Strain Fitness in Pantoea sp. MT58 around IAI47_08585

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
1,812,951	-		IAI47_08575	0.32	-1.1
1,813,069	+		IAI47_08575	0.45	+1.5
1,813,070	-		IAI47_08575	0.45	+0.4
1,813,115	+		IAI47_08575	0.51	-2.2
1,813,116	-		IAI47_08575	0.51	-0.2
1,813,116	-		IAI47_08575	0.51	-0.2
1,813,116	-		IAI47_08575	0.51	-0.5
1,813,118	+		IAI47_08575	0.51	+0.3
1,813,118	+		IAI47_08575	0.51	+0.4
1,813,151	+		IAI47_08575	0.55	-0.3
1,813,151	+		IAI47_08575	0.55	+1.0
1,813,151	+		IAI47_08575	0.55	+0.6
1,813,151	+		IAI47_08575	0.55	-0.5
1,813,151	+		IAI47_08575	0.55	-0.3
1,813,151	+		IAI47_08575	0.55	-0.9
1,813,151	+		IAI47_08575	0.55	+0.5
1,813,151	+		IAI47_08575	0.55	+0.5
1,813,151	+		IAI47_08575	0.55	+0.3
1,813,151	+		IAI47_08575	0.55	+0.1
1,813,151	+		IAI47_08575	0.55	+0.0
1,813,152	-		IAI47_08575	0.55	-0.4
1,813,152	-		IAI47_08575	0.55	-1.0
1,813,152	-		IAI47_08575	0.55	-1.3
1,813,152	-		IAI47_08575	0.55	-0.5
1,813,152	-		IAI47_08575	0.55	-1.4
1,813,152	-		IAI47_08575	0.55	+0.8
1,813,152	-		IAI47_08575	0.55	-0.8
1,813,152	-		IAI47_08575	0.55	+0.8
1,813,153	+		IAI47_08575	0.55	+1.0
1,813,153	+		IAI47_08575	0.55	-2.1
1,813,153	+		IAI47_08575	0.55	+2.0
1,813,153	+		IAI47_08575	0.55	+2.1
1,813,154	-		IAI47_08575	0.55	+1.7
1,813,154	-		IAI47_08575	0.55	+0.8
1,813,154	-		IAI47_08575	0.55	-0.7
1,813,204	+		IAI47_08575	0.60	+0.7
1,813,205	-		IAI47_08575	0.61	-1.1
1,813,246	+		IAI47_08575	0.65	+0.3
1,813,247	-		IAI47_08575	0.65	-0.5
1,813,247	-		IAI47_08575	0.65	-0.2
1,813,250	+		IAI47_08575	0.66	-0.6
1,813,251	-		IAI47_08575	0.66	+0.8
1,813,325	-		IAI47_08575	0.74	+0.5
1,813,356	+		IAI47_08575	0.77	+1.0
1,813,440	-		IAI47_08575	0.87	-0.4
1,813,440	-		IAI47_08575	0.87	-0.1
1,813,440	-		IAI47_08575	0.87	-1.0
1,813,440	-		IAI47_08575	0.87	+1.1
1,813,440	-		IAI47_08575	0.87	-1.1
1,813,440	-		IAI47_08575	0.87	+2.4
1,813,453	+		IAI47_08575	0.88	+0.1
1,813,454	-		IAI47_08575	0.88	-0.5
1,813,496	-				+1.0
1,813,532	+				+0.7
1,813,533	-				-1.1
1,813,533	-				+0.8
1,813,564	+				+0.6
1,813,564	+				-1.4
1,813,564	+				-1.2
1,813,564	+				+0.5
1,813,564	+				+0.0
1,813,564	+				-1.3
1,813,564	+				-1.1
1,813,564	+				+0.5
1,813,565	-				-1.1
1,813,586	+				-0.6
1,813,587	-				+0.9
1,813,587	-				-0.3
1,813,590	+				+0.1
1,813,590	+				-1.4
1,813,590	+				-0.8
1,813,590	+				+1.1
1,813,590	+				-0.7
1,813,590	+				+0.3
1,813,591	-				+0.6
1,813,591	-				+2.6
1,813,591	-				+0.9
1,813,680	+		IAI47_08580	0.30	+0.2
1,813,681	-		IAI47_08580	0.31	+0.3
