Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00938

Experiment: PYE 0.5x 4C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C
1,012,148	+		CCNA_00936	0.40	-1.9
1,012,163	+		CCNA_00936	0.42	-0.6
1,012,201	+		CCNA_00936	0.47	-1.0
1,012,209	-		CCNA_00936	0.47	+1.2
1,012,213	+		CCNA_00936	0.48	-0.3
1,012,220	-		CCNA_00936	0.49	+1.2
1,012,251	+		CCNA_00936	0.53	-1.6
1,012,301	-		CCNA_00936	0.58	+0.0
1,012,317	+		CCNA_00936	0.60	-0.6
1,012,335	+		CCNA_00936	0.62	-0.1
1,012,360	+		CCNA_00936	0.65	+0.3
1,012,404	+		CCNA_00936	0.71	+0.8
1,012,524	+		CCNA_00936	0.85	+0.8
1,012,524	+		CCNA_00936	0.85	+1.6
1,012,529	+		CCNA_00936	0.86	-1.1
1,012,532	-		CCNA_00936	0.86	+0.9
1,012,541	+		CCNA_00936	0.87	-0.4
1,012,549	-		CCNA_00936	0.88	-1.4
1,012,587	-				-0.7
1,012,587	-				-0.3
1,012,599	-				-1.6
1,012,607	+				-1.0
1,012,615	-				-0.2
1,012,617	+				+0.4
1,012,635	-				-0.3
1,012,636	+				-1.2
1,012,636	+				+0.5
1,012,657	+				-2.9
1,012,666	+				+0.2
1,012,667	+				-0.4
1,012,674	-				+1.4
1,012,676	+				+0.3
1,012,689	-		CCNA_00937	0.13	+1.9
1,012,717	-		CCNA_00937	0.23	+0.2
1,012,727	-		CCNA_00937	0.27	-1.0
1,012,727	-		CCNA_00937	0.27	-0.1
1,012,792	+		CCNA_00937	0.51	+1.1
1,012,802	+		CCNA_00937	0.54	-0.8
1,012,841	-		CCNA_00937	0.69	-0.5
1,012,856	+		CCNA_00937	0.74	+0.4
1,012,859	-		CCNA_00937	0.76	+1.8
1,012,884	+		CCNA_00937	0.85	+0.8
1,012,884	+		CCNA_00937	0.85	+0.2
1,012,894	+		CCNA_00937	0.89	-1.2
1,012,894	+		CCNA_00937	0.89	+0.9
1,012,902	-				-0.6
1,012,902	-				-0.5
1,012,902	-				+0.3
1,012,902	-				+0.5
1,012,944	-				+1.2
1,012,944	-				+1.4
1,012,946	+				+0.6
1,012,976	-				+0.2
1,013,040	+				+0.4
1,013,082	-				+0.4
1,013,083	-				+0.5
1,013,092	-				+0.3
1,013,092	-				+0.9
1,013,092	-				+0.6
1,013,116	-				-0.2
1,013,174	+				+1.7
1,013,174	+				-0.1
1,013,177	-				+0.2
1,013,182	-				+0.5
1,013,182	-				+0.2
1,013,257	-		CCNA_00938	0.14	-1.4
1,013,262	+		CCNA_00938	0.15	-0.9
1,013,289	-		CCNA_00938	0.17	-0.6
1,013,289	-		CCNA_00938	0.17	-0.2
1,013,319	-		CCNA_00938	0.20	+0.2
1,013,329	-		CCNA_00938	0.20	+0.6
1,013,347	+		CCNA_00938	0.22	-1.4
1,013,347	+		CCNA_00938	0.22	-0.3
1,013,357	+		CCNA_00938	0.23	-0.3
1,013,365	-		CCNA_00938	0.23	+0.7
1,013,377	-		CCNA_00938	0.24	-2.1
1,013,396	+		CCNA_00938	0.26	-1.8
1,013,396	+		CCNA_00938	0.26	+1.9
1,013,396	+		CCNA_00938	0.26	-0.3
1,013,406	+		CCNA_00938	0.27	+0.3
1,013,414	-		CCNA_00938	0.28	-2.1
1,013,420	-		CCNA_00938	0.28	+1.0
1,013,420	-		CCNA_00938	0.28	-0.0
1,013,442	-		CCNA_00938	0.30	-0.0
1,013,449	-		CCNA_00938	0.31	-1.3
1,013,469	-		CCNA_00938	0.32	-0.3
1,013,488	+		CCNA_00938	0.34	-0.9
1,013,489	+		CCNA_00938	0.34	-0.6
1,013,494	+		CCNA_00938	0.34	-0.7
1,013,497	-		CCNA_00938	0.35	+0.5
1,013,497	-		CCNA_00938	0.35	-2.1
1,013,557	+		CCNA_00938	0.40	-0.6
1,013,565	-		CCNA_00938	0.40	-0.3
1,013,565	-		CCNA_00938	0.40	+0.6
1,013,565	-		CCNA_00938	0.40	+0.1
1,013,565	-		CCNA_00938	0.40	+0.4
1,013,581	+		CCNA_00938	0.42	-0.4
1,013,584	-		CCNA_00938	0.42	-0.0
1,013,600	-		CCNA_00938	0.43	-0.5
1,013,605	-		CCNA_00938	0.44	-0.6
1,013,618	+		CCNA_00938	0.45	-0.0
