Experiment: Sucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0351 and Psyr_0352 are separated by 384 nucleotides Psyr_0352 and Psyr_0353 overlap by 1 nucleotides
Psyr_0351: Psyr_0351 - NLPA lipoprotein, at 375,218 to 376,006
_0351
Psyr_0352: Psyr_0352 - monooxygenase, DszA family, at 376,391 to 377,749
_0352
Psyr_0353: Psyr_0353 - Acyl-CoA dehydrogenase, C-terminal, at 377,749 to 378,954
_0353
Position (kb) 376
377
378 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.432 kb on + strand, within Psyr_0351 at 375.433 kb on - strand, within Psyr_0351 at 375.468 kb on + strand, within Psyr_0351 at 375.646 kb on + strand, within Psyr_0351 at 375.646 kb on + strand, within Psyr_0351 at 375.647 kb on - strand, within Psyr_0351 at 375.678 kb on + strand, within Psyr_0351 at 375.678 kb on + strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.679 kb on - strand, within Psyr_0351 at 375.690 kb on + strand, within Psyr_0351 at 375.786 kb on + strand, within Psyr_0351 at 375.786 kb on + strand, within Psyr_0351 at 375.787 kb on - strand, within Psyr_0351 at 375.787 kb on - strand, within Psyr_0351 at 376.057 kb on - strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.078 kb on + strand at 376.079 kb on - strand at 376.079 kb on - strand at 376.079 kb on - strand at 376.123 kb on + strand at 376.123 kb on + strand at 376.123 kb on + strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.124 kb on - strand at 376.182 kb on + strand at 376.182 kb on + strand at 376.182 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.259 kb on + strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.260 kb on - strand at 376.304 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.396 kb on + strand at 376.397 kb on - strand at 376.494 kb on + strand at 376.494 kb on + strand at 376.494 kb on + strand at 376.494 kb on + strand at 376.494 kb on + strand at 376.495 kb on - strand at 376.545 kb on + strand, within Psyr_0352 at 376.546 kb on - strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.656 kb on + strand, within Psyr_0352 at 376.657 kb on - strand, within Psyr_0352 at 376.657 kb on - strand, within Psyr_0352 at 376.657 kb on - strand, within Psyr_0352 at 376.657 kb on - strand, within Psyr_0352 at 376.756 kb on - strand, within Psyr_0352 at 377.130 kb on + strand, within Psyr_0352 at 377.178 kb on + strand, within Psyr_0352 at 377.179 kb on - strand, within Psyr_0352 at 377.179 kb on - strand, within Psyr_0352 at 377.241 kb on + strand, within Psyr_0352 at 377.241 kb on + strand, within Psyr_0352 at 377.241 kb on + strand, within Psyr_0352 at 377.241 kb on + strand, within Psyr_0352 at 377.242 kb on - strand, within Psyr_0352 at 377.242 kb on - strand, within Psyr_0352 at 377.242 kb on - strand, within Psyr_0352 at 377.242 kb on - strand, within Psyr_0352 at 377.242 kb on - strand, within Psyr_0352 at 377.242 kb on - strand, within Psyr_0352 at 377.409 kb on + strand, within Psyr_0352 at 377.410 kb on - strand, within Psyr_0352 at 377.421 kb on + strand, within Psyr_0352 at 377.422 kb on - strand, within