Strain Fitness in Pantoea sp. MT58 around IAI47_18995

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
30,586	+		IAI47_18990	0.33	-0.2
30,586	+		IAI47_18990	0.33	+1.3
30,586	+		IAI47_18990	0.33	+1.1
30,587	-		IAI47_18990	0.33	+2.4
30,632	-		IAI47_18990	0.37	+1.2
30,632	-		IAI47_18990	0.37	-0.8
30,720	+		IAI47_18990	0.44	+1.8
30,721	-		IAI47_18990	0.44	+1.1
30,721	-		IAI47_18990	0.44	-0.1
30,721	-		IAI47_18990	0.44	+0.7
30,738	+		IAI47_18990	0.46	+0.4
30,739	-		IAI47_18990	0.46	+2.0
30,739	-		IAI47_18990	0.46	-0.2
30,822	+		IAI47_18990	0.53	+1.1
30,822	+		IAI47_18990	0.53	-0.3
30,822	+		IAI47_18990	0.53	+1.0
30,857	+		IAI47_18990	0.56	+1.7
30,890	+		IAI47_18990	0.59	+1.4
30,890	+		IAI47_18990	0.59	-0.5
30,890	+		IAI47_18990	0.59	+1.7
30,890	+		IAI47_18990	0.59	+3.9
30,890	+		IAI47_18990	0.59	-1.2
30,890	+		IAI47_18990	0.59	+1.3
30,891	-		IAI47_18990	0.59	+1.5
30,891	-		IAI47_18990	0.59	-0.7
30,891	-		IAI47_18990	0.59	+0.4
30,891	-		IAI47_18990	0.59	+3.4
30,891	-		IAI47_18990	0.59	+0.8
30,891	-		IAI47_18990	0.59	-0.0
30,891	-		IAI47_18990	0.59	-0.1
30,891	-		IAI47_18990	0.59	-0.1
30,892	+		IAI47_18990	0.59	-0.0
30,893	-		IAI47_18990	0.59	+1.8
30,894	+		IAI47_18990	0.59	+0.4
30,894	+		IAI47_18990	0.59	+0.2
30,894	+		IAI47_18990	0.59	+1.6
30,894	+		IAI47_18990	0.59	+2.0
30,894	+		IAI47_18990	0.59	-0.1
30,894	+		IAI47_18990	0.59	+1.0
30,894	+		IAI47_18990	0.59	+2.0
30,895	-		IAI47_18990	0.59	+0.6
30,895	-		IAI47_18990	0.59	+1.4
30,895	-		IAI47_18990	0.59	+1.7
30,895	-		IAI47_18990	0.59	-0.7
30,895	-		IAI47_18990	0.59	-0.6
30,970	+		IAI47_18990	0.66	+0.7
30,971	-		IAI47_18990	0.66	-0.8
30,971	-		IAI47_18990	0.66	+0.1
30,987	+		IAI47_18990	0.67	+2.7
30,987	+		IAI47_18990	0.67	+0.1
30,987	+		IAI47_18990	0.67	+0.9
30,988	-		IAI47_18990	0.67	-0.5
30,988	-		IAI47_18990	0.67	+1.4
30,988	-		IAI47_18990	0.67	+1.2
30,988	-		IAI47_18990	0.67	+1.8
31,039	-		IAI47_18990	0.72	+1.5
31,068	-		IAI47_18990	0.74	-0.4
31,108	+		IAI47_18990	0.78	+0.8
31,109	-		IAI47_18990	0.78	+2.4
31,317	+				+2.1
31,317	+				+1.8
31,318	-				+1.2
31,318	-				-1.3
31,318	-				+1.4
31,366	-				+1.1
31,407	-				-0.2
31,407	-				-1.1
31,407	-				-0.7
31,407	-				+1.1
31,440	-				+1.8
31,440	-				-1.0
31,457	+				+3.3
31,457	+				+1.6
31,457	+				+3.4
31,482	+				+0.6
31,482	+				-0.8
31,483	-				+0.5
31,483	-				-0.7
31,483	-				-0.3
31,492	+				-1.2
31,551	+		IAI47_18995	0.17	-1.3
31,551	+		IAI47_18995	0.17	-0.8
31,551	+		IAI47_18995	0.17	+0.5
31,551	+		IAI47_18995	0.17	+0.9
31,551	+		IAI47_18995	0.17	+1.1
31,551	+		IAI47_18995	0.17	+1.3
31,551	+		IAI47_18995	0.17	+1.4
