Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0193

Experiment: Glycerol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0191 and Psyr_0192 are separated by 227 nucleotidesPsyr_0192 and Psyr_0193 are separated by 15 nucleotidesPsyr_0193 and Psyr_0194 are separated by 235 nucleotidesPsyr_0194 and Psyr_0195 are separated by 15 nucleotides Psyr_0191: Psyr_0191 - Protein of unknown function DUF526, at 202,769 to 203,044 _0191 Psyr_0192: Psyr_0192 - conserved hypothetical protein, at 203,272 to 203,901 _0192 Psyr_0193: Psyr_0193 - transcriptional regulator, AraC family, at 203,917 to 204,834 _0193 Psyr_0194: Psyr_0194 - Short-chain dehydrogenase/reductase SDR, at 205,070 to 205,804 _0194 Psyr_0195: Psyr_0195 - conserved hypothetical protein, at 205,820 to 206,563 _0195 Position (kb) 203 204 205Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 203.043 kb on - strandat 203.145 kb on + strandat 203.191 kb on + strandat 203.191 kb on + strandat 203.192 kb on - strandat 203.192 kb on - strandat 203.209 kb on + strandat 203.210 kb on - strandat 203.271 kb on + strandat 203.271 kb on + strandat 203.271 kb on + strandat 203.271 kb on + strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.272 kb on - strandat 203.305 kb on - strandat 203.389 kb on + strand, within Psyr_0192at 203.389 kb on + strand, within Psyr_0192at 203.389 kb on + strand, within Psyr_0192at 203.389 kb on + strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.390 kb on - strand, within Psyr_0192at 203.437 kb on + strand, within Psyr_0192at 203.437 kb on + strand, within Psyr_0192at 203.437 kb on + strand, within Psyr_0192at 203.438 kb on - strand, within Psyr_0192at 203.438 kb on - strand, within Psyr_0192at 203.440 kb on + strand, within Psyr_0192at 203.440 kb on + strand, within Psyr_0192at 203.440 kb on + strand, within Psyr_0192at 203.441 kb on - strand, within Psyr_0192at 203.479 kb on + strand, within Psyr_0192at 203.479 kb on + strand, within Psyr_0192at 203.480 kb on - strand, within Psyr_0192at 203.480 kb on - strand, within Psyr_0192at 203.480 kb on - strand, within Psyr_0192at 203.555 kb on + strand, within Psyr_0192at 203.556 kb on - strand, within Psyr_0192at 203.556 kb on - strand, within Psyr_0192at 203.556 kb on - strand, within Psyr_0192at 203.556 kb on - strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.758 kb on + strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.759 kb on - strand, within Psyr_0192at 203.872 kb on + strandat 203.873 kb on - strandat 203.978 kb on + strandat 203.978 kb on + strandat 203.979 kb on - strandat 203.979 kb on - strandat 204.096 kb on - strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.200 kb on + strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.201 kb on - strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.308 kb on + strand, within Psyr_0193at 204.340 kb on - strand, within Psyr_0193at 204.340 kb on - strand, within Psyr_0193at 204.510 kb on + strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.511 kb on - strand, within Psyr_0193at 204.518 kb