Strain Fitness in Pantoea sp. MT58 around IAI47_09865

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
2,087,362	+		IAI47_09855	0.44	+1.7
2,087,362	+		IAI47_09855	0.44	+2.7
2,087,363	-		IAI47_09855	0.45	-0.6
2,087,363	-		IAI47_09855	0.45	-2.4
2,087,422	+		IAI47_09855	0.58	+1.2
2,087,422	+		IAI47_09855	0.58	+0.5
2,087,422	+		IAI47_09855	0.58	+0.6
2,087,422	+		IAI47_09855	0.58	+2.8
2,087,422	+		IAI47_09855	0.58	+1.9
2,087,422	+		IAI47_09855	0.58	+2.3
2,087,423	-		IAI47_09855	0.58	-1.3
2,087,423	-		IAI47_09855	0.58	-0.8
2,087,423	-		IAI47_09855	0.58	-1.4
2,087,423	-		IAI47_09855	0.58	-0.3
2,087,454	+		IAI47_09855	0.65	+1.4
2,087,455	-		IAI47_09855	0.65	-1.2
2,087,509	-		IAI47_09855	0.77	+1.1
2,087,574	+				+2.1
2,087,607	+				+1.6
2,087,607	+				+1.7
2,087,607	+				+2.1
2,087,608	-				-0.7
2,087,628	+				+1.3
2,087,649	+				+1.0
2,087,649	+				+2.3
2,087,649	+				+0.1
2,087,684	+		IAI47_09860	0.15	+2.5
2,087,684	+		IAI47_09860	0.15	+1.4
2,087,688	+		IAI47_09860	0.16	+3.3
2,087,688	+		IAI47_09860	0.16	+3.2
2,087,727	+		IAI47_09860	0.24	+4.9
2,087,727	+		IAI47_09860	0.24	+0.4
2,087,727	+		IAI47_09860	0.24	+1.5
2,087,727	+		IAI47_09860	0.24	+3.2
2,087,727	+		IAI47_09860	0.24	+2.9
2,087,727	+		IAI47_09860	0.24	+1.4
2,087,728	-		IAI47_09860	0.24	+0.1
2,087,728	-		IAI47_09860	0.24	+1.0
2,087,728	-		IAI47_09860	0.24	+0.7
2,087,728	-		IAI47_09860	0.24	-0.6
2,087,728	-		IAI47_09860	0.24	-0.0
2,087,767	+		IAI47_09860	0.33	+1.5
2,087,767	+		IAI47_09860	0.33	+0.3
2,087,802	+		IAI47_09860	0.40	+5.3
2,087,803	-		IAI47_09860	0.40	-2.4
2,087,807	+		IAI47_09860	0.41	+4.8
2,087,808	-		IAI47_09860	0.41	-1.2
2,087,808	-		IAI47_09860	0.41	-0.0
2,087,819	+		IAI47_09860	0.44	+1.7
2,087,820	-		IAI47_09860	0.44	-1.0
2,087,900	+		IAI47_09860	0.61	+1.1
2,087,901	-		IAI47_09860	0.61	-0.3
2,088,090	-				-0.5
2,088,205	+				+0.5
2,088,205	+				+1.1
2,088,222	+				+1.9
2,088,223	-				+2.0
2,088,228	+				+0.9
2,088,229	-				+0.6
2,088,229	-				-1.0
2,088,276	+				-1.1
2,088,306	+				-0.4
2,088,306	+				-0.4
2,088,307	-				+0.7
2,088,307	-				+1.7
2,088,307	-				-0.9
2,088,307	-				+0.4
2,088,307	-				+1.8
2,088,417	+		IAI47_09865	0.21	-0.6
2,088,470	-		IAI47_09865	0.27	+0.5
2,088,517	-		IAI47_09865	0.32	+2.1
2,088,517	-		IAI47_09865	0.32	+0.3
2,088,530	-		IAI47_09865	0.34	+0.8
2,088,541	+		IAI47_09865	0.35	-2.1
2,088,562	+		IAI47_09865	0.37	-0.7
2,088,562	+		IAI47_09865	0.37	-0.2
2,088,562	+		IAI47_09865	0.37	-0.7
2,088,562	+		IAI47_09865	0.37	+0.4
2,088,565	+		IAI47_09865	0.38	+0.5
2,088,568	+		IAI47_09865	0.38	+0.3
2,088,568	+		IAI47_09865	0.38	+1.0
2,088,568	+		IAI47_09865	0.38	-0.5
2,088,569	-		IAI47_09865	0.38	+0.3
