Experiment: PYE 0.5x 4C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00018 and CCNA_00019 are separated by 30 nucleotides CCNA_00019 and CCNA_00020 overlap by 4 nucleotides CCNA_00020 and CCNA_03911 overlap by 4 nucleotides CCNA_03911 and CCNA_00021 are separated by 61 nucleotides
CCNA_00018: CCNA_00018 - molybdenum cofactor biosynthesis protein A, at 18,735 to 19,784
_00018
CCNA_00019: CCNA_00019 - molybdopterin-guanine dinucleotide biosynthesis protein A, at 19,815 to 20,447
_00019
CCNA_00020: CCNA_00020 - hypothetical protein, at 20,444 to 20,668
_00020
CCNA_03911: CCNA_03911 - hypothetical protein, at 20,665 to 20,778
_03911
CCNA_00021: CCNA_00021 - putative aerobic-type carbon monoxide dehydrogenase, large subunit CoxL, at 20,840 to 23,032
_00021
Position (kb) 19
20
21 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 18.910 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.920 kb on - strand, within CCNA_00018 at 18.933 kb on + strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.941 kb on - strand, within CCNA_00018 at 18.989 kb on + strand, within CCNA_00018 at 18.992 kb on - strand, within CCNA_00018 at 18.995 kb on + strand, within CCNA_00018 at 19.064 kb on + strand, within CCNA_00018 at 19.105 kb on + strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.113 kb on - strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.115 kb on + strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.123 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.133 kb on - strand, within CCNA_00018 at 19.143 kb on - strand, within CCNA_00018 at 19.143 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.161 kb on - strand, within CCNA_00018 at 19.163 kb on + strand, within CCNA_00018 at 19.163 kb on + strand, within CCNA_00018 at 19.192 kb on - strand, within CCNA_00018 at 19.200 kb on - strand, within CCNA_00018 at 19.200 kb on - strand, within CCNA_00018 at 19.251 kb on - strand, within CCNA_00018 at 19.315 kb on + strand, within CCNA_00018 at 19.335 kb on - strand, within CCNA_00018 at 19.337 kb on + strand, within CCNA_00018 at 19.340 kb on - strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.342 kb on + strand, within CCNA_00018 at 19.416 kb on + strand, within CCNA_00018 at 19.441 kb on + strand, within CCNA_00018 at 19.444 kb on - strand, within CCNA_00018 at 19.528 kb on + strand, within CCNA_00018 at 19.561 kb on - strand, within CCNA_00018 at 19.578 kb on + strand, within CCNA_00018 at 19.586 kb on + strand, within CCNA_00018 at 19.620 kb on + strand, within CCNA_00018 at 19.640 kb on + strand, within CCNA_00018 at 19.708 kb on - strand at 19.732 kb on - strand at 19.902 kb on + strand, within CCNA_00019 at 19.904 kb on + strand, within CCNA_00019 at 19.910 kb on - strand, within CCNA_00019 at 19.937 kb on + strand, within CCNA_00019 at 19.945 kb on - strand, within CCNA_00019 at 20.000 kb on + strand, within CCNA_00019 at 20.046 kb on + strand, within