31,551	+		IAI47_18995	0.17	-0.1
31,551	+		IAI47_18995	0.17	-1.0
31,552	-		IAI47_18995	0.17	+1.4
31,552	-		IAI47_18995	0.17	+0.6
31,552	-		IAI47_18995	0.17	+0.6
31,552	-		IAI47_18995	0.17	-1.5
31,552	-		IAI47_18995	0.17	-2.1
31,552	-		IAI47_18995	0.17	+0.8
31,553	+		IAI47_18995	0.18	+2.7
31,554	-		IAI47_18995	0.18	+0.0
31,554	-		IAI47_18995	0.18	-0.6
31,554	-		IAI47_18995	0.18	+0.2
31,554	-		IAI47_18995	0.18	+0.2
31,554	-		IAI47_18995	0.18	+0.1
31,571	+		IAI47_18995	0.20	+0.7
31,571	+		IAI47_18995	0.20	+1.6
31,619	-		IAI47_18995	0.27	+0.2
31,619	-		IAI47_18995	0.27	+1.2
31,637	+		IAI47_18995	0.30	+0.5
31,638	-		IAI47_18995	0.30	+0.8
31,670	-		IAI47_18995	0.34	-1.6
31,670	-		IAI47_18995	0.34	-0.3
31,670	-		IAI47_18995	0.34	-1.1
31,676	+		IAI47_18995	0.35	+1.1
31,691	+		IAI47_18995	0.38	+0.9
31,691	+		IAI47_18995	0.38	+1.0
31,691	+		IAI47_18995	0.38	+1.1
31,691	+		IAI47_18995	0.38	+2.7
31,691	+		IAI47_18995	0.38	+0.0
31,692	-		IAI47_18995	0.38	-1.1
31,692	-		IAI47_18995	0.38	+0.2
31,739	+		IAI47_18995	0.44	+0.6
31,739	+		IAI47_18995	0.44	+0.3
31,740	-		IAI47_18995	0.45	-1.6
31,740	-		IAI47_18995	0.45	-0.8
31,764	-		IAI47_18995	0.48	-0.9
31,764	-		IAI47_18995	0.48	-0.4
31,784	+		IAI47_18995	0.51	+0.5
31,784	+		IAI47_18995	0.51	+0.4
31,784	+		IAI47_18995	0.51	+0.8
31,785	-		IAI47_18995	0.51	+1.4
31,785	-		IAI47_18995	0.51	-0.9
31,785	-		IAI47_18995	0.51	-0.8
31,785	-		IAI47_18995	0.51	-0.2
31,914	+		IAI47_18995	0.70	+2.4
31,915	-		IAI47_18995	0.70	-0.9
31,915	-		IAI47_18995	0.70	-2.6
32,030	+		IAI47_18995	0.86	-1.3
32,031	-		IAI47_18995	0.87	-0.3
32,075	+				+0.1
32,075	+				+0.6
32,075	+				-0.2
32,076	-				-1.6
32,076	-				-1.3
32,076	-				-0.0
32,076	-				+2.7
32,076	-				+1.2
32,076	-				-0.8
32,078	+				+0.8
32,078	+				-0.2
32,078	+				-0.7
32,079	-				-0.0
32,079	-				+0.9
32,079	-				-0.0
32,079	-				-0.2
32,121	+				-0.5
32,121	+				+0.6
32,164	+				+1.0
32,165	-				+1.7
32,169	-				+0.3
32,289	+		IAI47_19000	0.40	+0.4
32,301	+		IAI47_19000	0.44	+1.7
32,301	+		IAI47_19000	0.44	-0.5
32,301	+		IAI47_19000	0.44	+1.4
32,301	+		IAI47_19000	0.44	+1.1
32,301	+		IAI47_19000	0.44	-0.3
32,333	+		IAI47_19000	0.53	-0.4
32,333	+		IAI47_19000	0.53	-1.6
32,333	+		IAI47_19000	0.53	+1.5
32,333	+		IAI47_19000	0.53	-0.0
32,334	-		IAI47_19000	0.54	-1.8
32,334	-		IAI47_19000	0.54	-0.2
32,345	+		IAI47_19000	0.57	+3.3
32,346	-		IAI47_19000	0.57	-0.4
32,393	-		IAI47_19000	0.72	+2.1
32,412	+		IAI47_19000	0.77	+0.7
32,412	+		IAI47_19000	0.77	+0.4
32,412	+		IAI47_19000	0.77	+0.8
32,420	-		IAI47_19000	0.80	-0.2
32,420	-		IAI47_19000	0.80	+1.9
32,420	-		IAI47_19000	0.80	+1.6
