Strain Fitness in Pantoea sp. MT58 around IAI47_16650

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,524,911	-		IAI47_16635	0.64	-2.2
3,524,923	-		IAI47_16635	0.67	-1.6
3,524,923	-		IAI47_16635	0.67	-1.2
3,524,926	-		IAI47_16635	0.68	-3.1
3,524,926	-		IAI47_16635	0.68	-0.6
3,524,930	+		IAI47_16635	0.69	-2.4
3,524,931	-		IAI47_16635	0.69	-0.9
3,524,931	-		IAI47_16635	0.69	+0.6
3,524,931	-		IAI47_16635	0.69	-1.9
3,524,947	+		IAI47_16635	0.74	+0.3
3,524,947	+		IAI47_16635	0.74	+1.1
3,524,947	+		IAI47_16635	0.74	+1.9
3,524,951	+		IAI47_16635	0.75	-0.9
3,524,952	-		IAI47_16635	0.75	-2.4
3,524,952	-		IAI47_16635	0.75	-1.8
3,524,952	-		IAI47_16635	0.75	-1.7
3,524,968	-		IAI47_16635	0.80	-0.0
3,524,974	+		IAI47_16635	0.81	-0.1
3,524,974	+		IAI47_16635	0.81	-0.3
3,524,975	-		IAI47_16635	0.82	-2.2
3,524,978	+		IAI47_16635	0.82	-0.9
3,524,978	+		IAI47_16635	0.82	+3.8
3,524,978	+		IAI47_16635	0.82	+1.4
3,524,989	+		IAI47_16635	0.86	+3.0
3,524,989	+		IAI47_16635	0.86	-1.3
3,524,989	+		IAI47_16635	0.86	-2.0
3,524,990	-		IAI47_16635	0.86	-0.8
3,524,990	-		IAI47_16635	0.86	-1.0
3,524,990	-		IAI47_16635	0.86	-0.8
3,525,004	-				-1.9
3,525,026	-				+0.5
3,525,033	+				-0.9
3,525,033	+				-1.1
3,525,034	-				-0.6
3,525,034	-				-1.7
3,525,036	-				-0.9
3,525,037	+				+2.2
3,525,037	+				-1.0
3,525,037	+				+0.7
3,525,038	-				-1.3
3,525,038	-				-2.9
3,525,073	+				+1.2
3,525,073	+				-0.9
3,525,074	-				-1.5
3,525,079	+				+1.4
3,525,079	+				-1.6
3,525,089	+				-0.3
3,525,089	+				-1.2
3,525,089	+				-0.2
3,525,089	+				+0.7
3,525,089	+				+0.3
3,525,089	+				-1.5
3,525,089	+				+0.9
3,525,089	+				+2.2
3,525,090	-				-1.6
3,525,090	-				-0.8
3,525,090	-				+0.2
3,525,090	-				-1.1
3,525,108	-		IAI47_16640	0.15	-0.5
3,525,108	-		IAI47_16640	0.15	-0.5
3,525,134	+		IAI47_16640	0.23	-0.1
3,525,134	+		IAI47_16640	0.23	+1.6
3,525,162	+		IAI47_16640	0.31	-0.1
3,525,162	+		IAI47_16640	0.31	+0.1
3,525,163	-		IAI47_16640	0.31	-1.9
3,525,163	-		IAI47_16640	0.31	-0.5
3,525,168	+		IAI47_16640	0.33	+0.3
3,525,168	+		IAI47_16640	0.33	+0.5
3,525,169	-		IAI47_16640	0.33	-1.6
3,525,169	-		IAI47_16640	0.33	-3.0
3,525,170	+		IAI47_16640	0.34	+2.1
3,525,171	-		IAI47_16640	0.34	-3.5
3,525,189	+		IAI47_16640	0.39	-2.1
3,525,190	-		IAI47_16640	0.40	-3.4