1,013,672	+		CCNA_00938	0.49	-0.1
1,013,672	+		CCNA_00938	0.49	-0.1
1,013,680	-		CCNA_00938	0.50	-1.5
1,013,680	-		CCNA_00938	0.50	-2.3
1,013,686	+		CCNA_00938	0.51	-0.6
1,013,686	+		CCNA_00938	0.51	-1.4
1,013,694	-		CCNA_00938	0.51	-0.2
1,013,699	+		CCNA_00938	0.52	-0.5
1,013,699	+		CCNA_00938	0.52	-1.3
1,013,707	-		CCNA_00938	0.52	+0.5
1,013,713	-		CCNA_00938	0.53	-0.2
1,013,719	-		CCNA_00938	0.53	+0.2
1,013,719	-		CCNA_00938	0.53	+0.4
1,013,742	+		CCNA_00938	0.55	-2.1
1,013,764	-		CCNA_00938	0.57	+0.4
1,013,769	-				-1.4
1,013,773	+		CCNA_00938	0.58	+0.1
1,013,776	-		CCNA_00938	0.58	-0.1
1,013,781	-		CCNA_00938	0.59	-0.5
1,013,781	-		CCNA_00938	0.59	-1.0
1,013,789	+		CCNA_00938	0.59	+0.8
1,013,797	-		CCNA_00938	0.60	-0.1
1,013,797	-		CCNA_00938	0.60	+0.0
1,013,815	-		CCNA_00938	0.61	-1.9
1,013,817	+		CCNA_00938	0.62	-0.6
1,013,821	-		CCNA_00938	0.62	+0.1
1,013,825	-		CCNA_00938	0.62	+0.5
1,013,856	-		CCNA_00938	0.65	-0.1
1,013,893	+				+0.6
1,013,895	+		CCNA_00938	0.68	+0.3
1,013,907	-		CCNA_00938	0.69	-0.2
1,013,925	-		CCNA_00938	0.71	-0.1
1,013,973	-		CCNA_00938	0.75	-0.5
1,013,986	-		CCNA_00938	0.76	-0.1
1,013,986	-		CCNA_00938	0.76	-0.3
1,014,045	-		CCNA_00938	0.81	-0.7
1,014,052	-		CCNA_00938	0.81	-0.2
1,014,057	-		CCNA_00938	0.82	-0.0
1,014,078	+		CCNA_00938	0.84	-1.4
1,014,084	+		CCNA_00938	0.84	+0.5
1,014,086	-		CCNA_00938	0.84	-0.5
1,014,086	-		CCNA_00938	0.84	+0.2
1,014,103	+		CCNA_00938	0.86	-2.1
1,014,107	+		CCNA_00938	0.86	-0.9
1,014,111	-		CCNA_00938	0.86	-0.5
1,014,122	+		CCNA_00938	0.87	-1.1
1,014,158	+				-0.9
1,014,166	-				-0.3
1,014,166	-				-0.2
1,014,166	-				-0.7
1,014,180	+				-2.7
1,014,189	+				-0.0
1,014,207	-				+0.5
1,014,217	-				-0.0
1,014,266	-				-1.0
1,014,266	-				+0.4
1,014,305	+				-2.7
1,014,314	-				+0.3
1,014,327	+				-1.4
1,014,330	-				-0.4
1,014,330	-				+0.3
1,014,332	+				+0.1
1,014,332	+				-0.4
1,014,332	+				+1.0
1,014,332	+				+0.3
1,014,332	+				+0.3
1,014,332	+				-0.4
1,014,340	-				+0.9
1,014,340	-				+0.7
1,014,340	-				-0.5
1,014,340	-				-3.2
1,014,340	-				-0.1
1,014,344	+				+0.0
1,014,406	+				-0.1
1,014,410	-				+0.4
1,014,493	+				+3.1
1,014,494	+				+1.0
1,014,501	-				+0.4
1,014,502	-				-0.9
1,014,524	+				-0.2
1,014,585	-		CCNA_00939	0.15	-1.1
1,014,596	-		CCNA_00939	0.17	-4.9
1,014,624	+		CCNA_00939	0.23	+0.2
1,014,665	+		CCNA_00939	0.31	+0.5
1,014,723	+		CCNA_00939	0.42	+0.5
1,014,731	-		CCNA_00939	0.44	-0.6
1,014,793	+		CCNA_00939	0.56	-0.0
1,014,793	+		CCNA_00939	0.56	+0.5
1,014,832	+		CCNA_00939	0.64	-0.5
1,014,856	+		CCNA_00939	0.69	-0.8
1,014,877	+		CCNA_00939	0.73	+0.3
1,014,882	+		CCNA_00939	0.74	-0.6
1,014,887	+		CCNA_00939	0.75	-1.4
1,014,895	-		CCNA_00939	0.77	-1.9
1,014,902	+		CCNA_00939	0.78	+0.2
1,014,980	+				+0.7
1,014,980	+				-0.6
1,014,980	+				+1.1
1,015,048	+				+0.6
1,015,048	+				+0.6
1,015,056	-				-3.0
1,015,073	+				+0.5
1,015,081	-				+1.9
1,015,144	+				+0.6
1,015,176	+				-1.5
1,015,236	+				+1.9
1,015,239	-				-0.7
1,015,242	+				-0.7
1,015,244	+				+0.4
1,015,244	-				+0.9
1,015,244	-				+0.5
1,015,244	-				+0.2
1,015,252	-				-3.1
1,015,267	-				+1.9