Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3138

Experiment: Chromium(III) Chloride Hexahydrate 0.000390625 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3137 and Pf6N2E2_3138 are separated by 158 nucleotidesPf6N2E2_3138 and Pf6N2E2_3139 are separated by 147 nucleotides Pf6N2E2_3137 - Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-), at 3,628,697 to 3,630,406 _3137 Pf6N2E2_3138 - YaeQ protein, at 3,630,565 to 3,631,107 _3138 Pf6N2E2_3139 - L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16), at 3,631,255 to 3,632,454 _3139 Position (kb) 3630 3631 3632Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3629.570 kb on - strand, within Pf6N2E2_3137at 3629.776 kb on + strand, within Pf6N2E2_3137at 3629.776 kb on + strand, within Pf6N2E2_3137at 3629.776 kb on + strand, within Pf6N2E2_3137at 3629.777 kb on - strand, within Pf6N2E2_3137at 3629.777 kb on - strand, within Pf6N2E2_3137at 3629.784 kb on + strand, within Pf6N2E2_3137at 3629.785 kb on - strand, within Pf6N2E2_3137at 3629.785 kb on - strand, within Pf6N2E2_3137at 3629.785 kb on - strand, within Pf6N2E2_3137at 3629.785 kb on - strand, within Pf6N2E2_3137at 3629.785 kb on - strand, within Pf6N2E2_3137at 3629.829 kb on + strand, within Pf6N2E2_3137at 3629.829 kb on + strand, within Pf6N2E2_3137at 3629.829 kb on + strand, within Pf6N2E2_3137at 3629.830 kb on - strand, within Pf6N2E2_3137at 3629.830 kb on - strand, within Pf6N2E2_3137at 3629.830 kb on - strand, within Pf6N2E2_3137at 3629.830 kb on - strand, within Pf6N2E2_3137at 3630.001 kb on + strand, within Pf6N2E2_3137at 3630.002 kb on - strand, within Pf6N2E2_3137at 3630.008 kb on - strand, within Pf6N2E2_3137at 3630.081 kb on + strand, within Pf6N2E2_3137at 3630.081 kb on + strand, within Pf6N2E2_3137at 3630.082 kb on - strand, within Pf6N2E2_3137at 3630.082 kb on - strand, within Pf6N2E2_3137at 3630.105 kb on + strand, within Pf6N2E2_3137at 3630.106 kb on - strand, within Pf6N2E2_3137at 3630.106 kb on - strand, within Pf6N2E2_3137at 3630.106 kb on - strand, within Pf6N2E2_3137at 3630.330 kb on + strandat 3630.331 kb on - strandat 3630.398 kb on + strandat 3630.398 kb on + strandat 3630.398 kb on + strandat 3630.398 kb on + strandat 3630.398 kb on + strandat 3630.399 kb on - strandat 3630.399 kb on - strandat 3630.399 kb on - strandat 3630.957 kb on - strand, within Pf6N2E2_3138at 3630.968 kb on + strand, within Pf6N2E2_3138at 3630.969 kb on - strand, within Pf6N2E2_3138at 3631.043 kb on + strand, within Pf6N2E2_3138at 3631.043 kb on + strand, within Pf6N2E2_3138at 3631.044 kb on - strand, within Pf6N2E2_3138at 3631.044 kb on - strand, within Pf6N2E2_3138at 3631.044 kb on - strand, within Pf6N2E2_3138at 3631.044 kb on - strand, within Pf6N2E2_3138at 3631.085 kb on + strandat 3631.085 kb on + strandat 3631.085 kb on + strandat 3631.123 kb on + strandat 3631.123 kb on + strandat 3631.123 kb on + strandat 3631.208 kb on - strandat 3631.212 kb on + strandat 3631.212 kb on + strandat 3631.212 kb on + strandat 3631.213 kb on - strandat 3631.213 kb on - strandat 3631.213 kb on - strandat 3631.222 kb on + strandat 3631.415 kb on + strand, within Pf6N2E2_3139at 3631.415 kb on + strand, within Pf6N2E2_3139at 3631.415 kb on + strand, within Pf6N2E2_3139at 3631.416 kb on - strand, within Pf6N2E2_3139at 3631.416 kb on - strand, within Pf6N2E2_3139at 3631.416 kb on - strand, within Pf6N2E2_3139at 3631.416 kb on - strand, within Pf6N2E2_3139at 3631.416 kb on - strand, within Pf6N2E2_3139at 3631.416 kb on - strand, within Pf6N2E2_3139at 3631.418 kb on - strand, within Pf6N2E2_3139at 3631.418 kb on - strand, within Pf6N2E2_3139at 3631.418 kb on - strand, within Pf6N2E2_3139at 3631.712 kb on - strand, within Pf6N2E2_3139at 3631.864 kb on + strand, within Pf6N2E2_3139at 3631.865 kb on - strand, within Pf6N2E2_3139at 3631.865 kb on - strand, within Pf6N2E2_3139