3,525,191	+		IAI47_16640	0.40	+1.9
3,525,197	+		IAI47_16640	0.42	-0.4
3,525,197	+		IAI47_16640	0.42	+0.7
3,525,197	+		IAI47_16640	0.42	+0.7
3,525,198	-		IAI47_16640	0.42	-0.8
3,525,198	-		IAI47_16640	0.42	-2.0
3,525,198	-		IAI47_16640	0.42	-1.4
3,525,210	+		IAI47_16640	0.46	-1.1
3,525,210	+		IAI47_16640	0.46	+1.5
3,525,223	+		IAI47_16640	0.50	+2.1
3,525,223	+		IAI47_16640	0.50	+1.2
3,525,223	+		IAI47_16640	0.50	+0.5
3,525,223	+		IAI47_16640	0.50	+0.7
3,525,223	+		IAI47_16640	0.50	+0.5
3,525,223	+		IAI47_16640	0.50	-0.1
3,525,224	-		IAI47_16640	0.50	-1.1
3,525,247	+		IAI47_16640	0.57	-0.0
3,525,247	+		IAI47_16640	0.57	+0.7
3,525,247	+		IAI47_16640	0.57	-0.2
3,525,247	+		IAI47_16640	0.57	+0.1
3,525,247	+		IAI47_16640	0.57	-0.3
3,525,248	-		IAI47_16640	0.57	-1.0
3,525,248	-		IAI47_16640	0.57	-2.5
3,525,248	-		IAI47_16640	0.57	-2.0
3,525,248	-		IAI47_16640	0.57	-3.9
3,525,248	-		IAI47_16640	0.57	-1.6
3,525,248	-		IAI47_16640	0.57	-2.8
3,525,266	+		IAI47_16640	0.63	+0.9
3,525,266	+		IAI47_16640	0.63	+1.7
3,525,266	+		IAI47_16640	0.63	+0.7
3,525,267	-		IAI47_16640	0.63	-2.4
3,525,287	+		IAI47_16640	0.69	+0.5
3,525,287	+		IAI47_16640	0.69	-0.1
3,525,287	+		IAI47_16640	0.69	+0.7
3,525,287	+		IAI47_16640	0.69	+0.6
3,525,288	-		IAI47_16640	0.70	-1.4
3,525,297	+		IAI47_16640	0.72	-1.1
3,525,297	+		IAI47_16640	0.72	-0.4
3,525,298	-		IAI47_16640	0.73	-1.1
3,525,298	-		IAI47_16640	0.73	-1.1
3,525,298	-		IAI47_16640	0.73	-0.8
3,525,322	+		IAI47_16640	0.80	-1.3
3,525,323	-		IAI47_16640	0.80	-0.9
3,525,324	+		IAI47_16640	0.81	+0.7
3,525,324	+		IAI47_16640	0.81	-2.8
3,525,324	+		IAI47_16640	0.81	+0.5
3,525,324	+		IAI47_16640	0.81	-0.3
3,525,324	+		IAI47_16640	0.81	+2.2
3,525,324	+		IAI47_16640	0.81	+1.1
3,525,324	+		IAI47_16640	0.81	+2.9
3,525,324	+		IAI47_16640	0.81	-0.5
3,525,325	-		IAI47_16640	0.81	-1.0
3,525,325	-		IAI47_16640	0.81	-2.1
3,525,325	-		IAI47_16640	0.81	-1.0
3,525,325	-		IAI47_16640	0.81	-0.9
3,525,325	-		IAI47_16640	0.81	-1.5
3,525,325	-		IAI47_16640	0.81	-1.6
3,525,332	+		IAI47_16640	0.83	+2.6
3,525,333	-		IAI47_16640	0.83	+0.5
3,525,333	-		IAI47_16640	0.83	-0.5
3,525,338	+		IAI47_16640	0.85	+0.7
3,525,338	+		IAI47_16640	0.85	-0.4
3,525,338	+		IAI47_16640	0.85	+2.1
3,525,338	+		IAI47_16640	0.85	+2.6
3,525,339	-		IAI47_16640	0.85	-1.0