CCNA_00019 at 20.170 kb on - strand, within CCNA_00019 at 20.200 kb on - strand, within CCNA_00019 at 20.239 kb on + strand, within CCNA_00019 at 20.247 kb on - strand, within CCNA_00019 at 20.247 kb on - strand, within CCNA_00019 at 20.336 kb on - strand, within CCNA_00019 at 20.336 kb on - strand, within CCNA_00019 at 20.340 kb on - strand, within CCNA_00019 at 20.355 kb on + strand, within CCNA_00019 at 20.382 kb on - strand, within CCNA_00019 at 20.434 kb on + strand at 20.450 kb on - strand at 20.574 kb on - strand, within CCNA_00020 at 20.590 kb on - strand, within CCNA_00020 at 20.678 kb on - strand, within CCNA_03911 at 20.694 kb on + strand, within CCNA_03911 at 20.697 kb on - strand, within CCNA_03911 at 20.697 kb on - strand, within CCNA_03911 at 20.738 kb on - strand, within CCNA_03911 at 20.740 kb on + strand, within CCNA_03911 at 20.749 kb on + strand, within CCNA_03911 at 20.749 kb on + strand, within CCNA_03911 at 20.754 kb on + strand, within CCNA_03911 at 20.757 kb on - strand, within CCNA_03911 at 20.863 kb on - strand at 20.875 kb on - strand at 20.880 kb on + strand at 20.989 kb on - strand at 21.008 kb on - strand at 21.043 kb on - strand at 21.069 kb on - strand, within CCNA_00021 at 21.069 kb on - strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.091 kb on + strand, within CCNA_00021 at 21.099 kb on - strand, within CCNA_00021 at 21.108 kb on + strand, within CCNA_00021 at 21.108 kb on + strand, within CCNA_00021 at 21.156 kb on - strand, within CCNA_00021 at 21.201 kb on + strand, within CCNA_00021 at 21.201 kb on + strand, within CCNA_00021 at 21.202 kb on - strand, within CCNA_00021 at 21.208 kb on + strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.209 kb on - strand, within CCNA_00021 at 21.216 kb on - strand, within CCNA_00021 at 21.280 kb on + strand, within CCNA_00021 at 21.286 kb on + strand, within CCNA_00021 at 21.291 kb on + strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.299 kb on - strand, within CCNA_00021 at 21.306 kb on + strand, within CCNA_00021 at 21.306 kb on + strand, within CCNA_00021 at 21.316 kb on - strand, within CCNA_00021 at 21.316 kb on - strand, within CCNA_00021 at 21.369 kb on + strand, within CCNA_00021 at 21.410 kb on + strand, within CCNA_00021
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C remove 18,910 - CCNA_00018 0.17 -2.0 18,920 - CCNA_00018 0.18 -0.1 18,920 - CCNA_00018 0.18 +0.4 18,933 + CCNA_00018 0.19 -0.6 18,941 - CCNA_00018 0.20 -0.2 18,941 - CCNA_00018 0.20 -1.7 18,941 - CCNA_00018 0.20 +0.8 18,989 + CCNA_00018 0.24 -2.7 18,992 - CCNA_00018 0.24 -0.4 18,995 + CCNA_00018 0.25 -1.9 19,064 + CCNA_00018 0.31 -0.5 19,105 + CCNA_00018 0.35 +1.5 19,113 - CCNA_00018 0.36 +0.6 19,113 - CCNA_00018 0.36 -0.7 19,115 + CCNA_00018 0.36 -1.5 19,115 + CCNA_00018 0.36 -1.2 19,123 - CCNA_00018 0.37 +1.5 19,123 - CCNA_00018 0.37 -0.1 19,133 - CCNA_00018 0.38 +0.5 19,133 - CCNA_00018 0.38 -0.1 19,143 - CCNA_00018 0.39 -1.9 19,143 - CCNA_00018 0.39 -0.7 19,161 - CCNA_00018 0.41 +0.5 19,161 - CCNA_00018 0.41 +0.8 19,161 - CCNA_00018 0.41 +2.1 19,163 + CCNA_00018 0.41 -1.0 19,163 + CCNA_00018 0.41 -0.2 19,192 - CCNA_00018 0.44 +0.2 19,200 - CCNA_00018 0.44 -0.8 19,200 - CCNA_00018 0.44 -1.6 19,251 - CCNA_00018 0.49 +0.8 19,315 + CCNA_00018 0.55 -1.5 19,335 - CCNA_00018 0.57 -1.1 19,337 + CCNA_00018 0.57 -0.6 19,340 - CCNA_00018 0.58 -0.5 19,342 + CCNA_00018 0.58 -1.0 19,342 + CCNA_00018 0.58 -3.0 19,342 + CCNA_00018 0.58 +0.3 19,342 + CCNA_00018 0.58 -1.7 19,416 + CCNA_00018 0.65 -1.9 19,441 + CCNA_00018 0.67 -1.3 19,444 - CCNA_00018 0.68 -0.1 19,528 + CCNA_00018 0.76 -2.5 19,561 - CCNA_00018 0.79 -0.1 19,578 + CCNA_00018 0.80 -0.6 19,586 + CCNA_00018 0.81 -0.5 19,620 + CCNA_00018 0.84 -1.6 19,640 + CCNA_00018 0.86 -1.2 19,708 - -0.0 19,732 - -0.9 19,902 + CCNA_00019 0.14 -2.2 19,904 + CCNA_00019 0.14 +0.1 19,910 - CCNA_00019 0.15 -2.5 19,937 + CCNA_00019 0.19 -1.5 19,945 - CCNA_00019 0.21 -1.1 20,000 + CCNA_00019 0.29 -2.0 20,046 + CCNA_00019 0.36 +0.1 20,170 - CCNA_00019 0.56 -1.9 20,200 - CCNA_00019 0.61 +0.8 20,239 + CCNA_00019 0.67 +0.1 20,247 - CCNA_00019 0.68 -1.4 20,247 - CCNA_00019 0.68 -0.4 20,336 - CCNA_00019 0.82 -1.2 20,336 - CCNA_00019 0.82 -0.5 20,340 - CCNA_00019 0.83 -0.5 20,355 + CCNA_00019 0.85 -1.2 20,382 - CCNA_00019 0.90 +0.7 20,434 + -0.5 20,450 - +0.9 20,574 - CCNA_00020 0.58 -3.1 20,590 - CCNA_00020 0.65 -2.8 20,678 - CCNA_03911 0.11 -0.6 20,694 + CCNA_03911 0.25 -0.9 20,697 - CCNA_03911 0.28 -0.6 20,697 - CCNA_03911 0.28 -1.1 20,738 - CCNA_03911 0.64 -2.0 20,740 + CCNA_03911 0.66 -0.6 20,749 + CCNA_03911 0.74 -2.7 20,749 + CCNA_03911 0.74 -2.6 20,754 + CCNA_03911 0.78 -3.1 20,757 - CCNA_03911 0.81 -0.8 20,863 - -0.5 20,875 - -0.9 20,880 + -1.3 20,989 - -0.0 21,008 - -1.5 21,043 - -3.3 21,069 - CCNA_00021 0.10 +0.3 21,069 - CCNA_00021 0.10 +0.6 21,091 + CCNA_00021 0.11 +0.1 21,091 + CCNA_00021 0.11 -2.3 21,091 + CCNA_00021 0.11 -1.3 21,091 + CCNA_00021 0.11 -1.0 21,091 + CCNA_00021 0.11 -0.7 21,091 + CCNA_00021 0.11 -1.1 21,091 + CCNA_00021 0.11 -0.5 21,099 - CCNA_00021 0.12 +1.1 21,108 + CCNA_00021 0.12 -1.7 21,108 + CCNA_00021 0.12 -1.0 21,156 - CCNA_00021 0.14 -0.0 21,201 + CCNA_00021 0.16 +0.4 21,201 + CCNA_00021 0.16 -0.6 21,202 - CCNA_00021 0.17 -1.4 21,208 + CCNA_00021 0.17 -3.8 21,209 - CCNA_00021 0.17 +0.7 21,209 - CCNA_00021 0.17 -1.3 21,209 - CCNA_00021 0.17 -1.0 21,209 - CCNA_00021 0.17 -0.9 21,216 - CCNA_00021 0.17 -3.5 21,280 + CCNA_00021 0.20 -1.2 21,286 + CCNA_00021 0.20 -0.9 21,291 + CCNA_00021 0.21 +1.4 21,299 - CCNA_00021 0.21 -0.8 21,299 - CCNA_00021 0.21 -1.3 21,299 - CCNA_00021 0.21 -0.7 21,299 - CCNA_00021 0.21 -0.3 21,299 - CCNA_00021 0.21 -0.3 21,306 + CCNA_00021 0.21 -0.7 21,306 + CCNA_00021 0.21 -0.4 21,316 - CCNA_00021 0.22 +0.5 21,316 - CCNA_00021 0.22 -0.1 21,369 + CCNA_00021 0.24 +0.9 21,410 + CCNA_00021 0.26 +0.1
Or see this region's nucleotide sequence