Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4503

Experiment: Sucrose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4502 and Psyr_4503 overlap by 4 nucleotidesPsyr_4503 and Psyr_4504 overlap by 4 nucleotidesPsyr_4504 and Psyr_4505 overlap by 4 nucleotides Psyr_4502: Psyr_4502 - carbohydrate ABC transporter substrate-binding protein, CUT1 family, at 5,366,138 to 5,367,457 _4502 Psyr_4503: Psyr_4503 - carbohydrate ABC transporter membrane protein 1, CUT1 family, at 5,367,454 to 5,368,347 _4503 Psyr_4504: Psyr_4504 - carbohydrate ABC transporter membrane protein 2, CUT1 family, at 5,368,344 to 5,369,237 _4504 Psyr_4505: Psyr_4505 - carbohydrate ABC transporter ATP-binding protein, CUT1 family, at 5,369,234 to 5,370,340 _4505 Position (kb) 5367 5368 5369Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5366.492 kb on - strand, within Psyr_4502at 5366.516 kb on + strand, within Psyr_4502at 5366.520 kb on - strand, within Psyr_4502at 5366.579 kb on + strand, within Psyr_4502at 5366.579 kb on + strand, within Psyr_4502at 5366.579 kb on + strand, within Psyr_4502at 5366.580 kb on - strand, within Psyr_4502at 5366.580 kb on - strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.581 kb on + strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.582 kb on - strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.952 kb on + strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.953 kb on - strand, within Psyr_4502at 5366.996 kb on - strand, within Psyr_4502at 5366.999 kb on + strand, within Psyr_4502at 5367.132 kb on + strand, within Psyr_4502at 5367.132 kb on + strand, within Psyr_4502at 5367.133 kb on - strand, within Psyr_4502at 5367.133 kb on - strand, within Psyr_4502at 5367.539 kb on - strandat 5367.625 kb on + strand, within Psyr_4503at 5367.625 kb on + strand, within Psyr_4503at 5367.625 kb on + strand, within Psyr_4503at 5367.626 kb on - strand, within Psyr_4503at 5367.626 kb on - strand, within Psyr_4503at 5367.626 kb on - strand, within Psyr_4503at 5367.626 kb on - strand, within Psyr_4503at 5367.902 kb on - strand, within Psyr_4503at 5367.944 kb on - strand, within Psyr_4503at 5368.012 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.067 kb on + strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.068 kb on - strand, within Psyr_4503at 5368.090 kb on + strand, within Psyr_4503at 5368.090 kb on + strand, within Psyr_4503at 5368.091 kb on - strand, within Psyr_4503at 5368.091 kb on - strand, within Psyr_4503at 5368.183 kb on - strand, within Psyr_4503at 5368.185 kb on + strand, within Psyr_4503at 5368.185 kb on + strand, within Psyr_4503at 5368.185 kb on + strand, within Psyr_4503at 5368.185 kb on + strand, within Psyr_4503at 5368.186 kb on - strand, within Psyr_4503at 5368.186 kb on - strand, within Psyr_4503at 5368.186 kb on - strand, within Psyr_4503at 5368.201 kb on + strand, within Psyr_4503at 5368.201 kb on + strand, within Psyr_4503at 5368.202 kb on - strand, within Psyr_4503at 5368.210 kb on + strand, within