Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0104

Experiment: Sucrose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Sucrose (C)
114,717	+		Psyr_0103	0.54	+2.4
114,717	+		Psyr_0103	0.54	+0.7
114,717	+		Psyr_0103	0.54	+0.0
114,718	-		Psyr_0103	0.54	+1.0
114,718	-		Psyr_0103	0.54	-0.6
114,718	-		Psyr_0103	0.54	-0.1
114,718	-		Psyr_0103	0.54	+0.3
114,718	-		Psyr_0103	0.54	+1.6
114,757	+		Psyr_0103	0.64	+1.6
114,774	-		Psyr_0103	0.69	+0.4
114,808	+		Psyr_0103	0.78	+0.2
114,808	+		Psyr_0103	0.78	+0.3
114,809	-		Psyr_0103	0.78	+0.2
114,909	-				+0.7
114,935	+				+1.6
114,992	+				+1.3
114,993	-				-1.3
114,996	-				-0.3
115,014	+				+1.0
115,015	-				+0.7
115,015	-				+0.5
115,015	-				-0.3
115,015	-				-3.6
115,015	-				-2.3
115,065	+				-0.7
115,066	-				-0.3
115,071	+				-0.3
115,071	+				-0.7
115,071	+				-1.4
115,072	-				+0.5
115,072	-				-3.1
115,072	-				+0.8
115,072	-				-1.3
115,072	-				+1.4
115,072	-				-2.5
115,072	-				+0.3
115,072	-				+1.0
115,072	-				+0.3
115,080	+				-0.4
115,081	-				-0.1
115,150	+				+1.7
115,168	+				+1.2
115,168	+				+0.9
115,169	-				-1.1
115,169	-				+0.7
115,204	+				+1.6
115,204	+				+1.0
115,240	+				-1.8
115,241	-				+0.2
115,241	-				-0.3
115,273	-				-1.7
115,321	+				-1.3
115,322	-				+0.0
115,322	-				+0.7
115,353	+				-0.7
115,353	+				+0.7
115,354	-				-1.3
115,354	-				-0.8
115,371	-				+3.0
115,382	+				+0.2
115,382	+				-0.7
115,383	-				-0.7
115,383	-				-0.7
115,383	-				+1.1
115,418	-				+0.3
115,418	-				+0.1
115,570	+				+1.4
115,570	+				-1.7
115,571	-				+0.3
115,585	+				+0.7
115,586	-				+0.4
115,622	+				+1.3
115,622	+				-0.5
115,622	+				+0.8
115,622	+				+0.3
115,622	+				-0.8
115,622	+				-1.7
115,622	+				-0.3
115,622	+				+0.9
115,623	-				-1.3
115,623	-				+3.4
115,623	-				+0.3
115,623	-				+1.0
115,623	-				+0.2
115,623	-				+0.3
115,623	-				+1.0
115,623	-				-0.7
115,654	-				-1.1
115,727	-				+0.7
115,737	+				-1.4
115,737	+				+2.5
115,770	+				+2.9
115,770	+				-1.0
115,771	-				+0.9
115,771	-				+0.7
115,771	-				-2.0
115,786	+				+1.2
115,786	+				-2.6
115,787	-				+0.4
115,787	-				+0.3
115,787	-				+2.3
115,787	-				+0.2
115,787	-				+0.1
115,787	-				+2.3
115,885	+		Psyr_0104	0.15	+1.6
115,886	-		Psyr_0104	0.15	-1.0
115,898	+		Psyr_0104	0.16	+0.3
115,904	+		Psyr_0104	0.16	-1.5
115,905	-		Psyr_0104	0.17	-0.0
115,954	+		Psyr_0104	0.21	-0.7
115,989	+		Psyr_0104	0.24	+3.3
115,989	+		Psyr_0104	0.24	-0.0
115,989	+		Psyr_0104	0.24	-3.1
115,989	+		Psyr_0104	0.24	+0.1
115,990	-		Psyr_0104	0.24	+1.2
115,990	-		Psyr_0104	0.24	-1.5
115,990	-		Psyr_0104	0.24	-1.2
116,003	-		Psyr_0104	0.25	-1.4
116,005	+		Psyr_0104	0.25	-1.3
116,027	+		Psyr_0104	0.27	+1.1
116,028	-		Psyr_0104	0.27	+0.5
116,033	+		Psyr_0104	0.28	+0.7
