Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1421

Experiment: Glycerol (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Glycerol (C)
1,606,965	-		Psyr_1420	0.67	-0.5
1,606,967	-		Psyr_1420	0.67	+1.4
1,607,051	+		Psyr_1420	0.70	-0.5
1,607,051	+		Psyr_1420	0.70	+0.0
1,607,051	+		Psyr_1420	0.70	+2.5
1,607,051	+		Psyr_1420	0.70	+0.2
1,607,052	-		Psyr_1420	0.70	-1.0
1,607,052	-		Psyr_1420	0.70	-1.5
1,607,052	-		Psyr_1420	0.70	+0.0
1,607,052	-		Psyr_1420	0.70	-1.5
1,607,052	-		Psyr_1420	0.70	+0.1
1,607,080	+		Psyr_1420	0.71	-0.7
1,607,091	-		Psyr_1420	0.72	-0.2
1,607,176	-		Psyr_1420	0.75	-0.9
1,607,223	+		Psyr_1420	0.77	-0.3
1,607,223	+		Psyr_1420	0.77	-1.4
1,607,223	+		Psyr_1420	0.77	+2.2
1,607,223	+		Psyr_1420	0.77	+0.1
1,607,224	-		Psyr_1420	0.77	-0.2
1,607,224	-		Psyr_1420	0.77	-1.5
1,607,224	-		Psyr_1420	0.77	-0.0
1,607,225	+		Psyr_1420	0.77	-0.9
1,607,225	+		Psyr_1420	0.77	+2.3
1,607,225	+		Psyr_1420	0.77	+0.2
1,607,226	-		Psyr_1420	0.77	-0.4
1,607,226	-		Psyr_1420	0.77	-0.3
1,607,255	+		Psyr_1420	0.78	-2.5
1,607,255	+		Psyr_1420	0.78	-0.6
1,607,255	+		Psyr_1420	0.78	+0.7
1,607,255	+		Psyr_1420	0.78	-0.2
1,607,256	-		Psyr_1420	0.78	+0.4
1,607,256	-		Psyr_1420	0.78	+2.4
1,607,256	-		Psyr_1420	0.78	-3.4
1,607,277	+		Psyr_1420	0.79	+0.9
1,607,277	+		Psyr_1420	0.79	+1.5
1,607,277	+		Psyr_1420	0.79	+0.4
1,607,277	+		Psyr_1420	0.79	-0.1
1,607,277	+		Psyr_1420	0.79	-0.2
1,607,277	+		Psyr_1420	0.79	+1.8
1,607,277	+		Psyr_1420	0.79	-2.0
1,607,277	+		Psyr_1420	0.79	+1.8
1,607,277	+		Psyr_1420	0.79	+0.2
1,607,277	+		Psyr_1420	0.79	-1.0
1,607,277	+		Psyr_1420	0.79	+0.6
1,607,277	+		Psyr_1420	0.79	-3.8
1,607,277	+		Psyr_1420	0.79	+0.5
1,607,277	+		Psyr_1420	0.79	+1.2
1,607,277	+		Psyr_1420	0.79	-0.2
1,607,278	-		Psyr_1420	0.79	+1.4
1,607,278	-		Psyr_1420	0.79	-0.1
1,607,278	-		Psyr_1420	0.79	-0.1
1,607,278	-		Psyr_1420	0.79	-0.0
1,607,278	-		Psyr_1420	0.79	-0.6
1,607,278	-		Psyr_1420	0.79	-0.2
1,607,278	-		Psyr_1420	0.79	-0.2
1,607,278	-		Psyr_1420	0.79	+0.5
1,607,278	-		Psyr_1420	0.79	+2.8
1,607,278	-		Psyr_1420	0.79	-0.7
1,607,278	-		Psyr_1420	0.79	+1.5
1,607,278	-		Psyr_1420	0.79	-1.2
1,607,278	-		Psyr_1420	0.79	+1.8
1,607,278	-		Psyr_1420	0.79	-1.8
1,607,278	-		Psyr_1420	0.79	+0.7
1,607,278	-		Psyr_1420	0.79	-1.2
1,607,278	-		Psyr_1420	0.79	-1.1
1,607,353	+		Psyr_1420	0.81	-1.2
1,607,419	+		Psyr_1420	0.84	-0.8
1,607,419	+		Psyr_1420	0.84	+0.8
1,607,420	-		Psyr_1420	0.84	-0.0
1,607,420	-		Psyr_1420	0.84	-1.2
1,607,420	-		Psyr_1420	0.84	-0.7
1,607,420	-		Psyr_1420	0.84	-0.7
1,607,420	-		Psyr_1420	0.84	+0.8
1,607,420	-		Psyr_1420	0.84	+2.2