Psyr_4503at 5368.211 kb on - strand, within Psyr_4503at 5368.211 kb on - strand, within Psyr_4503at 5368.211 kb on - strand, within Psyr_4503at 5368.211 kb on - strand, within Psyr_4503at 5368.380 kb on + strandat 5368.380 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.425 kb on + strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.426 kb on - strandat 5368.429 kb on + strandat 5368.429 kb on + strandat 5368.429 kb on + strandat 5368.635 kb on + strand, within Psyr_4504at 5368.635 kb on + strand, within Psyr_4504at 5368.635 kb on + strand, within Psyr_4504at 5368.635 kb on + strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.636 kb on - strand, within Psyr_4504at 5368.705 kb on + strand, within Psyr_4504at 5368.722 kb on + strand, within Psyr_4504at 5368.722 kb on + strand, within Psyr_4504at 5368.722 kb on + strand, within Psyr_4504at 5368.722 kb on + strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.723 kb on - strand, within Psyr_4504at 5368.822 kb on - strand, within Psyr_4504at 5368.885 kb on - strand, within Psyr_4504at 5369.031 kb on + strand, within Psyr_4504at 5369.032 kb on - strand, within Psyr_4504at 5369.032 kb on - strand, within Psyr_4504at 5369.032 kb on - strand, within Psyr_4504at 5369.032 kb on - strand, within Psyr_4504at 5369.251 kb on + strandat 5369.251 kb on + strandat 5369.252 kb on - strandat 5369.254 kb on + strandat 5369.254 kb on + strandat 5369.254 kb on + strandat 5369.254 kb on + strandat 5369.255 kb on - strandat 5369.255 kb on - strandat 5369.255 kb on - strandat 5369.272 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sucrose (C)
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5,366,492 - Psyr_4502 0.27 -0.2
5,366,516 + Psyr_4502 0.29 +0.9
5,366,520 - Psyr_4502 0.29 +0.6
5,366,579 + Psyr_4502 0.33 -0.9
5,366,579 + Psyr_4502 0.33 +0.7
5,366,579 + Psyr_4502 0.33 -1.2
5,366,580 - Psyr_4502 0.33 -0.9
5,366,580 - Psyr_4502 0.33 +0.5
5,366,581 + Psyr_4502 0.34 +1.0
5,366,581 + Psyr_4502 0.34 +0.7
5,366,581 + Psyr_4502 0.34 +1.2
5,366,581 + Psyr_4502 0.34 -0.5
5,366,581 + Psyr_4502 0.34 +0.6
5,366,582 - Psyr_4502 0.34 +0.7
5,366,582 - Psyr_4502 0.34 +0.7
5,366,582 - Psyr_4502 0.34 -0.6
5,366,582 - Psyr_4502 0.34 +1.0
5,366,582 - Psyr_4502 0.34 -0.8
5,366,582 - Psyr_4502 0.34 +0.4
5,366,582 - Psyr_4502 0.34 -0.1
5,366,952 + Psyr_4502 0.62 -2.6
5,366,952 + Psyr_4502 0.62 -1.2
5,366,952 + Psyr_4502 0.62 -0.1
5,366,952 + Psyr_4502 0.62 -0.8
5,366,952 + Psyr_4502 0.62 -0.6
5,366,952 + Psyr_4502 0.62 +2.1
5,366,953 - Psyr_4502 0.62 -4.1
5,366,953 - Psyr_4502 0.62 -0.0
5,366,953 - Psyr_4502 0.62 +0.1
5,366,953 - Psyr_4502 0.62 +0.2
5,366,953 - Psyr_4502 0.62 -0.2
5,366,996 - Psyr_4502 0.65 +1.0
5,366,999 + Psyr_4502 0.65 -0.1
5,367,132 + Psyr_4502 0.75 +0.7
5,367,132 + Psyr_4502 0.75 +0.0
5,367,133 - Psyr_4502 0.75 -0.6
5,367,133 - Psyr_4502 0.75 +0.8
5,367,539 - -1.1
5,367,625 + Psyr_4503 0.19 -0.0
5,367,625 + Psyr_4503 0.19 +1.0
5,367,625 + Psyr_4503 0.19 +2.0
5,367,626 - Psyr_4503 0.19 -0.9
