Experiment: Chromium(III) Chloride Hexahydrate 0.000390625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5740 and Pf6N2E2_5741 overlap by 8 nucleotides Pf6N2E2_5741 and Pf6N2E2_5742 overlap by 4 nucleotides Pf6N2E2_5742 and Pf6N2E2_5743 are separated by 35 nucleotides Pf6N2E2_5743 and Pf6N2E2_5744 overlap by 4 nucleotides
Pf6N2E2_5740 - Adenosylcobinamide-phosphate synthase (EC 6.3.1.10), at 6,556,816 to 6,557,739
_5740
Pf6N2E2_5741 - L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81), at 6,557,732 to 6,558,724
_5741
Pf6N2E2_5742 - Cobyric acid synthase (EC 6.3.5.10), at 6,558,721 to 6,560,172
_5742
Pf6N2E2_5743 - Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62), at 6,560,208 to 6,560,729
_5743
Pf6N2E2_5744 - Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21), at 6,560,726 to 6,561,781
_5744
Position (kb)
6558
6559
6560
6561 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 6557.731 kb on + strand at 6557.731 kb on + strand at 6557.731 kb on + strand at 6557.913 kb on - strand, within Pf6N2E2_5741 at 6557.915 kb on + strand, within Pf6N2E2_5741 at 6557.915 kb on + strand, within Pf6N2E2_5741 at 6557.915 kb on + strand, within Pf6N2E2_5741 at 6557.915 kb on + strand, within Pf6N2E2_5741 at 6557.931 kb on + strand, within Pf6N2E2_5741 at 6557.931 kb on + strand, within Pf6N2E2_5741 at 6557.931 kb on + strand, within Pf6N2E2_5741 at 6557.931 kb on + strand, within Pf6N2E2_5741 at 6557.932 kb on - strand, within Pf6N2E2_5741 at 6557.932 kb on - strand, within Pf6N2E2_5741 at 6557.932 kb on - strand, within Pf6N2E2_5741 at 6558.053 kb on + strand, within Pf6N2E2_5741 at 6558.053 kb on + strand, within Pf6N2E2_5741 at 6558.342 kb on + strand, within Pf6N2E2_5741 at 6558.343 kb on - strand, within Pf6N2E2_5741 at 6558.343 kb on - strand, within Pf6N2E2_5741 at 6558.343 kb on - strand, within Pf6N2E2_5741 at 6558.626 kb on - strand at 6558.697 kb on - strand at 6558.697 kb on - strand at 6558.697 kb on - strand at 6558.704 kb on + strand at 6558.704 kb on + strand at 6558.705 kb on - strand at 6558.785 kb on + strand at 6559.027 kb on + strand, within Pf6N2E2_5742 at 6559.028 kb on - strand, within Pf6N2E2_5742 at 6559.028 kb on - strand, within Pf6N2E2_5742 at 6559.036 kb on + strand, within Pf6N2E2_5742 at 6559.230 kb on - strand, within Pf6N2E2_5742 at 6559.393 kb on + strand, within Pf6N2E2_5742 at 6559.633 kb on + strand, within Pf6N2E2_5742 at 6559.633 kb on + strand, within Pf6N2E2_5742 at 6559.633 kb on + strand, within Pf6N2E2_5742 at 6559.933 kb on + strand, within Pf6N2E2_5742 at 6559.934 kb on - strand, within Pf6N2E2_5742 at 6559.993 kb on + strand, within Pf6N2E2_5742 at 6559.993 kb on + strand, within Pf6N2E2_5742 at 6559.993 kb on + strand, within Pf6N2E2_5742 at 6559.993 kb on + strand, within Pf6N2E2_5742 at 6559.993 kb on + strand, within Pf6N2E2_5742 at 6559.994 kb on - strand, within Pf6N2E2_5742 at 6559.994 kb on - strand, within Pf6N2E2_5742 at 6559.994 kb on - strand, within Pf6N2E2_5742 at 6559.994 kb on - strand, within Pf6N2E2_5742 at 6559.994 kb on - strand, within Pf6N2E2_5742 at 6560.077 kb on + strand at 6560.078 kb on - strand at 6560.295 kb on + strand, within Pf6N2E2_5743 at 6560.295 kb on + strand, within Pf6N2E2_5743 at 6560.295 kb on + strand, within Pf6N2E2_5743 at 6560.295 kb on + strand, within Pf6N2E2_5743 at 6560.295 kb on + strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.296 kb on - strand, within Pf6N2E2_5743 at 6560.622 kb on + strand, within Pf6N2E2_5743 at 6560.717 kb on + strand at 6560.725 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chromium(III) Chloride Hexahydrate 0.000390625 M remove 6,557,731 + -0.8 6,557,731 + -0.1 6,557,731 + +0.7 6,557,913 - Pf6N2E2_5741 0.18 +0.7 6,557,915 + Pf6N2E2_5741 0.18 +0.7 6,557,915 + Pf6N2E2_5741 0.18 -0.1 6,557,915 + Pf6N2E2_5741 0.18 -1.5 6,557,915 + Pf6N2E2_5741 0.18 -0.5 6,557,931 + Pf6N2E2_5741 0.20 -0.7 6,557,931 + Pf6N2E2_5741 0.20 -2.6 6,557,931 + Pf6N2E2_5741 0.20 +0.7 6,557,931 + Pf6N2E2_5741 0.20 -0.2 6,557,932 - Pf6N2E2_5741 0.20 -0.9 6,557,932 - Pf6N2E2_5741 0.20 +1.7 6,557,932 - Pf6N2E2_5741 0.20 -2.0 6,558,053 + Pf6N2E2_5741 0.32 -2.0 6,558,053 + Pf6N2E2_5741 0.32 -0.5 6,558,342 + Pf6N2E2_5741 0.61 +0.7 6,558,343 - Pf6N2E2_5741 0.62 -0.2 6,558,343 - Pf6N2E2_5741 0.62 -0.4 6,558,343 - Pf6N2E2_5741 0.62 -0.8 6,558,626 - -0.0 6,558,697 - +0.6 6,558,697 - +0.3 6,558,697 - -0.5 6,558,704 + +0.2 6,558,704 + +0.5 6,558,705 - -1.3 6,558,785 + +0.5 6,559,027 + Pf6N2E2_5742 0.21 -0.2 6,559,028 - Pf6N2E2_5742 0.21 -0.7 6,559,028 - Pf6N2E2_5742 0.21 -0.1 6,559,036 + Pf6N2E2_5742 0.22 -1.6 6,559,230 - Pf6N2E2_5742 0.35 -3.4 6,559,393 + Pf6N2E2_5742 0.46 -0.1 6,559,633 + Pf6N2E2_5742 0.63 +0.4 6,559,633 + Pf6N2E2_5742 0.63 -0.4 6,559,633 + Pf6N2E2_5742 0.63 +0.1 6,559,933 + Pf6N2E2_5742 0.83 -1.8 6,559,934 - Pf6N2E2_5742 0.84 -1.0 6,559,993 + Pf6N2E2_5742 0.88 -2.0 6,559,993 + Pf6N2E2_5742 0.88 +0.3 6,559,993 + Pf6N2E2_5742 0.88 -0.3 6,559,993 + Pf6N2E2_5742 0.88 -0.7 6,559,993 + Pf6N2E2_5742 0.88 -2.4 6,559,994 - Pf6N2E2_5742 0.88 +0.0 6,559,994 - Pf6N2E2_5742 0.88 -1.4 6,559,994 - Pf6N2E2_5742 0.88 -1.0 6,559,994 - Pf6N2E2_5742 0.88 +1.0 6,559,994 - Pf6N2E2_5742 0.88 -2.0 6,560,077 + +0.2 6,560,078 - -0.2 6,560,295 + Pf6N2E2_5743 0.17 +0.7 6,560,295 + Pf6N2E2_5743 0.17 +0.5 6,560,295 + Pf6N2E2_5743 0.17 -0.3 6,560,295 + Pf6N2E2_5743 0.17 -0.9 6,560,295 + Pf6N2E2_5743 0.17 -1.2 6,560,296 - Pf6N2E2_5743 0.17 -0.7 6,560,296 - Pf6N2E2_5743 0.17 +0.4 6,560,296 - Pf6N2E2_5743 0.17 +0.5 6,560,296 - Pf6N2E2_5743 0.17 +2.0 6,560,296 - Pf6N2E2_5743 0.17 -0.2 6,560,296 - Pf6N2E2_5743 0.17 +2.2 6,560,296 - Pf6N2E2_5743 0.17 -0.4 6,560,296 - Pf6N2E2_5743 0.17 -0.2 6,560,296 - Pf6N2E2_5743 0.17 +0.4 6,560,622 + Pf6N2E2_5743 0.79 -1.3 6,560,717 + -1.0 6,560,725 + +0.7
Or see this region's nucleotide sequence