on + strand, within Psyr_0193at 204.519 kb on - strand, within Psyr_0193at 204.519 kb on - strand, within Psyr_0193at 204.584 kb on + strand, within Psyr_0193at 204.584 kb on + strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.585 kb on - strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.599 kb on + strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.600 kb on - strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.605 kb on + strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.606 kb on - strand, within Psyr_0193at 204.726 kb on + strand, within Psyr_0193at 204.726 kb on + strand, within Psyr_0193at 204.727 kb on - strand, within Psyr_0193at 204.737 kb on + strand, within Psyr_0193at 204.828 kb on + strandat 204.839 kb on - strandat 204.865 kb on + strandat 204.865 kb on + strandat 204.923 kb on - strandat 204.995 kb on + strandat 204.996 kb on - strandat 205.095 kb on + strandat 205.095 kb on + strandat 205.095 kb on + strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.096 kb on - strandat 205.423 kb on - strand, within Psyr_0194at 205.453 kb on + strand, within Psyr_0194at 205.453 kb on + strand, within Psyr_0194at 205.454 kb on - strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.532 kb on + strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.533 kb on - strand, within Psyr_0194at 205.733 kb on + strandat 205.733 kb on + strandat 205.733 kb on + strandat 205.734 kb on - strandat 205.734 kb on - strandat 205.734 kb on - strandat 205.787 kb on - strandat 205.800 kb on - strandat 205.800 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Glycerol (C)
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203,043 - +0.8
203,145 + -0.8
203,191 + -0.9
203,191 + -0.6
203,192 - -1.1
203,192 - -2.4
203,209 + +0.9
203,210 - +1.4
203,271 + +1.2
203,271 + -0.1
203,271 + -0.3
203,271 + -1.5
203,272 - -0.3
203,272 - -0.8
203,272 - -0.1
203,272 - +0.8
203,272 - +0.1
203,272 - -0.4
203,305 - +0.2
203,389 + Psyr_0192 0.19 -2.1
203,389 + Psyr_0192 0.19 -0.3
203,389 + Psyr_0192 0.19 +0.3
203,389 + Psyr_0192 0.19 -1.8
203,390 - Psyr_0192 0.19 -1.7
203,390 - Psyr_0192 0.19 -2.9
203,390 - Psyr_0192 0.19 -2.0
203,390 - Psyr_0192 0.19 -0.6
203,390 - Psyr_0192 0.19 +0.7
203,437 + Psyr_0192 0.26 +0.2
203,437 + Psyr_0192 0.26 -0.2
203,437 + Psyr_0192 0.26 -1.9
203,438 - Psyr_0192 0.26 +0.3
203,438 - Psyr_0192 0.26 +1.0
203,440 + Psyr_0192 0.27 +2.2
203,440 + Psyr_0192 0.27 +1.2
203,440 + Psyr_0192 0.27 +0.4
203,441 - Psyr_0192 0.27 -0.5
203,479 + Psyr_0192 0.33 -1.4
203,479 + Psyr_0192 0.33 -0.0
203,480 - Psyr_0192 0.33 -0.1
203,480 - Psyr_0192 0.33 -0.8
203,480 - Psyr_0192 0.33 +2.1
203,555 + Psyr_0192 0.45 +0.4
203,556 - Psyr_0192 0.45 +0.9
203,556 - Psyr_0192 0.45 -0.1
203,556 - Psyr_0192 0.45 +1.2
203,556 - Psyr_0192 0.45 +2.9
203,758 + Psyr_0192 0.77 -0.2
203,758 + Psyr_0192 0.77 +0.8
203,758 + Psyr_0192 0.77 +0.5
203,758 + Psyr_0192 0.77 -0.6
203,758 + Psyr_0192 0.77 -0.8
203,758 + Psyr_0192 0.77 -1.0
203,758 + Psyr_0192 0.77 -1.9
203,758 + Psyr_0192 0.77 -1.2
203,758 + Psyr_0192 0.77 -1.4