3,525,339	-		IAI47_16640	0.85	-2.3
3,525,339	-		IAI47_16640	0.85	-1.2
3,525,361	+				+0.2
3,525,362	-				+0.5
3,525,362	-				-1.9
3,525,384	+				-0.3
3,525,384	+				-0.1
3,525,419	+				+1.6
3,525,463	+				+1.1
3,525,463	+				+0.7
3,525,463	+				+1.0
3,525,464	-				-1.8
3,525,464	-				-1.8
3,525,464	-				-1.3
3,525,464	-				-3.6
3,525,469	+				+1.1
3,525,469	+				-0.5
3,525,469	+				+0.8
3,525,470	-				-3.1
3,525,470	-				-1.1
3,525,470	-				+0.1
3,525,470	-				-0.5
3,525,470	-				-0.6
3,525,470	-				-2.1
3,525,526	+		IAI47_16645	0.24	+1.2
3,525,526	+		IAI47_16645	0.24	+2.2
3,525,526	+		IAI47_16645	0.24	-1.5
3,525,528	+		IAI47_16645	0.25	+1.9
3,525,539	+		IAI47_16645	0.28	+0.5
3,525,583	-		IAI47_16645	0.41	-0.5
3,525,583	-		IAI47_16645	0.41	-1.1
3,525,583	-		IAI47_16645	0.41	-2.6
3,525,583	-		IAI47_16645	0.41	-1.3
3,525,583	-		IAI47_16645	0.41	-0.7
3,525,583	-		IAI47_16645	0.41	-0.9
3,525,594	+		IAI47_16645	0.45	-0.1
3,525,594	+		IAI47_16645	0.45	-1.5
3,525,594	+		IAI47_16645	0.45	+0.3
3,525,595	-		IAI47_16645	0.45	-1.2
3,525,598	+		IAI47_16645	0.46	+0.4
3,525,598	+		IAI47_16645	0.46	+0.7
3,525,599	-		IAI47_16645	0.46	-0.6
3,525,599	-		IAI47_16645	0.46	-3.6
3,525,599	-		IAI47_16645	0.46	-0.5
3,525,617	+		IAI47_16645	0.52	+1.5
3,525,617	+		IAI47_16645	0.52	-1.3
3,525,617	+		IAI47_16645	0.52	-2.1
3,525,617	+		IAI47_16645	0.52	+0.5
3,525,617	+		IAI47_16645	0.52	+1.1
3,525,618	-		IAI47_16645	0.52	+0.4
3,525,618	-		IAI47_16645	0.52	-0.9
3,525,618	-		IAI47_16645	0.52	-2.3
3,525,618	-		IAI47_16645	0.52	-1.3
3,525,618	-		IAI47_16645	0.52	-1.5
3,525,618	-		IAI47_16645	0.52	-1.6
3,525,626	+		IAI47_16645	0.54	+0.1
3,525,626	+		IAI47_16645	0.54	+0.2
3,525,626	+		IAI47_16645	0.54	+1.4
3,525,626	+		IAI47_16645	0.54	-0.1
3,525,627	-		IAI47_16645	0.55	-1.9
3,525,627	-		IAI47_16645	0.55	-1.7
3,525,627	-		IAI47_16645	0.55	-2.2
3,525,654	+		IAI47_16645	0.63	-2.5
3,525,654	+		IAI47_16645	0.63	-0.6
3,525,655	-		IAI47_16645	0.63	-1.4
3,525,655	-		IAI47_16645	0.63	+0.4
3,525,658	+		IAI47_16645	0.64	-1.6
3,525,658	+		IAI47_16645	0.64	-0.7
3,525,658	+		IAI47_16645	0.64	+0.5
3,525,658	+		IAI47_16645	0.64	+0.2
3,525,658	+		IAI47_16645	0.64	+0.6
3,525,659	-		IAI47_16645	0.64	-2.9
3,525,659	-		IAI47_16645	0.64	-1.7
3,525,659	-		IAI47_16645	0.64	-3.2