2,088,569	-		IAI47_09865	0.38	+1.0
2,088,627	+		IAI47_09865	0.45	-1.2
2,088,628	-		IAI47_09865	0.45	+0.5
2,088,628	-		IAI47_09865	0.45	-0.7
2,088,635	-		IAI47_09865	0.46	-0.3
2,088,635	-		IAI47_09865	0.46	-1.4
2,088,641	-		IAI47_09865	0.46	-0.9
2,088,689	-		IAI47_09865	0.52	+0.7
2,088,722	-		IAI47_09865	0.55	-0.0
2,088,735	-		IAI47_09865	0.57	-3.5
2,088,873	+		IAI47_09865	0.72	-0.2
2,088,874	-		IAI47_09865	0.72	+1.2
2,088,884	+		IAI47_09865	0.73	+1.0
2,088,884	+		IAI47_09865	0.73	-0.0
2,088,884	+		IAI47_09865	0.73	-1.3
2,088,884	+		IAI47_09865	0.73	-0.9
2,088,884	+		IAI47_09865	0.73	-1.2
2,088,884	+		IAI47_09865	0.73	-1.2
2,088,884	+		IAI47_09865	0.73	-1.1
2,088,884	+		IAI47_09865	0.73	-0.5
2,088,885	-		IAI47_09865	0.74	-0.7
2,088,906	+		IAI47_09865	0.76	-0.0
2,088,917	+		IAI47_09865	0.77	+0.7
2,088,917	+		IAI47_09865	0.77	-0.2
2,088,917	+		IAI47_09865	0.77	-0.9
2,088,952	+		IAI47_09865	0.81	-1.3
2,088,952	+		IAI47_09865	0.81	+0.2
2,088,953	-		IAI47_09865	0.81	-1.4
2,088,953	-		IAI47_09865	0.81	+1.5
2,088,990	+		IAI47_09865	0.85	+0.5
2,089,106	-				-0.2
2,089,123	+				+1.6
2,089,123	+				-0.7
2,089,123	+				+0.5
2,089,123	+				-1.2
2,089,123	+				-0.9
2,089,123	+				-0.5
2,089,123	+				-0.0
2,089,123	+				-0.8
2,089,123	+				+1.8
2,089,124	-				-0.3
2,089,124	-				-2.0
2,089,124	-				+1.4
2,089,124	-				+1.7
2,089,124	-				-0.6
2,089,142	+				+1.4
2,089,142	+				+0.7
2,089,154	+				-1.2
2,089,154	+				-0.0
2,089,154	+				-0.9
2,089,154	+				+1.6
2,089,155	-				-0.1
2,089,155	-				+1.6
2,089,155	-				-0.2
2,089,155	-				-0.7
2,089,155	-				+0.5
2,089,229	+				+0.8
2,089,229	+				-0.2
2,089,229	+				-1.9
2,089,230	-				+1.7
2,089,230	-				+2.6
2,089,230	-				-1.3
2,089,245	+				+0.8
2,089,246	-				-1.3
2,089,311	-				+0.6
2,089,340	-				-0.1
2,089,340	-				-0.9
2,089,342	+				-0.4
2,089,351	+				+0.1
2,089,428	-				-1.3
2,089,429	+				-0.4
2,089,429	+				+3.3
2,089,429	+				+1.1
2,089,430	-				-0.3
2,089,430	-				-1.6
2,089,430	-				+0.5
2,089,430	-				+0.3
2,089,430	-				+1.4
2,089,430	-				+1.0
2,089,556	+		IAI47_09870	0.17	-0.1
2,089,556	+		IAI47_09870	0.17	-0.4
2,089,556	+		IAI47_09870	0.17	-0.5
2,089,557	-		IAI47_09870	0.17	+0.3
2,089,557	-		IAI47_09870	0.17	+0.4
2,089,581	+		IAI47_09870	0.19	-0.9
2,089,582	-		IAI47_09870	0.19	+0.8
2,089,582	-		IAI47_09870	0.19	+0.4
2,089,932	+		IAI47_09870	0.53	+0.9
2,089,933	-		IAI47_09870	0.53	-0.1
2,089,935	+		IAI47_09870	0.53	+0.3
2,089,969	-		IAI47_09870	0.57	-0.4
2,089,998	-		IAI47_09870	0.59	+1.4
2,090,010	+		IAI47_09870	0.60	-0.9
2,090,028	+		IAI47_09870	0.62	-0.1
2,090,041	-		IAI47_09870	0.63	+0.4
2,090,041	-		IAI47_09870	0.63	+2.3