5,367,626 - Psyr_4503 0.19 +1.8
5,367,626 - Psyr_4503 0.19 -1.4
5,367,626 - Psyr_4503 0.19 -0.2
5,367,902 - Psyr_4503 0.50 +0.8
5,367,944 - Psyr_4503 0.55 +0.9
5,368,012 + Psyr_4503 0.62 +0.7
5,368,067 + Psyr_4503 0.69 -0.4
5,368,067 + Psyr_4503 0.69 +1.3
5,368,067 + Psyr_4503 0.69 -1.8
5,368,067 + Psyr_4503 0.69 -1.0
5,368,067 + Psyr_4503 0.69 -0.2
5,368,067 + Psyr_4503 0.69 +2.2
5,368,067 + Psyr_4503 0.69 +1.2
5,368,067 + Psyr_4503 0.69 +0.4
5,368,067 + Psyr_4503 0.69 -0.4
5,368,067 + Psyr_4503 0.69 +1.9
5,368,067 + Psyr_4503 0.69 +0.7
5,368,067 + Psyr_4503 0.69 +0.5
5,368,068 - Psyr_4503 0.69 -2.8
5,368,068 - Psyr_4503 0.69 +1.2
5,368,068 - Psyr_4503 0.69 +0.6
5,368,068 - Psyr_4503 0.69 -0.4
5,368,068 - Psyr_4503 0.69 +0.1
5,368,068 - Psyr_4503 0.69 -1.4
5,368,068 - Psyr_4503 0.69 +1.8
5,368,068 - Psyr_4503 0.69 +0.6
5,368,068 - Psyr_4503 0.69 -1.0
5,368,090 + Psyr_4503 0.71 +3.1
5,368,090 + Psyr_4503 0.71 +2.0
5,368,091 - Psyr_4503 0.71 +0.2
5,368,091 - Psyr_4503 0.71 -0.5
5,368,183 - Psyr_4503 0.82 -2.6
5,368,185 + Psyr_4503 0.82 +0.0
5,368,185 + Psyr_4503 0.82 -0.1
5,368,185 + Psyr_4503 0.82 -0.1
5,368,185 + Psyr_4503 0.82 +0.8
5,368,186 - Psyr_4503 0.82 +1.2
5,368,186 - Psyr_4503 0.82 +0.2
5,368,186 - Psyr_4503 0.82 -0.3
5,368,201 + Psyr_4503 0.84 +1.1
5,368,201 + Psyr_4503 0.84 +1.5
5,368,202 - Psyr_4503 0.84 +1.9
5,368,210 + Psyr_4503 0.85 -1.4
5,368,211 - Psyr_4503 0.85 -0.8
5,368,211 - Psyr_4503 0.85 -0.3
5,368,211 - Psyr_4503 0.85 -0.5
5,368,211 - Psyr_4503 0.85 +2.1
5,368,380 + +1.5
5,368,380 + +0.4
5,368,425 + +1.0
5,368,425 + -0.8
5,368,425 + -0.1
5,368,425 + -0.8
5,368,425 + +0.2
5,368,425 + +0.9
5,368,425 + -0.1
5,368,425 + +1.8
5,368,425 + +0.8
5,368,426 - +0.9
5,368,426 - -0.5
5,368,426 - +0.5
5,368,426 - +0.5
5,368,426 - -0.9
5,368,426 - -0.9
5,368,426 - +0.7
5,368,426 - -0.8
5,368,426 - +2.6
5,368,426 - +0.4
5,368,429 + +0.7
5,368,429 + +2.2
5,368,429 + -0.1
5,368,635 + Psyr_4504 0.33 +1.0
5,368,635 + Psyr_4504 0.33 +1.8
5,368,635 + Psyr_4504 0.33 -0.5
5,368,635 + Psyr_4504 0.33 +2.2
5,368,636 - Psyr_4504 0.33 -1.3
5,368,636 - Psyr_4504 0.33 +1.8
5,368,636 - Psyr_4504 0.33 +2.5
5,368,636 - Psyr_4504 0.33 -0.0
5,368,636 - Psyr_4504 0.33 +0.6
5,368,636 - Psyr_4504 0.33 +0.0
5,368,705 + Psyr_4504 0.40 +0.7
5,368,722 + Psyr_4504 0.42 -1.8
5,368,722 + Psyr_4504 0.42 +1.5
5,368,722 + Psyr_4504 0.42 -0.2
5,368,722 + Psyr_4504 0.42 -0.2
5,368,723 - Psyr_4504 0.42 -0.2
5,368,723 - Psyr_4504 0.42 -0.1
5,368,723 - Psyr_4504 0.42 +0.4
5,368,723 - Psyr_4504 0.42 +0.8
5,368,723 - Psyr_4504 0.42 -1.9
5,368,822 - Psyr_4504 0.53 +0.4
5,368,885 - Psyr_4504 0.61 -0.8
5,369,031 + Psyr_4504 0.77 +1.3
5,369,032 - Psyr_4504 0.77 +0.1
5,369,032 - Psyr_4504 0.77 +1.8
5,369,032 - Psyr_4504 0.77 -0.8
5,369,032 - Psyr_4504 0.77 +1.1
5,369,251 + -0.9
5,369,251 + -0.8
5,369,252 - +1.8
5,369,254 + +2.9
5,369,254 + -0.3
5,369,254 + +0.6
5,369,254 + +1.3
5,369,255 - -1.2
5,369,255 - -3.3
5,369,255 - -1.3
5,369,272 + +1.8

Or see this region's nucleotide sequence