Experiment: Chromium(III) Chloride Hexahydrate 0.000390625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2442 and Pf6N2E2_2443 overlap by 17 nucleotides Pf6N2E2_2443 and Pf6N2E2_2444 overlap by 4 nucleotides Pf6N2E2_2444 and Pf6N2E2_2445 are separated by 255 nucleotides Pf6N2E2_2445 and Pf6N2E2_2446 are separated by 220 nucleotides
Pf6N2E2_2442 - sensor histidine kinase/response regulator, at 2,892,529 to 2,894,850
_2442
Pf6N2E2_2443 - Organic hydroperoxide resistance transcriptional regulator, at 2,894,834 to 2,895,295
_2443
Pf6N2E2_2444 - Glutathione peroxidase family protein, at 2,895,292 to 2,895,777
_2444
Pf6N2E2_2445 - Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12), at 2,896,033 to 2,896,425
_2445
Pf6N2E2_2446 - Aspartate aminotransferase (EC 2.6.1.1), at 2,896,646 to 2,897,857
_2446
Position (kb)
2895
2896 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2894.309 kb on - strand, within Pf6N2E2_2442 at 2894.357 kb on + strand, within Pf6N2E2_2442 at 2894.357 kb on + strand, within Pf6N2E2_2442 at 2894.357 kb on + strand, within Pf6N2E2_2442 at 2894.357 kb on + strand, within Pf6N2E2_2442 at 2894.358 kb on - strand, within Pf6N2E2_2442 at 2894.393 kb on - strand, within Pf6N2E2_2442 at 2894.773 kb on + strand at 2894.773 kb on + strand at 2894.835 kb on + strand at 2894.836 kb on - strand at 2895.084 kb on - strand, within Pf6N2E2_2443 at 2895.166 kb on - strand, within Pf6N2E2_2443 at 2895.207 kb on + strand, within Pf6N2E2_2443 at 2895.208 kb on - strand, within Pf6N2E2_2443 at 2895.208 kb on - strand, within Pf6N2E2_2443 at 2895.237 kb on + strand, within Pf6N2E2_2443 at 2895.237 kb on + strand, within Pf6N2E2_2443 at 2895.237 kb on + strand, within Pf6N2E2_2443 at 2895.238 kb on - strand, within Pf6N2E2_2443 at 2895.444 kb on + strand, within Pf6N2E2_2444 at 2895.445 kb on - strand, within Pf6N2E2_2444 at 2895.445 kb on - strand, within Pf6N2E2_2444 at 2895.445 kb on - strand, within Pf6N2E2_2444 at 2895.621 kb on - strand at 2895.621 kb on - strand, within Pf6N2E2_2444 at 2895.650 kb on + strand, within Pf6N2E2_2444 at 2895.650 kb on + strand, within Pf6N2E2_2444 at 2895.651 kb on - strand, within Pf6N2E2_2444 at 2895.797 kb on + strand at 2895.924 kb on + strand at 2896.214 kb on + strand, within Pf6N2E2_2445 at 2896.292 kb on + strand, within Pf6N2E2_2445 at 2896.292 kb on + strand, within Pf6N2E2_2445 at 2896.319 kb on + strand, within Pf6N2E2_2445 at 2896.319 kb on + strand, within Pf6N2E2_2445 at 2896.319 kb on + strand, within Pf6N2E2_2445 at 2896.319 kb on + strand, within Pf6N2E2_2445 at 2896.319 kb on + strand, within Pf6N2E2_2445 at 2896.320 kb on - strand, within Pf6N2E2_2445 at 2896.320 kb on - strand, within Pf6N2E2_2445 at 2896.320 kb on - strand, within Pf6N2E2_2445 at 2896.320 kb on - strand, within Pf6N2E2_2445 at 2896.320 kb on - strand, within Pf6N2E2_2445 at 2896.320 kb on - strand, within Pf6N2E2_2445 at 2896.320 kb on - strand, within Pf6N2E2_2445 at 2896.323 kb on + strand, within Pf6N2E2_2445 at 2896.367 kb on + strand, within Pf6N2E2_2445 at 2896.367 kb on + strand, within Pf6N2E2_2445 at 2896.368 kb on - strand, within Pf6N2E2_2445 at 2896.368 kb on - strand, within Pf6N2E2_2445 at 2896.368 kb on - strand, within Pf6N2E2_2445 