at 2631.011 kb on - strand, within Psyr_2265 at 2631.262 kb on - strand at 2631.262 kb on - strand at 2631.327 kb on + strand at 2631.327 kb on + strand at 2631.327 kb on + strand at 2631.327 kb on + strand at 2631.327 kb on + strand at 2631.327 kb on + strand at 2631.327 kb on + strand at 2631.328 kb on - strand at 2631.328 kb on - strand at 2631.328 kb on - strand at 2631.570 kb on + strand, within Psyr_2266 at 2631.570 kb on + strand, within Psyr_2266 at 2631.633 kb on + strand, within Psyr_2266 at 2631.637 kb on - strand, within Psyr_2266 at 2631.771 kb on - strand, within Psyr_2266 at 2631.919 kb on - strand, within Psyr_2266 at 2632.281 kb on + strand at 2632.281 kb on + strand at 2632.281 kb on + strand at 2632.281 kb on + strand at 2632.282 kb on - strand at 2632.298 kb on + strand at 2632.350 kb on + strand at 2632.350 kb on + strand at 2632.350 kb on + strand at 2632.350 kb on + strand at 2632.350 kb on + strand at 2632.356 kb on + strand at 2632.357 kb on - strand at 2632.357 kb on - strand at 2632.629 kb on + strand, within Psyr_2267 at 2632.638 kb on + strand, within Psyr_2267 at 2632.696 kb on - strand, within Psyr_2267 at 2632.696 kb on - strand, within Psyr_2267 at 2632.786 kb on - strand, within Psyr_2267 at 2632.922 kb on + strand, within Psyr_2267 at 2632.923 kb on - strand, within Psyr_2267 at 2632.923 kb on - strand, within Psyr_2267 at 2632.923 kb on - strand, within Psyr_2267 at 2632.923 kb on - strand, within Psyr_2267
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 2,630,315 + -0.1 2,630,315 + +2.2 2,630,316 - +0.7 2,630,316 - -0.3 2,630,316 - +1.3 2,630,332 + +0.8 2,630,464 + Psyr_2265 0.13 -3.1 2,630,464 + Psyr_2265 0.13 -0.6 2,630,465 - Psyr_2265 0.13 -1.2 2,630,465 - Psyr_2265 0.13 +0.4 2,630,465 - Psyr_2265 0.13 -0.6 2,630,872 + Psyr_2265 0.58 +0.7 2,630,977 + Psyr_2265 0.70 -0.8 2,631,011 - Psyr_2265 0.73 -1.4 2,631,262 - -2.1 2,631,262 - +0.9 2,631,327 + -2.1 2,631,327 + -1.6 2,631,327 + +1.3 2,631,327 + +1.4 2,631,327 + -1.9 2,631,327 + +1.4 2,631,327 + +1.0 2,631,328 - -2.6 2,631,328 - +1.7 2,631,328 - +2.1 2,631,570 + Psyr_2266 0.34 -0.6 2,631,570 + Psyr_2266 0.34 +1.9 2,631,633 + Psyr_2266 0.41 +1.2 2,631,637 - Psyr_2266 0.41 +0.7 2,631,771 - Psyr_2266 0.56 +1.0 2,631,919 - Psyr_2266 0.72 +1.5 2,632,281 + -0.6 2,632,281 + +0.4 2,632,281 + +0.6 2,632,281 + -1.6 2,632,282 - +1.1 2,632,298 + -0.2 2,632,350 + -0.5 2,632,350 + +0.3 2,632,350 + +0.1 2,632,350 + +1.5 2,632,350 + +0.7 2,632,356 + +0.4 2,632,357 - +0.5 2,632,357 - +0.2 2,632,629 + Psyr_2267 0.23 -0.4 2,632,638 + Psyr_2267 0.24 +1.7 2,632,696 - Psyr_2267 0.27 -1.2 2,632,696 - Psyr_2267 0.27 -1.4 2,632,786 - Psyr_2267 0.33 +0.7 2,632,922 + Psyr_2267 0.42 -0.6 2,632,923 - Psyr_2267 0.42 -0.5 2,632,923 - Psyr_2267 0.42 +1.4 2,632,923 - Psyr_2267 0.42 +0.3 2,632,923 - Psyr_2267 0.42 +0.7
Or see this region's nucleotide sequence