Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0370

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0368 and Psyr_0369 are separated by 3 nucleotidesPsyr_0369 and Psyr_0370 are separated by 251 nucleotidesPsyr_0370 and Psyr_0371 are separated by 134 nucleotides Psyr_0368: Psyr_0368 - lipoprotein Blc, at 392,869 to 393,447 _0368 Psyr_0369: Psyr_0369 - lipoprotein, putative, at 393,451 to 393,705 _0369 Psyr_0370: Psyr_0370 - D-fructose 1,6-bisphosphatase, at 393,957 to 394,967 _0370 Psyr_0371: Psyr_0371 - conserved hypothetical protein, at 395,102 to 396,481 _0371 Position (kb) 393 394 395Strain fitness (log2 ratio) -2 -1 0 1 2at 392.991 kb on + strand, within Psyr_0368at 392.992 kb on - strand, within Psyr_0368at 392.992 kb on - strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.011 kb on + strand, within Psyr_0368at 393.012 kb on - strand, within Psyr_0368at 393.012 kb on - strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.249 kb on + strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.250 kb on - strand, within Psyr_0368at 393.327 kb on - strand, within Psyr_0368at 393.430 kb on + strandat 393.452 kb on + strandat 393.453 kb on - strandat 393.453 kb on - strandat 393.497 kb on + strand, within Psyr_0369at 393.498 kb on - strand, within Psyr_0369at 393.510 kb on + strand, within Psyr_0369at 393.510 kb on + strand, within Psyr_0369at 393.511 kb on - strand, within Psyr_0369at 393.629 kb on + strand, within Psyr_0369at 393.629 kb on + strand, within Psyr_0369at 393.682 kb on + strandat 393.683 kb on - strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.711 kb on + strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.712 kb on - strandat 393.785 kb on + strandat 393.785 kb on + strandat 393.786 kb on - strandat 393.786 kb on - strandat 393.786 kb on - strandat 393.829 kb on + strandat 393.845 kb on + strandat 393.845 kb on + strandat 393.959 kb on - strandat 395.027 kb on - strandat 395.027 kb on - strandat 395.027 kb on - strandat 395.027 kb on - strandat 395.027 kb on - strandat 395.027 kb on - strandat 395.029 kb on + strandat 395.030 kb on - strandat 395.049 kb on - strandat 395.049 kb on - strandat 395.201 kb on - strandat 395.201 kb on - strandat 395.468 kb on + strand, within Psyr_0371at 395.468 kb on + strand, within Psyr_0371at 395.468 kb on + strand, within Psyr_0371at 395.469 kb on - strand, within Psyr_0371at 395.469 kb on - strand, within Psyr_0371at 395.469 kb on - strand, within Psyr_0371at 395.688 kb on + strand, within Psyr_0371at 395.688 kb on + strand, within Psyr_0371at 395.688 kb on + strand, within Psyr_0371at 395.688 kb on + strand, within Psyr_0371at 395.688 kb on + strand, within Psyr_0371at 395.689 kb on - strand, within Psyr_0371at 395.830 kb on - strand, within Psyr_0371

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Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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392,991 + Psyr_0368 0.21 -1.0
392,992 - Psyr_0368 0.21 +0.3
392,992 - Psyr_0368 0.21 -1.4
393,011 + Psyr_0368 0.25 -0.1
393,011 + Psyr_0368 0.25 -0.1
393,011 + Psyr_0368 0.25 +0.3
393,011 + Psyr_0368 0.25 -2.0
393,012 - Psyr_0368 0.25 -0.4
393,012 - Psyr_0368 0.25 +0.5
393,249 + Psyr_0368 0.66 -1.2
393,249 + Psyr_0368 0.66 -0.6
393,249 + Psyr_0368 0.66 +0.7
393,249 + Psyr_0368 0.66 -2.6
393,249 + Psyr_0368 0.66 -1.4
393,249 + Psyr_0368 0.66 +0.8
393,249 + Psyr_0368 0.66 +0.4
393,249 + Psyr_0368 0.66 +2.0
393,249 + Psyr_0368 0.66 +0.2
393,249 + Psyr_0368 0.66 -1.4
393,249 + Psyr_0368 0.66 +0.8
393,250 - Psyr_0368 0.66 +0.1
393,250 - Psyr_0368 0.66 +1.6
393,250 - Psyr_0368 0.66 +0.3
393,250 - Psyr_0368 0.66 +0.2
393,250 - Psyr_0368 0.66 +1.2
393,250 - Psyr_0368 0.66 +0.9
393,250 - Psyr_0368 0.66 +1.2
393,250 - Psyr_0368 0.66 -1.1
393,250 - Psyr_0368 0.66 -0.2
393,250 - Psyr_0368 0.66 -0.8
393,250 - Psyr_0368 0.66 +0.7
393,327 - Psyr_0368 0.79 +0.2
393,430 + -0.9
393,452 + +1.8
393,453 - -0.4
393,453 - +0.5
393,497 + Psyr_0369 0.18 +0.2
393,498 - Psyr_0369 0.18 -0.8
393,510 + Psyr_0369 0.23 -0.2
393,510 + Psyr_0369 0.23 -0.2
393,511 - Psyr_0369 0.24 +0.0
393,629 + Psyr_0369 0.70 +0.4
393,629 + Psyr_0369 0.70 +0.5
393,682 + +2.3
393,683 - -1.2
393,711 + +0.6
393,711 + +0.8
393,711 + +0.9
393,711 + +0.3
393,711 + -0.1
393,711 + -0.8
393,711 + -0.2
393,711 + +1.9
393,711 + -2.5
393,711 + +0.3
393,711 + -0.8
393,711 + +0.3
393,711 + -1.8
393,711 + -1.1
393,711 + +1.2
393,711 + -0.0
393,711 + +0.9
393,712 - +0.2
393,712 - +1.0
393,712 - +1.3
393,712 - -1.8
393,712 - +0.2
393,712 - -0.2
393,712 - -0.1
393,712 - -0.3
393,712 - +0.0
393,712 - -0.2
393,712 - +0.2
393,712 - +0.9
393,785 + -1.6
393,785 + -0.6
393,786 - -1.4
393,786 - +0.2
393,786 - -0.1
393,829 + -0.8
393,845 + -0.8
393,845 + +0.4
393,959 - +0.9
395,027 - -1.3
395,027 - +0.5
395,027 - +0.2
395,027 - +1.5
395,027 - +1.2
395,027 - +0.6
395,029 + -1.8
395,030 - -1.8
395,049 - +0.2
395,049 - -0.6
395,201 - +1.5
395,201 - +1.2
395,468 + Psyr_0371 0.27 -0.8
395,468 + Psyr_0371 0.27 -0.6
395,468 + Psyr_0371 0.27 -0.5
395,469 - Psyr_0371 0.27 +0.2
395,469 - Psyr_0371 0.27 +1.3
395,469 - Psyr_0371 0.27 +0.3
395,688 + Psyr_0371 0.42 -0.2
395,688 + Psyr_0371 0.42 -0.8
395,688 + Psyr_0371 0.42 +0.0
395,688 + Psyr_0371 0.42 -0.0
395,688 + Psyr_0371 0.42 +1.3
395,689 - Psyr_0371 0.43 -1.5
395,830 - Psyr_0371 0.53 -1.7

Or see this region's nucleotide sequence