at 2896.368 kb on - strand at 2896.368 kb on - strand, within Pf6N2E2_2445 at 2896.431 kb on + strand at 2896.487 kb on + strand at 2896.487 kb on + strand at 2896.487 kb on + strand at 2896.488 kb on - strand at 2896.488 kb on - strand at 2896.488 kb on - strand at 2896.488 kb on - strand at 2896.488 kb on - strand at 2896.488 kb on - strand at 2896.488 kb on - strand at 2896.488 kb on - strand at 2896.555 kb on + strand at 2896.555 kb on + strand at 2896.555 kb on + strand at 2896.556 kb on - strand at 2896.556 kb on - strand at 2896.556 kb on - strand at 2896.557 kb on + strand at 2896.557 kb on + strand at 2896.595 kb on + strand at 2896.607 kb on + strand at 2896.608 kb on - strand at 2896.608 kb on - strand at 2896.608 kb on - strand at 2896.608 kb on - strand at 2896.608 kb on - strand at 2896.686 kb on - strand at 2896.686 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chromium(III) Chloride Hexahydrate 0.000390625 M remove 2,894,309 - Pf6N2E2_2442 0.77 +0.1 2,894,357 + Pf6N2E2_2442 0.79 +0.7 2,894,357 + Pf6N2E2_2442 0.79 +1.6 2,894,357 + Pf6N2E2_2442 0.79 -2.1 2,894,357 + Pf6N2E2_2442 0.79 +0.0 2,894,358 - Pf6N2E2_2442 0.79 +0.5 2,894,393 - Pf6N2E2_2442 0.80 +0.1 2,894,773 + -0.2 2,894,773 + -0.1 2,894,835 + -0.5 2,894,836 - -0.3 2,895,084 - Pf6N2E2_2443 0.54 +1.2 2,895,166 - Pf6N2E2_2443 0.72 -1.1 2,895,207 + Pf6N2E2_2443 0.81 +0.3 2,895,208 - Pf6N2E2_2443 0.81 +0.1 2,895,208 - Pf6N2E2_2443 0.81 -1.2 2,895,237 + Pf6N2E2_2443 0.87 -0.1 2,895,237 + Pf6N2E2_2443 0.87 -0.7 2,895,237 + Pf6N2E2_2443 0.87 -0.4 2,895,238 - Pf6N2E2_2443 0.87 -1.3 2,895,444 + Pf6N2E2_2444 0.31 -1.1 2,895,445 - Pf6N2E2_2444 0.31 -0.7 2,895,445 - Pf6N2E2_2444 0.31 -0.6 2,895,445 - Pf6N2E2_2444 0.31 -0.7 2,895,621 - +1.4 2,895,621 - Pf6N2E2_2444 0.68 -0.8 2,895,650 + Pf6N2E2_2444 0.74 -0.5 2,895,650 + Pf6N2E2_2444 0.74 -0.9 2,895,651 - Pf6N2E2_2444 0.74 -0.3 2,895,797 + -0.7 2,895,924 + +1.2 2,896,214 + Pf6N2E2_2445 0.46 -0.0 2,896,292 + Pf6N2E2_2445 0.66 -0.8 2,896,292 + Pf6N2E2_2445 0.66 -0.5 2,896,319 + Pf6N2E2_2445 0.73 -0.6 2,896,319 + Pf6N2E2_2445 0.73 +0.1 2,896,319 + Pf6N2E2_2445 0.73 +2.1 2,896,319 + Pf6N2E2_2445 0.73 +0.3 2,896,319 + Pf6N2E2_2445 0.73 -0.4 2,896,320 - Pf6N2E2_2445 0.73 -2.7 2,896,320 - Pf6N2E2_2445 0.73 +0.2 2,896,320 - Pf6N2E2_2445 0.73 -0.0 2,896,320 - Pf6N2E2_2445 0.73 -0.0 2,896,320 - Pf6N2E2_2445 0.73 -0.1 2,896,320 - Pf6N2E2_2445 0.73 +1.0 2,896,320 - Pf6N2E2_2445 0.73 +0.8 2,896,323 + Pf6N2E2_2445 0.74 +0.6 2,896,367 + Pf6N2E2_2445 0.85 +0.0 2,896,367 + Pf6N2E2_2445 0.85 +0.1 2,896,368 - Pf6N2E2_2445 0.85 +0.2 2,896,368 - Pf6N2E2_2445 0.85 -0.2 2,896,368 - Pf6N2E2_2445 0.85 +0.9 2,896,368 - +1.4 2,896,368 - Pf6N2E2_2445 0.85 +0.2 2,896,431 + -0.3 2,896,487 + +0.2 2,896,487 + -1.4 2,896,487 + +0.1 2,896,488 - -0.4 2,896,488 - -1.7 2,896,488 - +1.4 2,896,488 - +0.4 2,896,488 - +0.6 2,896,488 - +0.5 2,896,488 - -0.6 2,896,488 - +1.0 2,896,555 + +1.8 2,896,555 + -0.3 2,896,555 + +0.3 2,896,556 - +1.0 2,896,556 - -0.5 2,896,556 - +0.4 2,896,557 + -1.3 2,896,557 + +1.0 2,896,595 + +0.8 2,896,607 + +0.4 2,896,608 - -0.3 2,896,608 - -2.3 2,896,608 - +0.3 2,896,608 - +0.2 2,896,608 - +0.0 2,896,686 - +1.0 2,896,686 - -1.8
Or see this region's nucleotide sequence