Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_418

Experiment: Chromium(III) Chloride Hexahydrate 0.000390625 M

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_417 and Pf6N2E2_418 are separated by 33 nucleotidesPf6N2E2_418 and Pf6N2E2_419 are separated by 39 nucleotidesPf6N2E2_419 and Pf6N2E2_420 are separated by 15 nucleotidesPf6N2E2_420 and Pf6N2E2_421 are separated by 11 nucleotides Pf6N2E2_417 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 484,348 to 486,006 _417 Pf6N2E2_418 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 486,040 to 488,142 _418 Pf6N2E2_419 - STAS domain protein, at 488,182 to 488,466 _419 Pf6N2E2_420 - Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY, at 488,482 to 488,850 _420 Pf6N2E2_421 - Methyl-accepting chemotaxis protein, at 488,862 to 490,013 _421 Position (kb) 486 487 488 489Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 485.630 kb on + strand, within Pf6N2E2_417at 485.631 kb on - strand, within Pf6N2E2_417at 485.700 kb on - strand, within Pf6N2E2_417at 485.810 kb on + strand, within Pf6N2E2_417at 485.810 kb on + strand, within Pf6N2E2_417at 485.811 kb on - strand, within Pf6N2E2_417at 485.985 kb on + strandat 485.985 kb on + strandat 485.986 kb on - strandat 485.986 kb on - strandat 485.986 kb on - strandat 485.993 kb on + strandat 485.993 kb on + strandat 485.993 kb on + strandat 485.993 kb on + strandat 485.993 kb on + strandat 485.994 kb on - strandat 485.994 kb on - strandat 485.994 kb on - strandat 486.014 kb on + strandat 486.014 kb on + strandat 486.014 kb on + strandat 486.014 kb on + strandat 486.015 kb on - strandat 486.034 kb on + strandat 486.061 kb on + strandat 486.062 kb on - strandat 486.371 kb on + strand, within Pf6N2E2_418at 486.371 kb on + strand, within Pf6N2E2_418at 486.449 kb on + strand, within Pf6N2E2_418at 486.449 kb on + strand, within Pf6N2E2_418at 486.449 kb on + strand, within Pf6N2E2_418at 486.449 kb on + strand, within Pf6N2E2_418at 486.449 kb on + strand, within Pf6N2E2_418at 486.449 kb on + strand, within Pf6N2E2_418at 486.450 kb on - strand, within Pf6N2E2_418at 486.450 kb on - strand, within Pf6N2E2_418at 486.450 kb on - strand, within Pf6N2E2_418at 486.450 kb on - strand, within Pf6N2E2_418at 486.450 kb on - strand, within Pf6N2E2_418at 486.450 kb on - strand, within Pf6N2E2_418at 486.450 kb on - strand, within Pf6N2E2_418at 486.668 kb on + strand, within Pf6N2E2_418at 486.668 kb on + strand, within Pf6N2E2_418at 486.668 kb on + strand, within Pf6N2E2_418at 486.669 kb on - strand, within Pf6N2E2_418at 486.669 kb on - strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.226 kb on + strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.227 kb on - strand, within Pf6N2E2_418at 487.520 kb on + strand, within Pf6N2E2_418at 487.520 kb on + strand, within Pf6N2E2_418at 487.521 kb on - strand, within Pf6N2E2_418at 487.521 kb on - strand, within Pf6N2E2_418at 487.521 kb on - strand, within Pf6N2E2_418at 487.608 kb on - strand, within Pf6N2E2_418at 487.754 kb on + strand, within Pf6N2E2_418at 487.754 kb on + strand, within Pf6N2E2_418at 488.148 kb on + strandat 488.149 kb on - strandat 488.170 kb on - strandat 488.170 kb on - strandat 488.170 kb on - strandat 488.278 kb on + strand, within Pf6N2E2_419at 488.278 kb on + strand, within Pf6N2E2_419at 488.278 kb on + strand, within Pf6N2E2_419at 488.278 kb on + strand, within Pf6N2E2_419at 488.279 kb on - strand, within Pf6N2E2_419at 488.279 kb on - strand, within Pf6N2E2_419at 488.279 kb on - strand, within Pf6N2E2_419at 488.279 kb on - strand, within Pf6N2E2_419at 488.400 kb on - strand, within Pf6N2E2_419at 488.400 kb on - strand, within Pf6N2E2_419at 488.454 kb on - strandat 488.631 kb on - strand, within Pf6N2E2_420at 488.631 kb on - strand, within Pf6N2E2_420at 488.836 kb on + strandat 488.837 kb on - strandat 488.864 kb on - strandat 488.864 kb on - strandat 488.941 kb on + strandat 488.941 kb on + strandat 488.941 kb on + strandat 488.941 kb on + strandat 488.941 kb on + strandat 488.942 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Chromium(III) Chloride Hexahydrate 0.000390625 M
remove
485,630 + Pf6N2E2_417 0.77 -0.1
485,631 - Pf6N2E2_417 0.77 -0.8
485,700 - Pf6N2E2_417 0.81 -0.4
485,810 + Pf6N2E2_417 0.88 +0.4
485,810 + Pf6N2E2_417 0.88 +0.6
485,811 - Pf6N2E2_417 0.88 +0.3
485,985 + +0.6
485,985 + -0.0
485,986 - +0.4
485,986 - -0.8
485,986 - -2.2
485,993 + -0.9
485,993 + +0.3
485,993 + +0.9
485,993 + +0.2
485,993 + +0.2
485,994 - -0.2
485,994 - +0.1
485,994 - +0.7
486,014 + +0.1
486,014 + -0.8
486,014 + +1.0
486,014 + +0.3
486,015 - +1.2
486,034 + -0.0
486,061 + +0.3
486,062 - +0.5
486,371 + Pf6N2E2_418 0.16 +1.2
486,371 + Pf6N2E2_418 0.16 +0.1
486,449 + Pf6N2E2_418 0.19 +0.1
486,449 + Pf6N2E2_418 0.19 +0.6
486,449 + Pf6N2E2_418 0.19 +0.6
486,449 + Pf6N2E2_418 0.19 +1.4
486,449 + Pf6N2E2_418 0.19 +0.3
486,449 + Pf6N2E2_418 0.19 +0.4
486,450 - Pf6N2E2_418 0.19 -0.9
486,450 - Pf6N2E2_418 0.19 +0.1
486,450 - Pf6N2E2_418 0.19 +0.0
486,450 - Pf6N2E2_418 0.19 +0.4
486,450 - Pf6N2E2_418 0.19 +0.8
486,450 - Pf6N2E2_418 0.19 +1.2
486,450 - Pf6N2E2_418 0.19 -0.3
486,668 + Pf6N2E2_418 0.30 +0.2
486,668 + Pf6N2E2_418 0.30 -0.1
486,668 + Pf6N2E2_418 0.30 +0.6
486,669 - Pf6N2E2_418 0.30 -0.3
486,669 - Pf6N2E2_418 0.30 +0.1
487,226 + Pf6N2E2_418 0.56 +0.5
487,226 + Pf6N2E2_418 0.56 +0.8
487,226 + Pf6N2E2_418 0.56 +0.5
487,226 + Pf6N2E2_418 0.56 -0.2
487,226 + Pf6N2E2_418 0.56 +0.6
487,226 + Pf6N2E2_418 0.56 +0.6
487,226 + Pf6N2E2_418 0.56 +1.8
487,226 + Pf6N2E2_418 0.56 +1.5
487,226 + Pf6N2E2_418 0.56 +0.4
487,226 + Pf6N2E2_418 0.56 +0.5
487,227 - Pf6N2E2_418 0.56 -0.9
487,227 - Pf6N2E2_418 0.56 -0.8
487,227 - Pf6N2E2_418 0.56 +0.1
487,227 - Pf6N2E2_418 0.56 +1.1
487,227 - Pf6N2E2_418 0.56 -1.2
487,227 - Pf6N2E2_418 0.56 -0.7
487,227 - Pf6N2E2_418 0.56 -1.2
487,227 - Pf6N2E2_418 0.56 -0.6
487,227 - Pf6N2E2_418 0.56 +0.6
487,227 - Pf6N2E2_418 0.56 -0.1
487,227 - Pf6N2E2_418 0.56 -0.0
487,227 - Pf6N2E2_418 0.56 +0.2
487,227 - Pf6N2E2_418 0.56 -1.6
487,520 + Pf6N2E2_418 0.70 -0.5
487,520 + Pf6N2E2_418 0.70 +0.9
487,521 - Pf6N2E2_418 0.70 -1.4
487,521 - Pf6N2E2_418 0.70 -1.7
487,521 - Pf6N2E2_418 0.70 +0.6
487,608 - Pf6N2E2_418 0.75 +0.9
487,754 + Pf6N2E2_418 0.82 +0.8
487,754 + Pf6N2E2_418 0.82 +1.0
488,148 + +0.3
488,149 - +1.6
488,170 - +0.0
488,170 - -1.1
488,170 - +0.4
488,278 + Pf6N2E2_419 0.34 -1.2
488,278 + Pf6N2E2_419 0.34 -0.7
488,278 + Pf6N2E2_419 0.34 +1.0
488,278 + Pf6N2E2_419 0.34 -0.7
488,279 - Pf6N2E2_419 0.34 +0.6
488,279 - Pf6N2E2_419 0.34 +0.3
488,279 - Pf6N2E2_419 0.34 +0.7
488,279 - Pf6N2E2_419 0.34 +1.2
488,400 - Pf6N2E2_419 0.76 -1.5
488,400 - Pf6N2E2_419 0.76 +1.1
488,454 - -0.4
488,631 - Pf6N2E2_420 0.40 +0.2
488,631 - Pf6N2E2_420 0.40 -1.6
488,836 + -0.7
488,837 - -0.8
488,864 - +0.9
488,864 - -4.1
488,941 + -1.1
488,941 + +0.5
488,941 + +0.6
488,941 + -0.4
488,941 + +0.4
488,942 - -0.2

Or see this region's nucleotide sequence