Experiment: Chromium(III) Chloride Hexahydrate 0.000390625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_965 and Pf6N2E2_966 are separated by 106 nucleotides Pf6N2E2_966 and Pf6N2E2_967 are separated by 53 nucleotides Pf6N2E2_967 and Pf6N2E2_968 are separated by 100 nucleotides Pf6N2E2_968 and Pf6N2E2_969 are separated by 69 nucleotides
Pf6N2E2_965 - PilL protein, at 1,135,400 to 1,135,942
_965
Pf6N2E2_966 - FIG00964711: hypothetical protein, at 1,136,049 to 1,136,795
_966
Pf6N2E2_967 - DNA repair protein RadC, at 1,136,849 to 1,137,343
_967
Pf6N2E2_968 - FIG00962395: hypothetical protein, at 1,137,444 to 1,137,701
_968
Pf6N2E2_969 - Putative uncharacterized protein STY4534 (Putative uncharacterized protein), at 1,137,771 to 1,138,352
_969
Position (kb)
1136
1137
1138 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1135.862 kb on - strand, within Pf6N2E2_965 at 1136.050 kb on + strand at 1136.051 kb on - strand at 1136.135 kb on - strand, within Pf6N2E2_966 at 1136.135 kb on - strand, within Pf6N2E2_966 at 1136.135 kb on - strand, within Pf6N2E2_966 at 1136.135 kb on - strand, within Pf6N2E2_966 at 1136.135 kb on - strand, within Pf6N2E2_966 at 1136.139 kb on + strand, within Pf6N2E2_966 at 1136.140 kb on - strand, within Pf6N2E2_966 at 1136.140 kb on - strand, within Pf6N2E2_966 at 1136.140 kb on - strand, within Pf6N2E2_966 at 1136.255 kb on + strand, within Pf6N2E2_966 at 1136.256 kb on - strand, within Pf6N2E2_966 at 1136.256 kb on - strand, within Pf6N2E2_966 at 1136.401 kb on + strand, within Pf6N2E2_966 at 1136.402 kb on - strand, within Pf6N2E2_966 at 1136.458 kb on + strand, within Pf6N2E2_966 at 1136.459 kb on - strand, within Pf6N2E2_966 at 1136.459 kb on - strand, within Pf6N2E2_966 at 1136.509 kb on + strand, within Pf6N2E2_966 at 1136.509 kb on + strand, within Pf6N2E2_966 at 1136.510 kb on - strand, within Pf6N2E2_966 at 1136.510 kb on - strand, within Pf6N2E2_966 at 1136.625 kb on + strand, within Pf6N2E2_966 at 1136.626 kb on - strand, within Pf6N2E2_966 at 1136.661 kb on + strand, within Pf6N2E2_966 at 1136.706 kb on + strand, within Pf6N2E2_966 at 1137.185 kb on + strand, within Pf6N2E2_967 at 1137.189 kb on + strand, within Pf6N2E2_967 at 1137.189 kb on + strand, within Pf6N2E2_967 at 1137.215 kb on + strand at 1137.215 kb on + strand, within Pf6N2E2_967 at 1137.216 kb on - strand, within Pf6N2E2_967 at 1137.216 kb on - strand, within Pf6N2E2_967 at 1137.216 kb on - strand, within Pf6N2E2_967 at 1137.216 kb on - strand, within Pf6N2E2_967 at 1137.253 kb on + strand, within Pf6N2E2_967 at 1137.253 kb on + strand, within Pf6N2E2_967 at 1137.254 kb on - strand, within Pf6N2E2_967 at 1137.328 kb on + strand at 1137.329 kb on - strand at 1137.348 kb on + strand at 1137.348 kb on + strand at 1137.364 kb on - strand at 1137.522 kb on + strand, within Pf6N2E2_968 at 1137.625 kb on + strand, within Pf6N2E2_968 at 1137.625 kb on + strand, within Pf6N2E2_968 at 1137.626 kb on - strand, within Pf6N2E2_968 at 1137.628 kb on + strand, within Pf6N2E2_968 at 1137.754 kb on + strand at 1137.754 kb on + strand at 1137.755 