Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2266

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_2264 and Psyr_2265 are separated by 16 nucleotidesPsyr_2265 and Psyr_2266 are separated by 8 nucleotidesPsyr_2266 and Psyr_2267 are separated by 102 nucleotides Psyr_2264: Psyr_2264 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 2,629,325 to 2,630,326 _2264 Psyr_2265: Psyr_2265 - Binding-protein-dependent transport systems inner membrane component, at 2,630,343 to 2,631,251 _2265 Psyr_2266: Psyr_2266 - Binding-protein-dependent transport systems inner membrane component, at 2,631,260 to 2,632,177 _2266 Psyr_2267: Psyr_2267 - extracellular solute-binding protein, family 5, at 2,632,280 to 2,633,800 _2267 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2630.315 kb on + strandat 2630.315 kb on + strandat 2630.316 kb on - strandat 2630.316 kb on - strandat 2630.316 kb on - strandat 2630.332 kb on + strandat 2630.464 kb on + strand, within Psyr_2265at 2630.464 kb on + strand, within Psyr_2265at 2630.465 kb on - strand, within Psyr_2265at 2630.465 kb on - strand, within Psyr_2265at 2630.465 kb on - strand, within Psyr_2265at 2630.872 kb on + strand, within Psyr_2265at 2630.977 kb on + strand, within Psyr_2265at 2631.011 kb on - strand, within Psyr_2265at 2631.262 kb on - strandat 2631.262 kb on - strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.327 kb on + strandat 2631.328 kb on - strandat 2631.328 kb on - strandat 2631.328 kb on - strandat 2631.570 kb on + strand, within Psyr_2266at 2631.570 kb on + strand, within Psyr_2266at 2631.633 kb on + strand, within Psyr_2266at 2631.637 kb on - strand, within Psyr_2266at 2631.771 kb on - strand, within Psyr_2266at 2631.919 kb on - strand, within Psyr_2266at 2632.281 kb on + strandat 2632.281 kb on + strandat 2632.281 kb on + strandat 2632.281 kb on + strandat 2632.282 kb on - strandat 2632.298 kb on + strandat 2632.350 kb on + strandat 2632.350 kb on + strandat 2632.350 kb on + strandat 2632.350 kb on + strandat 2632.350 kb on + strandat 2632.356 kb on + strandat 2632.357 kb on - strandat 2632.357 kb on - strandat 2632.629 kb on + strand, within Psyr_2267at 2632.638 kb on + strand, within Psyr_2267at 2632.696 kb on - strand, within Psyr_2267at 2632.696 kb on - strand, within Psyr_2267at 2632.786 kb on - strand, within Psyr_2267at 2632.922 kb on + strand, within Psyr_2267at 2632.923 kb on - strand, within Psyr_2267at 2632.923 kb on - strand, within Psyr_2267at 2632.923 kb on - strand, within Psyr_2267at 2632.923 kb on - strand, within Psyr_2267

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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2,630,315 + -0.1
2,630,315 + +2.2
2,630,316 - +0.7
2,630,316 - -0.3
2,630,316 - +1.3
2,630,332 + +0.8
2,630,464 + Psyr_2265 0.13 -3.1
2,630,464 + Psyr_2265 0.13 -0.6
2,630,465 - Psyr_2265 0.13 -1.2
2,630,465 - Psyr_2265 0.13 +0.4
2,630,465 - Psyr_2265 0.13 -0.6
2,630,872 + Psyr_2265 0.58 +0.7
2,630,977 + Psyr_2265 0.70 -0.8
2,631,011 - Psyr_2265 0.73 -1.4
2,631,262 - -2.1
2,631,262 - +0.9
2,631,327 + -2.1
2,631,327 + -1.6
2,631,327 + +1.3
2,631,327 + +1.4
2,631,327 + -1.9
2,631,327 + +1.4
2,631,327 + +1.0
2,631,328 - -2.6
2,631,328 - +1.7
2,631,328 - +2.1
2,631,570 + Psyr_2266 0.34 -0.6
2,631,570 + Psyr_2266 0.34 +1.9
2,631,633 + Psyr_2266 0.41 +1.2
2,631,637 - Psyr_2266 0.41 +0.7
2,631,771 - Psyr_2266 0.56 +1.0
2,631,919 - Psyr_2266 0.72 +1.5
2,632,281 + -0.6
2,632,281 + +0.4
2,632,281 + +0.6
2,632,281 + -1.6
2,632,282 - +1.1
2,632,298 + -0.2
2,632,350 + -0.5
2,632,350 + +0.3
2,632,350 + +0.1
2,632,350 + +1.5
2,632,350 + +0.7
2,632,356 + +0.4
2,632,357 - +0.5
2,632,357 - +0.2
2,632,629 + Psyr_2267 0.23 -0.4
2,632,638 + Psyr_2267 0.24 +1.7
2,632,696 - Psyr_2267 0.27 -1.2
2,632,696 - Psyr_2267 0.27 -1.4
2,632,786 - Psyr_2267 0.33 +0.7
2,632,922 + Psyr_2267 0.42 -0.6
2,632,923 - Psyr_2267 0.42 -0.5
2,632,923 - Psyr_2267 0.42 +1.4
2,632,923 - Psyr_2267 0.42 +0.3
2,632,923 - Psyr_2267 0.42 +0.7

Or see this region's nucleotide sequence