3,525,659	-		IAI47_16645	0.64	-1.9
3,525,659	-		IAI47_16645	0.64	-0.8
3,525,662	+		IAI47_16645	0.65	+1.0
3,525,662	+		IAI47_16645	0.65	+0.9
3,525,662	+		IAI47_16645	0.65	-0.4
3,525,662	+		IAI47_16645	0.65	+0.1
3,525,662	+		IAI47_16645	0.65	+0.1
3,525,662	+		IAI47_16645	0.65	+1.0
3,525,663	-		IAI47_16645	0.65	-2.3
3,525,663	-		IAI47_16645	0.65	-2.3
3,525,677	+		IAI47_16645	0.70	+0.0
3,525,705	+		IAI47_16645	0.78	+0.3
3,525,706	-		IAI47_16645	0.78	-0.2
3,525,707	+		IAI47_16645	0.79	+0.2
3,525,707	+		IAI47_16645	0.79	+0.4
3,525,708	-		IAI47_16645	0.79	-0.5
3,525,723	+		IAI47_16645	0.84	+0.2
3,525,723	+		IAI47_16645	0.84	+1.7
3,525,723	+		IAI47_16645	0.84	+0.7
3,525,723	+		IAI47_16645	0.84	-0.4
3,525,723	+		IAI47_16645	0.84	+0.6
3,525,723	+		IAI47_16645	0.84	-0.5
3,525,724	-		IAI47_16645	0.84	-1.1
3,525,724	-		IAI47_16645	0.84	-0.5
3,525,724	-		IAI47_16645	0.84	-2.1
3,525,724	-		IAI47_16645	0.84	-4.0
3,525,753	+				-0.0
3,525,754	-				-2.0
3,525,756	+				+0.5
3,525,756	+				+0.3
3,525,756	+				+1.8
3,525,771	-				-1.9
3,525,774	+				+1.0
3,525,774	+				+0.3
3,525,774	+				+1.2
3,525,774	+				-0.6
3,525,774	+				+0.0
3,525,775	-				-1.6
3,525,775	-				-1.2
3,525,775	-				-1.3
3,525,775	-				-1.9
3,525,775	-				+0.0
3,525,775	-				-1.2
3,525,779	-				+0.6
3,525,789	+				+0.1
3,525,790	-				-1.9
3,525,810	+				+0.1
3,525,811	-				-2.3
3,525,821	+				-0.5
3,525,821	+				-1.5
3,525,821	+				-0.7
3,525,828	-				-2.4
3,525,828	-				-1.2
3,525,833	+				+1.3
3,525,834	-				-1.5
3,525,846	+				-0.6
3,525,846	+				-0.7
3,525,846	+				+0.5
3,525,847	-				-0.8
3,525,918	+				+0.9
3,525,919	-				-3.6
3,525,919	-				-0.8
3,525,919	-				-1.5
3,525,919	-				-0.6
3,525,921	+		IAI47_16650	0.10	+0.5
3,525,921	+		IAI47_16650	0.10	+0.9
3,525,921	+		IAI47_16650	0.10	+0.5
3,525,921	+		IAI47_16650	0.10	+0.1
3,525,921	+		IAI47_16650	0.10	+2.4
3,525,921	+		IAI47_16650	0.10	+0.6
3,525,921	+		IAI47_16650	0.10	+2.0
3,525,921	+		IAI47_16650	0.10	-0.7
3,525,922	-		IAI47_16650	0.11	-2.5
3,525,922	-		IAI47_16650	0.11	-3.0
3,525,922	-		IAI47_16650	0.11	-2.2
3,525,922	-		IAI47_16650	0.11	-0.9
3,525,922	-		IAI47_16650	0.11	-2.0
3,525,946	-		IAI47_16650	0.22	-1.7
3,525,956	+		IAI47_16650	0.27	+1.2
3,525,956	+		IAI47_16650	0.27	+4.9
3,525,957	-		IAI47_16650	0.28	-1.1