1,813,681	-		IAI47_08580	0.31	+1.7
1,813,681	-		IAI47_08580	0.31	+0.2
1,813,681	-		IAI47_08580	0.31	+1.7
1,813,688	-		IAI47_08580	0.33	+1.5
1,813,728	+		IAI47_08580	0.46	-1.2
1,813,729	-		IAI47_08580	0.47	-0.0
1,813,739	+		IAI47_08580	0.50	-0.5
1,813,739	+		IAI47_08580	0.50	+0.3
1,813,740	-		IAI47_08580	0.50	+0.8
1,813,740	-		IAI47_08580	0.50	+1.3
1,813,746	+		IAI47_08580	0.52	-2.6
1,813,747	-		IAI47_08580	0.53	+0.1
1,813,747	-		IAI47_08580	0.53	+0.1
1,813,806	+		IAI47_08580	0.72	+0.3
1,813,807	-		IAI47_08580	0.73	+0.8
1,813,814	+		IAI47_08580	0.75	-0.8
1,813,815	-		IAI47_08580	0.75	+0.3
1,813,815	-		IAI47_08580	0.75	-1.4
1,813,815	-		IAI47_08580	0.75	+1.0
1,813,819	+		IAI47_08580	0.77	-2.1
1,813,837	+		IAI47_08580	0.83	-0.1
1,813,837	+		IAI47_08580	0.83	+5.3
1,813,838	-		IAI47_08580	0.83	+0.3
1,813,839	+		IAI47_08580	0.83	-2.2
1,813,840	-		IAI47_08580	0.84	-1.0
1,813,859	+				+1.8
1,813,860	-				+2.3
1,813,860	-				-0.4
1,813,860	-				+0.6
1,813,871	+				+0.4
1,813,871	+				-0.3
1,813,871	+				+1.6
1,813,871	+				-1.3
1,813,871	+				-1.4
1,813,871	+				-1.6
1,813,872	-				+0.6
1,813,872	-				+2.2
1,813,872	-				+2.0
1,813,872	-				+0.4
1,813,872	-				+2.0
1,813,872	-				+1.8
1,813,872	-				+0.4
1,813,872	-				-0.4
1,813,872	-				+0.7
1,813,872	-				+1.2
1,813,872	-				+0.4
1,813,872	-				-0.4
1,813,872	-				+1.4
1,813,883	+				+0.3
1,813,883	+				-0.9
1,813,884	-				-1.1
1,813,884	-				-0.7
1,813,884	-				+1.5
1,813,884	-				-0.9
1,813,888	+				-1.5
1,813,888	+				+0.0
1,813,888	+				-1.0
1,813,889	-				+0.0
1,813,889	-				+0.1
1,813,903	-				+0.4
1,813,903	-				-0.6
1,813,903	-				+1.6
1,813,911	+				-1.0
1,813,911	+				-0.9
1,813,911	+				-0.7
1,813,912	-				+0.5
1,813,912	-				+2.0
1,813,912	-				+0.5
1,813,912	-				-0.4
1,813,912	-				+0.1
1,813,912	-				+0.4
1,813,912	-				-0.6
1,813,919	+				-1.2
1,813,920	-				+1.4
1,813,926	-				+0.6
1,813,942	+		IAI47_08585	0.13	+0.8
1,813,943	-		IAI47_08585	0.13	+0.7
1,813,943	-		IAI47_08585	0.13	-0.0
1,813,943	-		IAI47_08585	0.13	+3.1
1,813,966	-		IAI47_08585	0.18	+0.7
1,813,969	+		IAI47_08585	0.19	-1.4
1,813,969	+		IAI47_08585	0.19	-1.8
1,813,969	+		IAI47_08585	0.19	-0.2
1,813,978	+		IAI47_08585	0.21	+2.1
1,814,008	-		IAI47_08585	0.27	-0.7
1,814,008	-		IAI47_08585	0.27	+1.5
1,814,017	-		IAI47_08585	0.29	+1.4
1,814,017	-		IAI47_08585	0.29	+1.1
1,814,053	-		IAI47_08585	0.37	+0.3
1,814,062	+		IAI47_08585	0.39	-0.1
1,814,063	-		IAI47_08585	0.39	+1.8
1,814,070	+		IAI47_08585	0.41	-1.5