kb on - strand at 1137.788 kb on + strand at 1137.788 kb on + strand at 1137.789 kb on - strand at 1137.789 kb on - strand at 1137.997 kb on + strand, within Pf6N2E2_969 at 1137.997 kb on + strand, within Pf6N2E2_969 at 1138.055 kb on - strand, within Pf6N2E2_969 at 1138.101 kb on + strand, within Pf6N2E2_969 at 1138.130 kb on + strand, within Pf6N2E2_969 at 1138.130 kb on + strand, within Pf6N2E2_969 at 1138.130 kb on + strand, within Pf6N2E2_969 at 1138.131 kb on - strand, within Pf6N2E2_969 at 1138.132 kb on + strand, within Pf6N2E2_969 at 1138.133 kb on - strand, within Pf6N2E2_969 at 1138.263 kb on + strand, within Pf6N2E2_969 at 1138.305 kb on + strand at 1138.305 kb on + strand at 1138.305 kb on + strand at 1138.315 kb on + strand at 1138.316 kb on - strand at 1138.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chromium(III) Chloride Hexahydrate 0.000390625 M remove 1,135,862 - Pf6N2E2_965 0.85 -0.3 1,136,050 + +1.8 1,136,051 - +0.8 1,136,135 - Pf6N2E2_966 0.12 +0.6 1,136,135 - Pf6N2E2_966 0.12 -0.4 1,136,135 - Pf6N2E2_966 0.12 -0.8 1,136,135 - Pf6N2E2_966 0.12 -0.5 1,136,135 - Pf6N2E2_966 0.12 -0.1 1,136,139 + Pf6N2E2_966 0.12 -2.0 1,136,140 - Pf6N2E2_966 0.12 -0.8 1,136,140 - Pf6N2E2_966 0.12 +0.5 1,136,140 - Pf6N2E2_966 0.12 +0.3 1,136,255 + Pf6N2E2_966 0.28 +1.0 1,136,256 - Pf6N2E2_966 0.28 +0.4 1,136,256 - Pf6N2E2_966 0.28 +0.6 1,136,401 + Pf6N2E2_966 0.47 -0.6 1,136,402 - Pf6N2E2_966 0.47 +0.2 1,136,458 + Pf6N2E2_966 0.55 -0.2 1,136,459 - Pf6N2E2_966 0.55 +1.4 1,136,459 - Pf6N2E2_966 0.55 -1.0 1,136,509 + Pf6N2E2_966 0.62 -1.1 1,136,509 + Pf6N2E2_966 0.62 +0.0 1,136,510 - Pf6N2E2_966 0.62 -0.1 1,136,510 - Pf6N2E2_966 0.62 -0.5 1,136,625 + Pf6N2E2_966 0.77 -0.5 1,136,626 - Pf6N2E2_966 0.77 +0.0 1,136,661 + Pf6N2E2_966 0.82 -0.7 1,136,706 + Pf6N2E2_966 0.88 -0.2 1,137,185 + Pf6N2E2_967 0.68 +0.5 1,137,189 + Pf6N2E2_967 0.69 +0.0 1,137,189 + Pf6N2E2_967 0.69 -0.4 1,137,215 + +0.0 1,137,215 + Pf6N2E2_967 0.74 +0.1 1,137,216 - Pf6N2E2_967 0.74 -0.9 1,137,216 - Pf6N2E2_967 0.74 -0.5 1,137,216 - Pf6N2E2_967 0.74 -1.0 1,137,216 - Pf6N2E2_967 0.74 -1.0 1,137,253 + Pf6N2E2_967 0.82 -0.6 1,137,253 + Pf6N2E2_967 0.82 -1.8 1,137,254 - Pf6N2E2_967 0.82 -1.5 1,137,328 + +1.0 1,137,329 - -1.3 1,137,348 + +1.2 1,137,348 + +0.6 1,137,364 - +0.2 1,137,522 + Pf6N2E2_968 0.30 +0.3 1,137,625 + Pf6N2E2_968 0.70 +0.2 1,137,625 + Pf6N2E2_968 0.70 +0.3 1,137,626 - Pf6N2E2_968 0.71 -0.5 1,137,628 + Pf6N2E2_968 0.71 +1.4 1,137,754 + +1.6 1,137,754 + -1.3 1,137,755 - +0.1 1,137,788 + +1.6 1,137,788 + -0.7 1,137,789 - -0.4 1,137,789 - -0.6 1,137,997 + Pf6N2E2_969 0.39 -1.0 1,137,997 + Pf6N2E2_969 0.39 +0.6 1,138,055 - Pf6N2E2_969 0.49 +1.5 1,138,101 + Pf6N2E2_969 0.57 -0.9 1,138,130 + Pf6N2E2_969 0.62 -0.5 1,138,130 + Pf6N2E2_969 0.62 -0.5 1,138,130 + Pf6N2E2_969 0.62 +1.0 1,138,131 - Pf6N2E2_969 0.62 +1.1 1,138,132 + Pf6N2E2_969 0.62 +0.7 1,138,133 - Pf6N2E2_969 0.62 -0.8 1,138,263 + Pf6N2E2_969 0.85 +0.8 1,138,305 + -1.4 1,138,305 + +0.0 1,138,305 + +0.4 1,138,315 + +1.4 1,138,316 - +0.2 1,138,316 - +0.5
Or see this region's nucleotide sequence