116,033	+		Psyr_0104	0.28	-0.3
116,036	-		Psyr_0104	0.28	-0.5
116,036	-		Psyr_0104	0.28	+3.7
116,053	-		Psyr_0104	0.29	+0.9
116,108	-		Psyr_0104	0.34	-0.5
116,108	-		Psyr_0104	0.34	-1.3
116,216	+		Psyr_0104	0.43	-0.9
116,219	+		Psyr_0104	0.44	+0.6
116,305	+		Psyr_0104	0.51	-1.3
116,306	-		Psyr_0104	0.51	+1.3
116,322	-		Psyr_0104	0.52	-1.7
116,354	-		Psyr_0104	0.55	-0.7
116,373	+		Psyr_0104	0.57	+0.1
116,373	+		Psyr_0104	0.57	-0.6
116,374	-		Psyr_0104	0.57	-0.7
116,377	+		Psyr_0104	0.57	-0.6
116,377	+		Psyr_0104	0.57	+0.2
116,377	+		Psyr_0104	0.57	-0.3
116,377	+		Psyr_0104	0.57	+1.3
116,377	+		Psyr_0104	0.57	-1.7
116,377	+		Psyr_0104	0.57	-2.5
116,377	+		Psyr_0104	0.57	+0.5
116,377	+		Psyr_0104	0.57	-0.7
116,377	+		Psyr_0104	0.57	-1.0
116,377	+		Psyr_0104	0.57	+0.6
116,377	+		Psyr_0104	0.57	-1.7
116,377	+		Psyr_0104	0.57	+0.2
116,378	-		Psyr_0104	0.57	+0.3
116,378	-		Psyr_0104	0.57	+1.4
116,378	-		Psyr_0104	0.57	-2.0
116,378	-		Psyr_0104	0.57	+0.3
116,378	-		Psyr_0104	0.57	+1.2
116,378	-		Psyr_0104	0.57	+0.5
116,384	-		Psyr_0104	0.58	+0.3
116,384	-		Psyr_0104	0.58	+0.3
116,413	+		Psyr_0104	0.60	+0.7
116,413	+		Psyr_0104	0.60	-1.2
116,414	-		Psyr_0104	0.60	-1.7
116,453	+		Psyr_0104	0.64	+0.1
116,453	+		Psyr_0104	0.64	-0.7
116,530	+		Psyr_0104	0.70	+0.5
116,575	+		Psyr_0104	0.74	+0.9
116,619	+		Psyr_0104	0.78	-1.7
116,620	-		Psyr_0104	0.78	-3.1
116,620	-		Psyr_0104	0.78	+0.6
116,620	-		Psyr_0104	0.78	-0.2
116,741	-		Psyr_0104	0.89	+0.5
116,752	-		Psyr_0104	0.89	-0.7
116,766	+				-0.9
116,767	-				-0.7
116,803	-				+1.0
116,803	-				-0.7
116,821	+				+0.9
116,844	+				-0.1
116,844	+				-0.5
116,844	+				+1.7
116,844	+				+0.8
116,845	-				-1.3
116,861	-				-1.3
116,871	+				-0.6
116,896	+				-0.3
116,896	+				-0.7
116,896	+				-1.8
116,896	+				-1.1
116,896	+				+0.3
116,897	-				+0.5
116,897	-				+0.3
116,897	-				+3.7
116,897	-				-2.8
116,897	-				+1.6
116,908	+				-0.2
116,908	+				+0.3
116,908	+				+1.0
116,908	+				-0.5
116,908	+				+0.9
116,908	+				+0.3
116,908	+				+0.6
116,908	+				+1.3
116,908	+				+1.3
116,908	+				+1.7
116,908	+				-1.3
116,908	+				+0.2
116,909	-				-0.3
116,909	-				-1.8
116,909	-				+2.1
116,909	-				+0.1
116,909	-				+0.7
116,909	-				-0.1
116,909	-				+0.2
116,909	-				+1.1
116,909	-				+1.7
116,909	-				+0.3
116,909	-				-3.1
116,909	-				-0.3
116,909	-				-2.3
116,909	-				+1.7
116,909	-				+0.4
116,909	-				+1.5
116,909	-				-0.4
116,909	-				-1.3
116,909	-				+1.8
116,909	-				-2.5
116,909	-				+0.3
116,909	-				+2.5
116,909	-				-0.4
116,909	-				-1.7
116,930	+				-1.6
116,930	+				+0.7
116,931	-				-1.1
116,931	-				+0.8
116,931	-				+0.3
116,932	+				+0.3
116,933	-				+0.3
116,933	-				-0.4
116,933	-				+0.9
116,933	-				-2.5
116,933	-				+1.4