1,814,118	-		IAI47_08585	0.51	+2.1
1,814,118	-		IAI47_08585	0.51	+1.9
1,814,118	-		IAI47_08585	0.51	+1.2
1,814,129	+		IAI47_08585	0.54	-1.1
1,814,129	+		IAI47_08585	0.54	-2.1
1,814,129	+		IAI47_08585	0.54	-0.8
1,814,129	+		IAI47_08585	0.54	-1.7
1,814,129	+		IAI47_08585	0.54	-1.3
1,814,137	-		IAI47_08585	0.56	+1.3
1,814,156	-		IAI47_08585	0.60	-1.0
1,814,156	-		IAI47_08585	0.60	+0.8
1,814,178	+		IAI47_08585	0.64	-0.5
1,814,178	+		IAI47_08585	0.64	+1.1
1,814,178	+		IAI47_08585	0.64	-1.5
1,814,178	+		IAI47_08585	0.64	-1.3
1,814,179	-		IAI47_08585	0.65	+1.1
1,814,179	-		IAI47_08585	0.65	+1.3
1,814,179	-		IAI47_08585	0.65	+2.0
1,814,203	+		IAI47_08585	0.70	+1.1
1,814,203	+		IAI47_08585	0.70	+0.5
1,814,204	-		IAI47_08585	0.70	+1.4
1,814,204	-		IAI47_08585	0.70	+1.1
1,814,204	-		IAI47_08585	0.70	+0.7
1,814,204	-		IAI47_08585	0.70	+1.1
1,814,204	-		IAI47_08585	0.70	+1.2
1,814,209	+		IAI47_08585	0.71	-0.9
1,814,209	+		IAI47_08585	0.71	-0.2
1,814,209	+		IAI47_08585	0.71	-1.0
1,814,209	+		IAI47_08585	0.71	-0.9
1,814,209	+		IAI47_08585	0.71	-1.9
1,814,209	+		IAI47_08585	0.71	+1.2
1,814,209	+		IAI47_08585	0.71	-0.6
1,814,209	+		IAI47_08585	0.71	-1.6
1,814,210	-		IAI47_08585	0.71	-0.8
1,814,210	-		IAI47_08585	0.71	+1.1
1,814,210	-		IAI47_08585	0.71	+0.8
1,814,214	+		IAI47_08585	0.72	-1.4
1,814,215	-		IAI47_08585	0.73	+0.2
1,814,215	-		IAI47_08585	0.73	+2.4
1,814,230	-		IAI47_08585	0.76	+2.4
1,814,230	-		IAI47_08585	0.76	+1.3
1,814,256	+		IAI47_08585	0.81	-0.8
1,814,268	-		IAI47_08585	0.84	+0.0
1,814,303	+				-2.4
1,814,303	+				-0.8
1,814,304	-				+0.1
1,814,304	-				+2.1
1,814,304	-				+0.8
1,814,304	-				+3.1
1,814,304	-				+1.1
1,814,310	-				+2.2
1,814,310	-				+1.1
1,814,310	-				-0.2
1,814,334	+				-0.6
1,814,334	+				-0.6
1,814,334	+				-1.1
1,814,334	+				-0.7
1,814,334	+				-0.4
1,814,334	+				-2.3
1,814,334	+				-0.1
1,814,335	-				-0.6
1,814,335	-				-0.1
1,814,335	-				+2.5
1,814,335	-				-0.1
1,814,340	+				-1.5
1,814,341	-				+0.8
1,814,341	-				+1.6
1,814,343	+				-2.0
1,814,343	+				-0.2
1,814,344	-				+1.5
1,814,344	-				+1.0
1,814,344	-				-0.6
1,814,351	+				-2.1
1,814,351	+				-0.6
1,814,351	+				-1.4
1,814,352	-				+1.3
1,814,352	-				+1.7
1,814,380	+				-0.1
1,814,385	+				-1.2
1,814,385	+				-0.4
1,814,386	-				+0.6
1,814,406	+				-0.5
1,814,406	+				+0.0
1,814,406	+				-0.2
1,814,407	-				+1.4
1,814,407	-				+2.8
1,814,526	+				-0.6
1,814,527	-				+0.2
1,814,545	+				+1.5
1,814,546	-				+0.3
1,814,546	-				+0.1
1,814,546	-				-0.3
1,814,569	+				+0.6