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Per-strain Table

Position Strand Gene LocusTag Fraction Chromium(III) Chloride Hexahydrate 0.000390625 M
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3,629,570 - Pf6N2E2_3137 0.51 -1.4
3,629,776 + Pf6N2E2_3137 0.63 -0.5
3,629,776 + Pf6N2E2_3137 0.63 -1.4
3,629,776 + Pf6N2E2_3137 0.63 +0.4
3,629,777 - Pf6N2E2_3137 0.63 +0.6
3,629,777 - Pf6N2E2_3137 0.63 +0.3
3,629,784 + Pf6N2E2_3137 0.64 +0.2
3,629,785 - Pf6N2E2_3137 0.64 -0.6
3,629,785 - Pf6N2E2_3137 0.64 -0.4
3,629,785 - Pf6N2E2_3137 0.64 -0.1
3,629,785 - Pf6N2E2_3137 0.64 -0.1
3,629,785 - Pf6N2E2_3137 0.64 -0.8
3,629,829 + Pf6N2E2_3137 0.66 -0.0
3,629,829 + Pf6N2E2_3137 0.66 +0.0
3,629,829 + Pf6N2E2_3137 0.66 -0.7
3,629,830 - Pf6N2E2_3137 0.66 +0.6
3,629,830 - Pf6N2E2_3137 0.66 -0.1
3,629,830 - Pf6N2E2_3137 0.66 -0.5
3,629,830 - Pf6N2E2_3137 0.66 -1.1
3,630,001 + Pf6N2E2_3137 0.76 -0.2
3,630,002 - Pf6N2E2_3137 0.76 -0.6
3,630,008 - Pf6N2E2_3137 0.77 +0.1
3,630,081 + Pf6N2E2_3137 0.81 -0.7
3,630,081 + Pf6N2E2_3137 0.81 +2.9
3,630,082 - Pf6N2E2_3137 0.81 +0.3
3,630,082 - Pf6N2E2_3137 0.81 +0.3
3,630,105 + Pf6N2E2_3137 0.82 -1.3
3,630,106 - Pf6N2E2_3137 0.82 +0.3
3,630,106 - Pf6N2E2_3137 0.82 +0.2
3,630,106 - Pf6N2E2_3137 0.82 -0.4
3,630,330 + -1.0
3,630,331 - +0.3
3,630,398 + -1.1
3,630,398 + +0.3
3,630,398 + -0.6
3,630,398 + +0.4
3,630,398 + +0.4
3,630,399 - +0.4
3,630,399 - -0.3
3,630,399 - +0.3
3,630,957 - Pf6N2E2_3138 0.72 +0.4
3,630,968 + Pf6N2E2_3138 0.74 -0.5
3,630,969 - Pf6N2E2_3138 0.74 -0.1
3,631,043 + Pf6N2E2_3138 0.88 -0.6
3,631,043 + Pf6N2E2_3138 0.88 -2.4
3,631,044 - Pf6N2E2_3138 0.88 -0.7
3,631,044 - Pf6N2E2_3138 0.88 -0.8
3,631,044 - Pf6N2E2_3138 0.88 -0.6
3,631,044 - Pf6N2E2_3138 0.88 -1.1
3,631,085 + -0.1
3,631,085 + -0.4
3,631,085 + -0.4
3,631,123 + -0.4
3,631,123 + -1.1
3,631,123 + +1.0
3,631,208 - -0.2
3,631,212 + -0.4
3,631,212 + +0.9
3,631,212 + +0.9
3,631,213 - +0.8
3,631,213 - +1.0
3,631,213 - -1.9
3,631,222 + +0.5
3,631,415 + Pf6N2E2_3139 0.13 +0.7
3,631,415 + Pf6N2E2_3139 0.13 -0.3
3,631,415 + Pf6N2E2_3139 0.13 -0.2
3,631,416 - Pf6N2E2_3139 0.13 +0.3
3,631,416 - Pf6N2E2_3139 0.13 +1.8
3,631,416 - Pf6N2E2_3139 0.13 -0.1
3,631,416 - Pf6N2E2_3139 0.13 -0.0
3,631,416 - Pf6N2E2_3139 0.13 +0.5
3,631,416 - Pf6N2E2_3139 0.13 -1.2
3,631,418 - Pf6N2E2_3139 0.14 -0.2
3,631,418 - Pf6N2E2_3139 0.14 +1.3
3,631,418 - Pf6N2E2_3139 0.14 +0.9
3,631,712 - Pf6N2E2_3139 0.38 -2.4
3,631,864 + Pf6N2E2_3139 0.51 -0.3
3,631,865 - Pf6N2E2_3139 0.51 -0.4
3,631,865 - Pf6N2E2_3139 0.51 +0.4

Or see this region's nucleotide sequence