Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0790 and Psyr_0791 are separated by 216 nucleotides Psyr_0791 and Psyr_0792 overlap by 4 nucleotides Psyr_0792 and Psyr_0793 are separated by 90 nucleotides
Psyr_0790: Psyr_0790 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase, at 897,200 to 898,498
_0790
Psyr_0791: Psyr_0791 - MOSC, at 898,715 to 899,248
_0791
Psyr_0792: Psyr_0792 - conserved hypothetical protein, at 899,245 to 899,874
_0792
Psyr_0793: Psyr_0793 - conserved hypothetical protein, at 899,965 to 900,462
_0793
Position (kb) 898
899
900 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 897.909 kb on + strand, within Psyr_0790 at 898.035 kb on + strand, within Psyr_0790 at 898.035 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.305 kb on + strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.306 kb on - strand, within Psyr_0790 at 898.323 kb on + strand, within Psyr_0790 at 898.324 kb on - strand, within Psyr_0790 at 898.324 kb on - strand, within Psyr_0790 at 898.372 kb on + strand at 898.372 kb on + strand at 898.373 kb on - strand at 898.373 kb on - strand at 898.480 kb on + strand at 898.486 kb on + strand at 898.486 kb on + strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.487 kb on - strand at 898.505 kb on + strand at 898.506 kb on - strand at 898.565 kb on + strand at 898.565 kb on + strand at 898.584 kb on - strand at 898.655 kb on + strand at 898.656 kb on - strand at 898.656 kb on - strand at 898.704 kb on + strand at 898.805 kb on + strand, within Psyr_0791 at 898.806 kb on - strand, within Psyr_0791 at 899.248 kb on + strand at 899.248 kb on + strand at 899.248 kb on + strand at 899.248 kb on + strand at 899.249 kb on - strand at 899.249 kb on - strand at 899.384 kb on + strand, within Psyr_0792 at 899.385 kb on - strand, within Psyr_0792 at 899.575 kb on + strand, within Psyr_0792 at 899.576 kb on - strand, within Psyr_0792 at 899.576 kb on - strand, within Psyr_0792 at 899.638 kb on - strand, within Psyr_0792 at 899.737 kb on - strand, within Psyr_0792 at 899.858 kb on + strand at 899.858 kb on + strand at 899.886 kb on + strand at 899.886 kb on + strand at 899.929 kb on + strand at 899.929 kb on + strand at 899.929 kb on + strand at 899.929 kb on + strand at 899.929 kb on + strand at 899.930 kb on - strand at 899.930 kb on - strand at 899.962 kb on + strand at 899.986 kb on - strand at 900.100 kb on + strand, within Psyr_0793 at 900.112 kb on + strand, within Psyr_0793 at 900.112 kb on + strand, within Psyr_0793 at 900.112 kb on + strand, within Psyr_0793 at 900.112 kb on + strand, within Psyr_0793 at 900.113 kb on - strand, within Psyr_0793
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 897,909 + Psyr_0790 0.55 +0.9 898,035 + Psyr_0790 0.64 +2.3 898,035 + Psyr_0790 0.64 +0.9 898,305 + Psyr_0790 0.85 +1.8 898,305 + Psyr_0790 0.85 +1.5 898,305 + Psyr_0790 0.85 +1.4 898,305 + Psyr_0790 0.85 +1.7 898,306 - Psyr_0790 0.85 -0.6 898,306 - Psyr_0790 0.85 +1.6 898,306 - Psyr_0790 0.85 -0.5 898,306 - Psyr_0790 0.85 +0.5 898,306 - Psyr_0790 0.85 -0.5 898,306 - Psyr_0790 0.85 +0.4 898,323 + Psyr_0790 0.86 -0.8 898,324 - Psyr_0790 0.87 -1.8 898,324 - Psyr_0790 0.87 -1.5 898,372 + +1.6 898,372 + +0.8 898,373 - +1.2 898,373 - -0.2 898,480 + +2.1 898,486 + +0.0 898,486 + +1.4 898,487 - +2.2 898,487 - -0.2 898,487 - +0.2 898,487 - +0.9 898,505 + +0.2 898,506 - -0.2 898,565 + +1.9 898,565 + +0.2 898,584 - -1.4 898,655 + -0.5 898,656 - +0.5 898,656 - +0.8 898,704 + +0.3 898,805 + Psyr_0791 0.17 -0.6 898,806 - Psyr_0791 0.17 +0.8 899,248 + +0.9 899,248 + +0.2 899,248 + -1.5 899,248 + +1.5 899,249 - +1.2 899,249 - +0.3 899,384 + Psyr_0792 0.22 -1.3 899,385 - Psyr_0792 0.22 +0.2 899,575 + Psyr_0792 0.52 +3.2 899,576 - Psyr_0792 0.53 +2.9 899,576 - Psyr_0792 0.53 +0.8 899,638 - Psyr_0792 0.62 +0.2 899,737 - Psyr_0792 0.78 +0.7 899,858 + +1.9 899,858 + +1.6 899,886 + -1.4 899,886 + +0.2 899,929 + -0.1 899,929 + -2.4 899,929 + +0.1 899,929 + -0.8 899,929 + +0.2 899,930 - +1.9 899,930 - +1.5 899,962 + -1.5 899,986 - +1.8 900,100 + Psyr_0793 0.27 -1.8 900,112 + Psyr_0793 0.30 +0.4 900,112 + Psyr_0793 0.30 +0.9 900,112 + Psyr_0793 0.30 +0.2 900,112 + Psyr_0793 0.30 +0.2 900,113 - Psyr_0793 0.30 -0.8
Or see this region's nucleotide sequence