3,525,957	-		IAI47_16650	0.28	-1.1
3,525,957	-		IAI47_16650	0.28	-1.0
3,525,988	+		IAI47_16650	0.43	+2.5
3,525,994	+		IAI47_16650	0.45	+1.4
3,525,994	+		IAI47_16650	0.45	+3.5
3,525,994	+		IAI47_16650	0.45	+1.0
3,525,994	+		IAI47_16650	0.45	+1.2
3,525,994	+		IAI47_16650	0.45	-1.0
3,525,994	+		IAI47_16650	0.45	+2.2
3,525,995	-		IAI47_16650	0.46	-1.3
3,525,995	-		IAI47_16650	0.46	-0.8
3,525,996	+		IAI47_16650	0.46	-0.8
3,525,997	-		IAI47_16650	0.47	-1.6
3,525,997	-		IAI47_16650	0.47	-3.0
3,525,997	-		IAI47_16650	0.47	-2.0
3,525,997	-		IAI47_16650	0.47	-2.7
3,526,007	+		IAI47_16650	0.52	+1.0
3,526,033	+		IAI47_16650	0.64	+2.1
3,526,033	+		IAI47_16650	0.64	-1.1
3,526,034	-		IAI47_16650	0.65	+1.0
3,526,051	+		IAI47_16650	0.73	+2.7
3,526,076	+		IAI47_16650	0.85	+1.2
3,526,076	+		IAI47_16650	0.85	+0.2
3,526,077	-		IAI47_16650	0.86	-1.9
3,526,104	+				-1.5
3,526,104	+				-1.3
3,526,104	+				+0.2
3,526,105	-				+0.2
3,526,112	+				-0.0
3,526,134	-				-0.2
3,526,134	-				-0.1
3,526,134	-				+0.8
3,526,134	-				-1.1
3,526,134	-				-0.1
3,526,142	+				+0.3
3,526,143	-				-1.7
3,526,159	+				+0.4
3,526,159	+				+0.2
3,526,159	+				+1.1
3,526,160	-				-0.6
3,526,162	+				+0.9
3,526,162	+				+1.1
3,526,162	+				+0.7
3,526,162	+				-0.1
3,526,162	+				+0.7
3,526,163	-				-0.8
3,526,163	-				+0.7
3,526,215	+				-1.1
3,526,215	+				-0.2
3,526,215	+				-0.9
3,526,215	+				+0.3
3,526,216	-				+0.7
3,526,216	-				-0.8
3,526,231	+				-0.1
3,526,231	+				-0.1
3,526,238	-				+0.2
3,526,274	+				+0.0
3,526,274	+				-0.5
3,526,274	+				-0.3
3,526,274	+				-0.4
3,526,274	+				+0.7
3,526,275	-				-1.1
3,526,279	-				-0.3
3,526,288	+				-1.8
3,526,288	+				+0.3
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3,526,993	+		IAI47_16660	0.19	-1.8
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3,527,034	-		IAI47_16660	0.23	+2.4
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3,527,063	-		IAI47_16660	0.26	+0.6
3,527,063	-		IAI47_16660	0.26	-0.2
3,527,073	-		IAI47_16660	0.27	-0.4
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3,527,074	+		IAI47_16660	0.27	-0.5
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3,527,075	-		IAI47_16660	0.27	-0.5
3,527,103	+		IAI47_16660	0.30	+0.2
3,527,103	+		IAI47_16660	0.30	-0.1
3,527,104	-		IAI47_16660	0.30	+0.2