Experiment: PYE 0.5x 4C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00884 and CCNA_00885 overlap by 11 nucleotides CCNA_00885 and CCNA_00886 are separated by 206 nucleotides CCNA_00886 and CCNA_00887 are separated by 182 nucleotides CCNA_00887 and CCNA_00888 are separated by 124 nucleotides
CCNA_00884: CCNA_00884 - VapC-like PIN domain ribonuclease toxin, at 963,806 to 964,192
_00884
CCNA_00885: CCNA_00885 - MazE-like antitoxin protein, at 964,182 to 964,730
_00885
CCNA_00886: CCNA_00886 - aspartokinase, at 964,937 to 966,184
_00886
CCNA_00887: CCNA_00887 - hypothetical protein, at 966,367 to 966,831
_00887
CCNA_00888: CCNA_00888 - MCP-signal associated domain protein, at 966,956 to 967,309
_00888
Position (kb) 964
965
966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 963.942 kb on + strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.950 kb on - strand, within CCNA_00884 at 963.973 kb on + strand, within CCNA_00884 at 964.042 kb on + strand, within CCNA_00884 at 964.076 kb on - strand, within CCNA_00884 at 964.091 kb on + strand, within CCNA_00884 at 964.099 kb on - strand, within CCNA_00884 at 964.201 kb on - strand at 964.207 kb on - strand at 964.220 kb on - strand at 964.220 kb on - strand at 964.220 kb on - strand at 964.227 kb on + strand at 964.234 kb on + strand at 964.306 kb on - strand, within CCNA_00885 at 964.327 kb on + strand, within CCNA_00885 at 964.329 kb on - strand, within CCNA_00885 at 964.354 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.359 kb on + strand, within CCNA_00885 at 964.378 kb on + strand, within CCNA_00885 at 964.379 kb on - strand, within CCNA_00885 at 964.395 kb on + strand, within CCNA_00885 at 964.398 kb on - strand, within CCNA_00885 at 964.403 kb on - strand, within CCNA_00885 at 964.416 kb on + strand, within CCNA_00885 at 964.423 kb on + strand, within CCNA_00885 at 964.425 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.431 kb on - strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.440 kb on + strand, within CCNA_00885 at 964.443 kb on - strand, within CCNA_00885 at 964.448 kb on - strand, within CCNA_00885 at 964.461 kb on + strand, within CCNA_00885 at 964.475 kb on + strand, within CCNA_00885 at 964.475 kb on + strand, within CCNA_00885 at 964.483 kb on - strand, within CCNA_00885 at 964.485 kb on - strand, within CCNA_00885 at 964.525 kb on + strand, within CCNA_00885 at 964.531 kb on + strand, within CCNA_00885 at 964.533 kb on - strand, within CCNA_00885 at 964.554 kb on - strand, within CCNA_00885 at 964.554 kb on - strand, within CCNA_00885 at 964.561 kb on - strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.577 kb on + strand, within CCNA_00885 at 964.585 kb on - strand, within CCNA_00885 at 964.595 kb on - strand, within CCNA_00885 at 964.605 kb on - strand, within CCNA_00885 at 964.669 kb on - strand, within CCNA_00885 at 964.708 kb on - strand at 964.794 kb on - strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.178 kb on + strand at 966.186 kb on - strand at 966.186 kb on - strand at 966.186 kb on - strand at 966.194 kb on - strand at 966.228 kb on + strand at 966.236 kb on - strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.238 kb on + strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.246 kb on - strand at 966.254 kb on + strand at 966.254 kb on + strand at 966.254 kb on + strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.262 kb on - strand at 966.269 kb on + strand at 966.277 kb on - strand at 966.277 kb on - strand at 966.279 kb on - strand at 966.279 kb on - strand at 966.336 kb on - strand at 966.344 kb on - strand at 966.349 kb on - strand at 966.349 kb on - strand at 966.349 kb on - strand at 966.368 kb on + strand at 966.376 kb on + strand at 966.386 kb on - strand at 966.396 kb on + strand at 966.396 kb on + strand at 966.454 kb on - strand, within CCNA_00887 at 966.466 kb on - strand, within CCNA_00887 at 966.479 kb on + strand, within CCNA_00887 at 966.512 kb on + strand, within CCNA_00887 at 966.532 kb on + strand, within CCNA_00887 at 966.539 kb on - strand, within CCNA_00887 at 966.609 kb on + strand, within CCNA_00887 at 966.635 kb on - strand, within CCNA_00887 at 966.657 kb on + strand, within CCNA_00887 at 966.690 kb on + strand, within CCNA_00887 at 966.698 kb on - strand, within CCNA_00887 at 966.698 kb on - strand, within CCNA_00887 at 966.704 kb on - strand, within CCNA_00887 at 966.726 kb on + strand, within CCNA_00887 at 966.737 kb on + strand, within CCNA_00887 at 966.763 kb on + strand, within CCNA_00887 at 966.853 kb on + strand at 966.853 kb on + strand at 966.853 kb on + strand at 966.854 kb on + strand at 966.861 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.862 kb on - strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.877 kb on + strand at 966.885 kb on - strand at 966.885 kb on - strand at 966.885 kb on - strand at 966.910 kb on + strand at 966.944 kb on - strand at 966.946 kb on + strand at 966.954 kb on - strand at 966.959 kb on + strand at 967.021 kb on - strand, within CCNA_00888 at 967.022 kb on + strand, within CCNA_00888 at 967.022 kb on + strand, within CCNA_00888 at 967.024 kb on + strand, within CCNA_00888 at 967.030 kb on - strand, within CCNA_00888 at 967.032 kb on - strand, within CCNA_00888 at 967.053 kb on + strand, within CCNA_00888 at 967.066 kb on - strand, within CCNA_00888 at 967.101 kb on + strand, within CCNA_00888 at 967.138 kb on + strand, within CCNA_00888 at 967.154 kb on - strand, within CCNA_00888
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C remove 963,942 + CCNA_00884 0.35 -2.1 963,950 - CCNA_00884 0.37 -0.6 963,950 - CCNA_00884 0.37 +0.9 963,950 - CCNA_00884 0.37 +0.7 963,973 + CCNA_00884 0.43 -1.9 964,042 + CCNA_00884 0.61 -1.6 964,076 - CCNA_00884 0.70 -1.3 964,091 + CCNA_00884 0.74 +0.1 964,099 - CCNA_00884 0.76 -0.3 964,201 - +1.9 964,207 - +0.5 964,220 - +0.7 964,220 - +0.9 964,220 - +0.4 964,227 + +0.8 964,234 + -2.5 964,306 - CCNA_00885 0.23 +0.0 964,327 + CCNA_00885 0.26 -2.8 964,329 - CCNA_00885 0.27 -0.4 964,354 + CCNA_00885 0.31 +1.9 964,359 + CCNA_00885 0.32 +0.4 964,359 + CCNA_00885 0.32 -2.6 964,359 + CCNA_00885 0.32 -3.2 964,378 + CCNA_00885 0.36 -3.6 964,379 - CCNA_00885 0.36 +0.8 964,395 + CCNA_00885 0.39 +0.2 964,398 - CCNA_00885 0.39 -0.1 964,403 - CCNA_00885 0.40 -0.2 964,416 + CCNA_00885 0.43 -1.1 964,423 + CCNA_00885 0.44 -2.5 964,425 - CCNA_00885 0.44 +0.3 964,431 - CCNA_00885 0.45 +1.2 964,431 - CCNA_00885 0.45 +0.8 964,431 - CCNA_00885 0.45 +0.6 964,440 + CCNA_00885 0.47 +0.7 964,440 + CCNA_00885 0.47 +0.1 964,440 + CCNA_00885 0.47 -0.3 964,443 - CCNA_00885 0.48 +0.7 964,448 - CCNA_00885 0.48 -1.3 964,461 + CCNA_00885 0.51 -1.6 964,475 + CCNA_00885 0.53 +0.6 964,475 + CCNA_00885 0.53 +0.5 964,483 - CCNA_00885 0.55 +0.2 964,485 - CCNA_00885 0.55 -0.1 964,525 + CCNA_00885 0.62 -0.7 964,531 + CCNA_00885 0.64 +1.3 964,533 - CCNA_00885 0.64 +0.9 964,554 - CCNA_00885 0.68 -1.5 964,554 - CCNA_00885 0.68 +0.1 964,561 - CCNA_00885 0.69 -0.1 964,577 + CCNA_00885 0.72 -2.0 964,577 + CCNA_00885 0.72 +1.9 964,577 + CCNA_00885 0.72 +0.9 964,585 - CCNA_00885 0.73 -0.9 964,595 - CCNA_00885 0.75 +0.0 964,605 - CCNA_00885 0.77 -0.1 964,669 - CCNA_00885 0.89 +0.0 964,708 - +0.3 964,794 - +0.1 966,178 + +0.4 966,178 + +1.2 966,178 + +1.0 966,178 + +0.8 966,178 + +0.7 966,186 - -3.4 966,186 - -2.0 966,186 - -0.9 966,194 - -1.4 966,228 + +0.2 966,236 - -0.8 966,238 + +1.2 966,238 + -0.1 966,238 + +1.3 966,238 + +0.1 966,238 + +1.3 966,238 + +1.2 966,238 + -0.5 966,238 + +0.6 966,238 + +0.6 966,238 + +1.9 966,238 + +0.5 966,238 + +1.0 966,246 - +0.8 966,246 - +0.0 966,246 - -1.0 966,246 - -1.8 966,246 - -1.9 966,246 - +1.0 966,254 + +0.4 966,254 + +0.4 966,254 + +0.2 966,262 - +2.4 966,262 - +0.8 966,262 - +0.9 966,262 - +0.8 966,269 + -0.8 966,277 - -1.0 966,277 - +0.3 966,279 - -0.4 966,279 - +0.4 966,336 - +1.2 966,344 - -2.6 966,349 - +0.6 966,349 - -1.2 966,349 - +0.6 966,368 + +1.0 966,376 + +1.1 966,386 - -1.2 966,396 + +0.6 966,396 + +0.6 966,454 - CCNA_00887 0.19 -0.6 966,466 - CCNA_00887 0.21 -1.3 966,479 + CCNA_00887 0.24 +1.1 966,512 + CCNA_00887 0.31 -0.0 966,532 + CCNA_00887 0.35 -0.2 966,539 - CCNA_00887 0.37 +0.1 966,609 + CCNA_00887 0.52 -1.1 966,635 - CCNA_00887 0.58 +0.9 966,657 + CCNA_00887 0.62 -0.3 966,690 + CCNA_00887 0.69 +0.7 966,698 - CCNA_00887 0.71 -0.5 966,698 - CCNA_00887 0.71 +0.3 966,704 - CCNA_00887 0.72 -0.5 966,726 + CCNA_00887 0.77 +0.2 966,737 + CCNA_00887 0.80 +0.1 966,763 + CCNA_00887 0.85 +0.0 966,853 + +1.1 966,853 + +1.2 966,853 + +0.8 966,854 + +1.6 966,861 - +0.5 966,862 - +0.8 966,862 - -0.0 966,862 - -0.4 966,862 - -2.7 966,862 - +0.7 966,862 - +1.3 966,862 - -3.4 966,862 - +0.6 966,877 + +1.1 966,877 + +1.1 966,877 + +0.2 966,877 + -0.7 966,885 - -0.4 966,885 - -0.1 966,885 - +1.2 966,910 + -1.5 966,944 - -1.6 966,946 + +1.8 966,954 - +0.3 966,959 + -1.1 967,021 - CCNA_00888 0.18 -0.1 967,022 + CCNA_00888 0.19 -0.3 967,022 + CCNA_00888 0.19 -0.5 967,024 + CCNA_00888 0.19 +0.2 967,030 - CCNA_00888 0.21 -0.4 967,032 - CCNA_00888 0.21 -1.5 967,053 + CCNA_00888 0.27 -1.6 967,066 - CCNA_00888 0.31 -2.4 967,101 + CCNA_00888 0.41 +0.1 967,138 + CCNA_00888 0.51 +1.2 967,154 - CCNA_00888 0.56 +0.1
Or see this region's nucleotide sequence