1,607,511	+		Psyr_1420	0.88	-0.5
1,607,512	-		Psyr_1420	0.88	-1.5
1,607,589	+				+0.0
1,607,595	+				-1.4
1,607,595	+				+1.0
1,607,595	+				-1.3
1,607,595	+				-0.1
1,607,596	-				+0.8
1,607,596	-				-0.5
1,607,596	-				+0.4
1,607,596	-				-0.2
1,607,596	-				+0.2
1,607,596	-				-1.1
1,607,596	-				+0.2
1,607,596	-				+0.5
1,607,596	-				+0.8
1,607,596	-				+0.5
1,607,596	-				+0.1
1,607,601	+				+0.8
1,607,602	-				-0.2
1,607,602	-				+0.5
1,607,602	-				-1.1
1,607,664	-				+0.4
1,607,684	+				+1.6
1,607,684	+				-0.8
1,607,684	+				-1.0
1,607,685	-				+1.5
1,607,685	-				+0.9
1,607,685	-				+0.3
1,607,685	-				+0.1
1,607,826	-				+1.5
1,607,901	-				+0.4
1,607,940	+				-1.0
1,607,941	-				-1.3
1,607,944	+				+0.2
1,607,944	+				+0.1
1,607,945	-				+0.2
1,607,945	-				-0.4
1,607,955	+				-0.2
1,607,955	+				-3.4
1,607,955	+				+1.1
1,607,955	+				-1.6
1,607,956	-				+0.4
1,607,956	-				-0.2
1,607,956	-				+0.1
1,607,959	+				-2.5
1,607,959	+				+0.7
1,607,959	+				+0.6
1,607,960	-				+1.6
1,607,960	-				-2.7
1,607,960	-				+0.9
1,607,960	-				+1.0
1,607,960	-				+0.1
1,607,960	-				-0.3
1,607,960	-				+3.2
1,608,016	-				-0.1
1,608,016	-				-0.1
1,608,146	+		Psyr_1421	0.13	-0.7
1,608,146	+		Psyr_1421	0.13	-0.2
1,608,146	+		Psyr_1421	0.13	-1.5
1,608,269	+		Psyr_1421	0.22	-0.1
1,608,269	+		Psyr_1421	0.22	-2.5
1,608,270	-		Psyr_1421	0.22	+0.4
1,608,270	-		Psyr_1421	0.22	+0.8
1,608,424	+		Psyr_1421	0.33	-0.2
1,608,424	+		Psyr_1421	0.33	-2.5
1,608,424	+		Psyr_1421	0.33	-0.7
1,608,424	+		Psyr_1421	0.33	-0.8
1,608,424	+		Psyr_1421	0.33	+1.0
1,608,762	-		Psyr_1421	0.57	+1.2
1,608,772	-		Psyr_1421	0.57	-0.2
1,608,916	+		Psyr_1421	0.68	-1.4
1,608,959	+		Psyr_1421	0.71	+0.5
1,609,017	-		Psyr_1421	0.75	+0.6
1,609,017	-		Psyr_1421	0.75	-0.8
1,609,133	-		Psyr_1421	0.83	+0.1
1,609,133	-		Psyr_1421	0.83	-1.8
1,609,138	+		Psyr_1421	0.83	-0.2
1,609,138	+		Psyr_1421	0.83	-0.7
1,609,138	+		Psyr_1421	0.83	-1.9
1,609,138	+		Psyr_1421	0.83	-0.2
1,609,138	+		Psyr_1421	0.83	-1.0
1,609,138	+		Psyr_1421	0.83	+0.3
1,609,139	-		Psyr_1421	0.84	-1.8
1,609,139	-		Psyr_1421	0.84	+1.5
1,609,139	-		Psyr_1421	0.84	-2.5
1,609,139	-		Psyr_1421	0.84	+1.2
1,609,139	-		Psyr_1421	0.84	+0.7
1,609,139	-		Psyr_1421	0.84	-0.7
1,609,139	-		Psyr_1421	0.84	-0.4
1,609,139	-		Psyr_1421	0.84	+0.5
1,609,163	-		Psyr_1421	0.85	+0.8
1,609,163	-		Psyr_1421	0.85	+0.5
1,609,616	+		Psyr_1422	0.13	-1.4
1,609,617	-		Psyr_1422	0.13	+0.5
1,609,617	-		Psyr_1422	0.13	-0.2
1,609,780	+		Psyr_1422	0.22	-0.9
1,609,874	-		Psyr_1422	0.27	-0.4
1,610,026	+		Psyr_1422	0.35	+0.3
1,610,026	+		Psyr_1422	0.35	-1.1
1,610,026	+		Psyr_1422	0.35	-0.6