1,814,569	+				-0.4
1,814,569	+				+0.2
1,814,569	+				+0.8
1,814,569	+				+3.1
1,814,569	+				+0.2
1,814,569	+				-1.6
1,814,570	-				+2.5
1,814,570	-				+1.2
1,814,570	-				+1.3
1,814,570	-				+1.8
1,814,570	-				+0.4
1,814,570	-				-0.3
1,814,573	+				+0.1
1,814,597	+				-0.5
1,814,598	-				-1.2
1,814,598	-				+0.9
1,814,627	+				+0.5
1,814,664	+				-1.1
1,814,665	-				-0.5
1,814,675	+				-0.1
1,814,675	+				+2.2
1,814,675	+				-1.7
1,814,676	-				+1.1
1,814,676	-				+0.9
1,814,676	-				+0.9
1,814,676	-				-0.3
1,814,676	-				+2.0
1,814,708	+				-0.6
1,814,709	-				+0.5
1,814,709	-				-0.3
1,814,709	-				+1.1
1,814,709	-				-0.4
1,814,719	-				-0.5
1,814,743	+				+0.8
1,814,743	+				+0.1
1,814,744	-				-0.1
1,814,744	-				+1.8
1,814,762	+				-1.0
1,814,763	-				+1.4
1,814,763	-				+1.3
1,814,763	-				-0.3
1,814,763	-				-0.1
1,814,766	+		IAI47_08590	0.11	+0.7
1,814,766	+		IAI47_08590	0.11	-0.7
1,814,833	+		IAI47_08590	0.49	-2.4
1,814,834	-		IAI47_08590	0.50	+0.9
1,814,866	+		IAI47_08590	0.68	-2.7
1,814,867	-		IAI47_08590	0.68	-0.3
1,814,906	-				+0.3
1,814,911	-				-0.7
1,814,911	-				-1.4
1,814,914	+				-1.1
1,814,914	+				+0.5
1,814,915	-				-0.2
1,814,931	+				-0.6
1,814,932	-				-0.6
1,814,932	-				-0.2
1,814,941	+				-0.1
1,814,941	+				-1.1
1,814,942	-				+1.7
1,814,942	-				-1.0
1,814,957	+				-1.1
1,814,962	-				+1.8
1,814,983	+				+2.4
1,814,983	+				-0.6
1,814,984	-				+0.5
1,814,984	-				-0.1
1,814,984	-				+0.5
1,814,992	-				+2.1
1,814,992	-				-0.6
1,815,013	+				-1.1
1,815,031	-				+1.4
1,815,047	+				+0.1
1,815,047	+				+2.1
1,815,047	+				+0.1
1,815,047	+				+1.8
1,815,047	+				+0.3
1,815,047	+				+0.7
1,815,047	+				-0.3
1,815,047	+				+0.8
1,815,047	+				+1.1
1,815,047	+				-0.3
1,815,048	-				-0.9
1,815,048	-				-0.2
1,815,048	-				-0.9
1,815,048	-				-0.2
1,815,048	-				+0.1
1,815,048	-				+1.7
1,815,083	+				+0.3
1,815,083	+				-0.2
1,815,084	-				+0.8
1,815,099	-				-0.7
1,815,110	-				+0.8
1,815,110	-				+0.8
1,815,110	-				+0.3
1,815,121	-				+0.9
1,815,121	-				+2.1
1,815,121	-				+0.8
1,815,121	-				-1.1
1,815,209	+				-1.2
1,815,210	-				+0.4
1,815,210	-				+0.2
1,815,279	+		IAI47_08595	0.11	-0.7
1,815,279	+		IAI47_08595	0.11	+1.4
1,815,279	+		IAI47_08595	0.11	-0.2
1,815,279	+		IAI47_08595	0.11	-0.6
1,815,280	-		IAI47_08595	0.11	+0.0
1,815,280	-		IAI47_08595	0.11	-1.4
1,815,280	-		IAI47_08595	0.11	-2.4
1,815,280	-		IAI47_08595	0.11	-1.1
1,815,321	-		IAI47_08595	0.13	-0.3
1,815,340	+		IAI47_08595	0.14	+1.9