32,420	-		IAI47_19000	0.80	+1.8
32,450	+		IAI47_19000	0.89	-1.3
32,450	+		IAI47_19000	0.89	+0.4
32,451	-		IAI47_19000	0.89	-0.0
32,451	-		IAI47_19000	0.89	+1.1
32,474	+				+2.4
32,475	-				+0.8
32,493	+				+2.2
32,494	-				+1.1
32,494	-				-1.0
32,587	+				-0.2
32,595	+				+1.3
32,595	+				+1.1
32,596	-				+0.2
32,610	-				-0.5
32,645	+				+1.1
32,645	+				-1.9
32,645	+				-0.0
32,645	+				+0.4
32,645	+				+0.4
32,646	-				-1.0
32,646	-				+1.4
32,646	-				-0.8
32,659	+				+1.6
32,659	+				-0.5
32,659	+				+0.9
32,660	-				+0.2
32,660	-				+1.5
32,662	+				+0.6
32,662	+				+0.8
32,662	+				+1.4
32,663	-				+0.6
32,663	-				-0.2
32,746	+		IAI47_19005	0.13	+1.4
32,747	-		IAI47_19005	0.13	-1.6
32,783	+		IAI47_19005	0.17	+1.1
32,783	+		IAI47_19005	0.17	+1.4
32,783	+		IAI47_19005	0.17	+0.4
32,784	-		IAI47_19005	0.17	+1.2
32,825	+		IAI47_19005	0.23	+1.1
32,825	+		IAI47_19005	0.23	-0.2
32,825	+		IAI47_19005	0.23	-0.0
32,825	+		IAI47_19005	0.23	+2.8
32,825	+		IAI47_19005	0.23	+0.2
32,825	+		IAI47_19005	0.23	+0.0
32,825	+		IAI47_19005	0.23	-0.3
32,825	+		IAI47_19005	0.23	-0.8
32,826	-		IAI47_19005	0.23	-0.7
32,826	-		IAI47_19005	0.23	+0.5
32,826	-		IAI47_19005	0.23	+0.3
32,826	-		IAI47_19005	0.23	+0.5
32,826	-		IAI47_19005	0.23	-0.8
32,826	-		IAI47_19005	0.23	-0.6
32,826	-		IAI47_19005	0.23	-1.4
32,861	-		IAI47_19005	0.27	+1.2
32,888	-		IAI47_19005	0.30	+0.6
32,927	+		IAI47_19005	0.35	+2.0
32,927	+		IAI47_19005	0.35	-0.5
32,928	-		IAI47_19005	0.35	-0.1
32,953	+		IAI47_19005	0.39	-0.0
32,953	+		IAI47_19005	0.39	-0.2
32,953	+		IAI47_19005	0.39	+1.2
32,953	+		IAI47_19005	0.39	+2.1
32,953	+		IAI47_19005	0.39	-0.7
32,954	-		IAI47_19005	0.39	+0.6
32,954	-		IAI47_19005	0.39	+0.2
32,954	-		IAI47_19005	0.39	-0.0
32,954	-		IAI47_19005	0.39	-1.1
32,958	-		IAI47_19005	0.39	+0.1
32,966	+		IAI47_19005	0.40	+0.9
32,966	+		IAI47_19005	0.40	-1.6
32,966	+		IAI47_19005	0.40	-0.7
32,966	+		IAI47_19005	0.40	+1.5
32,966	+		IAI47_19005	0.40	-0.5
32,966	+		IAI47_19005	0.40	-0.0
32,967	-		IAI47_19005	0.40	-0.5
32,967	-		IAI47_19005	0.40	+1.6
32,967	-		IAI47_19005	0.40	-1.7
32,972	-		IAI47_19005	0.41	+2.4
32,972	-		IAI47_19005	0.41	-1.8
32,972	-		IAI47_19005	0.41	-1.7
32,972	-		IAI47_19005	0.41	-0.3
32,972	-		IAI47_19005	0.41	+0.9
32,972	-		IAI47_19005	0.41	-1.7
32,994	-		IAI47_19005	0.44	-2.0
32,994	-		IAI47_19005	0.44	+1.0
32,994	-		IAI47_19005	0.44	-1.3
33,048	+		IAI47_19005	0.51	+0.1
33,048	+		IAI47_19005	0.51	+2.4
33,049	-		IAI47_19005	0.51	-0.8
33,049	-		IAI47_19005	0.51	-0.1
33,107	+		IAI47_19005	0.58	+1.2
33,108	-		IAI47_19005	0.58	+0.7
33,108	-		IAI47_19005	0.58	+0.2