203,758 + Psyr_0192 0.77 +0.4
203,758 + Psyr_0192 0.77 -0.4
203,759 - Psyr_0192 0.77 -0.9
203,759 - Psyr_0192 0.77 +1.6
203,759 - Psyr_0192 0.77 +0.2
203,759 - Psyr_0192 0.77 -1.8
203,759 - Psyr_0192 0.77 -1.1
203,759 - Psyr_0192 0.77 +0.4
203,759 - Psyr_0192 0.77 +1.3
203,759 - Psyr_0192 0.77 +1.2
203,759 - Psyr_0192 0.77 +3.1
203,759 - Psyr_0192 0.77 -0.6
203,872 + +2.0
203,873 - +0.1
203,978 + -0.5
203,978 + +1.0
203,979 - +0.2
203,979 - +0.4
204,096 - Psyr_0193 0.19 +1.6
204,200 + Psyr_0193 0.31 +1.7
204,200 + Psyr_0193 0.31 +1.5
204,200 + Psyr_0193 0.31 -0.5
204,201 - Psyr_0193 0.31 +0.9
204,201 - Psyr_0193 0.31 -1.4
204,201 - Psyr_0193 0.31 -2.6
204,308 + Psyr_0193 0.43 +0.7
204,308 + Psyr_0193 0.43 +1.0
204,308 + Psyr_0193 0.43 +1.7
204,340 - Psyr_0193 0.46 +1.2
204,340 - Psyr_0193 0.46 -0.0
204,510 + Psyr_0193 0.65 +1.2
204,511 - Psyr_0193 0.65 -0.4
204,511 - Psyr_0193 0.65 -0.0
204,518 + Psyr_0193 0.65 -0.6
204,519 - Psyr_0193 0.66 +1.2
204,519 - Psyr_0193 0.66 +1.2
204,584 + Psyr_0193 0.73 +2.2
204,584 + Psyr_0193 0.73 -1.4
204,585 - Psyr_0193 0.73 -0.5
204,585 - Psyr_0193 0.73 +1.6
204,585 - Psyr_0193 0.73 +1.3
204,599 + Psyr_0193 0.74 +0.5
204,599 + Psyr_0193 0.74 +0.5
204,599 + Psyr_0193 0.74 +1.6
204,600 - Psyr_0193 0.74 +0.7
204,600 - Psyr_0193 0.74 +2.0
204,600 - Psyr_0193 0.74 -0.9
204,605 + Psyr_0193 0.75 -0.7
204,605 + Psyr_0193 0.75 +1.6
204,605 + Psyr_0193 0.75 -2.2
204,605 + Psyr_0193 0.75 +0.9
204,605 + Psyr_0193 0.75 +0.2
204,605 + Psyr_0193 0.75 -0.6
204,605 + Psyr_0193 0.75 -0.1
204,605 + Psyr_0193 0.75 +0.1
204,605 + Psyr_0193 0.75 +1.8
204,605 + Psyr_0193 0.75 -1.9
204,605 + Psyr_0193 0.75 -0.9
204,605 + Psyr_0193 0.75 +0.1
204,606 - Psyr_0193 0.75 +0.9
204,606 - Psyr_0193 0.75 +0.7
204,606 - Psyr_0193 0.75 +0.5
204,606 - Psyr_0193 0.75 -0.9
204,606 - Psyr_0193 0.75 +2.2
204,606 - Psyr_0193 0.75 +0.5
204,606 - Psyr_0193 0.75 +0.9
204,606 - Psyr_0193 0.75 +0.7
204,606 - Psyr_0193 0.75 -0.2
204,606 - Psyr_0193 0.75 +0.9
204,606 - Psyr_0193 0.75 -0.0
204,606 - Psyr_0193 0.75 -0.2
204,606 - Psyr_0193 0.75 +1.2
204,606 - Psyr_0193 0.75 +0.9
204,606 - Psyr_0193 0.75 +0.9
204,606 - Psyr_0193 0.75 +1.2
204,726 + Psyr_0193 0.88 +1.2
204,726 + Psyr_0193 0.88 -0.0
204,727 - Psyr_0193 0.88 -0.3
204,737 + Psyr_0193 0.89 -0.4
204,828 + +0.1
204,839 - -2.4
204,865 + -0.4
204,865 + +0.6
204,923 - +0.2
204,995 + -0.6
204,996 - +0.7
205,095 + +0.1
205,095 + -1.4
205,095 + -1.0
205,096 - +2.0
205,096 - +0.6
205,096 - +0.1
205,096 - -0.6
205,423 - Psyr_0194 0.48 +0.2
205,453 + Psyr_0194 0.52 +2.1
205,453 + Psyr_0194 0.52 +1.0
205,454 - Psyr_0194 0.52 -0.8
205,532 + Psyr_0194 0.63 -0.4
205,532 + Psyr_0194 0.63 +1.8
205,532 + Psyr_0194 0.63 -0.4
205,532 + Psyr_0194 0.63 -0.8
205,532 + Psyr_0194 0.63 -1.4
205,532 + Psyr_0194 0.63 +0.8
205,533 - Psyr_0194 0.63 +1.5
205,533 - Psyr_0194 0.63 -1.4
205,533 - Psyr_0194 0.63 +0.3
205,733 + +0.3
205,733 + +0.8
205,733 + -0.9
205,734 - +0.3
205,734 - -0.5
205,734 - +0.1
205,787 - +1.2
205,800 - +1.7
205,800 - -0.1

Or see this region's nucleotide sequence