Psyr_0352 at 377.422 kb on - strand, within Psyr_0352 at 377.507 kb on + strand, within Psyr_0352 at 377.550 kb on + strand, within Psyr_0352 at 377.559 kb on + strand, within Psyr_0352 at 377.559 kb on + strand, within Psyr_0352 at 377.559 kb on + strand, within Psyr_0352 at 377.559 kb on + strand, within Psyr_0352 at 377.560 kb on - strand, within Psyr_0352 at 377.560 kb on - strand, within Psyr_0352 at 377.560 kb on - strand, within Psyr_0352 at 377.635 kb on - strand at 377.775 kb on + strand at 377.789 kb on + strand at 377.789 kb on + strand at 377.789 kb on + strand at 377.790 kb on - strand at 377.790 kb on - strand at 377.792 kb on + strand at 377.792 kb on + strand at 377.792 kb on + strand at 377.792 kb on + strand at 377.792 kb on + strand at 377.792 kb on + strand at 377.792 kb on + strand at 377.792 kb on + strand at 377.793 kb on - strand at 377.793 kb on - strand at 377.793 kb on - strand at 377.793 kb on - strand at 377.793 kb on - strand at 377.793 kb on - strand at 377.839 kb on - strand at 377.839 kb on - strand at 377.839 kb on - strand at 377.839 kb on - strand at 377.839 kb on - strand at 377.839 kb on - strand at 378.253 kb on - strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.302 kb on + strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.303 kb on - strand, within Psyr_0353 at 378.447 kb on + strand, within Psyr_0353 at 378.447 kb on + strand, within Psyr_0353 at 378.448 kb on - strand, within Psyr_0353 at 378.458 kb on + strand, within Psyr_0353 at 378.459 kb on - strand, within Psyr_0353 at 378.459 kb on - strand, within Psyr_0353 at 378.583 kb on + strand, within Psyr_0353 at 378.606 kb on - strand, within Psyr_0353
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose (C) remove 375,432 + Psyr_0351 0.27 +0.5 375,432 + Psyr_0351 0.27 +0.3 375,432 + Psyr_0351 0.27 +1.1 375,432 + Psyr_0351 0.27 +0.0 375,433 - Psyr_0351 0.27 +1.0 375,468 + Psyr_0351 0.32 -0.9 375,646 + Psyr_0351 0.54 +0.9 375,646 + Psyr_0351 0.54 +1.3 375,647 - Psyr_0351 0.54 +0.3 375,678 + Psyr_0351 0.58 +0.3 375,678 + Psyr_0351 0.58 +0.7 375,679 - Psyr_0351 0.58 +1.2 375,679 - Psyr_0351 0.58 -0.4 375,679 - Psyr_0351 0.58 +0.9 375,679 - Psyr_0351 0.58 +0.8 375,679 - Psyr_0351 0.58 +0.3 375,690 + Psyr_0351 0.60 +0.3 375,786 + Psyr_0351 0.72 +0.3 375,786 + Psyr_0351 0.72 +1.2 375,787 - Psyr_0351 0.72 +3.7 375,787 - Psyr_0351 0.72 -2.3 376,057 - +0.0 376,078 + -0.1 376,078 + +0.1 376,078 + +0.6 376,078 + -0.3 376,078 + +0.0 376,079 - +0.0 376,079 - +0.3 376,079 - +1.3 376,123 + +1.5 376,123 + -0.3 376,123 + +0.9 376,124 - +0.9 376,124 - -1.8 376,124 - +1.3 376,124 - -0.7 376,124 - -1.3 376,182 + -1.3 376,182 + +0.3 376,182 + -4.0 376,259 + +0.6 376,259 + +2.0 376,259 + -3.1 376,259 + -1.3 376,259 + -0.7 376,259 + +1.2 376,259 + +0.3 376,259 + +0.5 376,259 + +1.1 376,259 + +1.2 376,259 + +0.6 376,259 + -0.7 376,260 - -3.0 376,260 - +0.7 376,260 - +0.3 376,260 - +1.6 376,260 - +0.7 376,260 - +1.7 376,260 - -0.7 376,260 - -2.5 376,260 - +2.3 376,304 + -1.0 376,396 + -1.1 376,396 + +0.7 376,396 + +0.9 376,396 + -2.3 376,396 + -0.8 376,396 + -0.7 376,396 + -0.6 376,396 + -2.0 376,397 - +0.8 376,494 + -0.2 376,494 + -0.5 376,494 + +0.3 376,494 + +0.1 376,494 + +1.1 376,495 - -0.5 376,545 + Psyr_0352 0.11 +1.4 376,546 - Psyr_0352 0.11 -0.7 376,656 + Psyr_0352 0.19 +0.8 376,656 + Psyr_0352 0.19 -2.7 376,656 + Psyr_0352 0.19 -0.7 376,656 + Psyr_0352 0.19 +0.4 376,656 + Psyr_0352 0.19 -0.7 376,656 + Psyr_0352 0.19 +0.5 376,657 - Psyr_0352 0.20 -0.9 376,657 - Psyr_0352 0.20 +0.6 376,657 - Psyr_0352 0.20 -0.4 376,657 - Psyr_0352 0.20 -1.1 376,756 - Psyr_0352 0.27 +1.5 377,130 + Psyr_0352 0.54 -1.4 377,178 + Psyr_0352 0.58 +0.7 377,179 - Psyr_0352 0.58 +0.9 377,179 - Psyr_0352 0.58 -1.0 377,241 + Psyr_0352 0.63 -0.7 377,241 + Psyr_0352 0.63 +0.7 377,241 + Psyr_0352 0.63 +0.8 377,241 + Psyr_0352 0.63 +1.3 377,242 - Psyr_0352 0.63 +0.1 377,242 - Psyr_0352 0.63 +1.8 377,242 - Psyr_0352 0.63 -0.3 377,242 - Psyr_0352 0.63 -2.0 377,242 - Psyr_0352 0.63 -1.3 377,242 - Psyr_0352 0.63 +1.3 377,409 + Psyr_0352 0.75 +4.1 377,410 - Psyr_0352 0.75 +0.8 377,421 + Psyr_0352 0.76 +1.8 377,422 - Psyr_0352 0.76 -0.5 377,422 - Psyr_0352 0.76 +0.7 377,507 + Psyr_0352 0.82 +2.4 377,550 + Psyr_0352 0.85 +1.1 377,559 + Psyr_0352 0.86 -0.1 377,559 + Psyr_0352 0.86 +2.0 377,559 + Psyr_0352 0.86 -1.7 377,559 + Psyr_0352 0.86 +1.0 377,560 - Psyr_0352 0.86 -1.3 377,560 - Psyr_0352 0.86 +0.0 377,560 - Psyr_0352 0.86 -0.5 377,635 - +0.6 377,775 + +1.2 377,789 + -0.0 377,789 + -0.4 377,789 + +0.7 377,790 - -1.4 377,790 - +0.8 377,792 + +1.1 377,792 + +1.0 377,792 + +1.3 377,792 + -1.7 377,792 + +1.3 377,792 + -0.3 377,792 + +0.5 377,792 + +1.6 377,793 - +0.2 377,793 - -0.3 377,793 - -1.7 377,793 - +0.0 377,793 - -0.4 377,793 - -0.1 377,839 - -0.8 377,839 - -0.6 377,839 - -3.6 377,839 - +0.5 377,839 - +0.5 377,839 - +1.5 378,253 - Psyr_0353 0.42 -0.8 378,302 + Psyr_0353 0.46 -1.5 378,302 + Psyr_0353 0.46 +0.6 378,302 + Psyr_0353 0.46 -0.9 378,302 + Psyr_0353 0.46 +0.7 378,302 + Psyr_0353 0.46 -0.5 378,302 + Psyr_0353 0.46 +0.2 378,302 + Psyr_0353 0.46 +1.3 378,302 + Psyr_0353 0.46 -0.2 378,302 + Psyr_0353 0.46 -0.3 378,302 + Psyr_0353 0.46 -0.9 378,302 + Psyr_0353 0.46 -0.4 378,302 + Psyr_0353 0.46 -2.5 378,302 + Psyr_0353 0.46 -2.0 378,302 + Psyr_0353 0.46 +0.3 378,302 + Psyr_0353 0.46 +1.5 378,302 + Psyr_0353 0.46 +0.4 378,302 + Psyr_0353 0.46 +1.0 378,303 - Psyr_0353 0.46 +1.7 378,303 - Psyr_0353 0.46 +2.5 378,303 - Psyr_0353 0.46 +1.2 378,303 - Psyr_0353 0.46 -1.3 378,303 - Psyr_0353 0.46 +0.3 378,303 - Psyr_0353 0.46 +0.7 378,303 - Psyr_0353 0.46 +0.5 378,303 - Psyr_0353 0.46 -0.8 378,303 - Psyr_0353 0.46 -0.8 378,303 - Psyr_0353 0.46 -1.0 378,303 - Psyr_0353 0.46 -0.4 378,303 - Psyr_0353 0.46 -1.1 378,303 - Psyr_0353 0.46 -0.5 378,303 - Psyr_0353 0.46 +0.7 378,447 + Psyr_0353 0.58 +1.3 378,447 + Psyr_0353 0.58 -0.7 378,448 - Psyr_0353 0.58 -1.0 378,458 + Psyr_0353 0.59 +1.8 378,459 - Psyr_0353 0.59 -0.3 378,459 - Psyr_0353 0.59 +0.1 378,583 + Psyr_0353 0.69 +1.9 378,606 - Psyr_0353 0.71 +0.1
Or see this region's nucleotide sequence