Experiment: Chromium(III) Chloride Hexahydrate 0.000390625 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1316 and Pf6N2E2_1317 are separated by 66 nucleotides Pf6N2E2_1317 and Pf6N2E2_1318 are separated by 311 nucleotides
Pf6N2E2_1316 - P-hydroxyphenylacetate hydroxylase C1:reductase component, at 1,549,715 to 1,550,656
_1316
Pf6N2E2_1317 - P-hydroxyphenylacetate hydroxylase C2:oxygenase component, at 1,550,723 to 1,551,892
_1317
Pf6N2E2_1318 - FIG00553873: hypothetical protein, at 1,552,204 to 1,553,502
_1318
Position (kb)
1550
1551
1552 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1549.859 kb on + strand, within Pf6N2E2_1316 at 1550.046 kb on + strand, within Pf6N2E2_1316 at 1550.046 kb on + strand, within Pf6N2E2_1316 at 1550.047 kb on - strand, within Pf6N2E2_1316 at 1550.047 kb on - strand, within Pf6N2E2_1316 at 1550.059 kb on - strand, within Pf6N2E2_1316 at 1550.059 kb on - strand, within Pf6N2E2_1316 at 1550.085 kb on + strand, within Pf6N2E2_1316 at 1550.085 kb on + strand, within Pf6N2E2_1316 at 1550.599 kb on + strand at 1550.600 kb on - strand at 1550.693 kb on + strand at 1550.693 kb on + strand at 1550.701 kb on + strand at 1550.707 kb on + strand at 1550.790 kb on + strand at 1550.799 kb on + strand at 1550.800 kb on - strand at 1550.925 kb on + strand, within Pf6N2E2_1317 at 1550.925 kb on + strand, within Pf6N2E2_1317 at 1550.926 kb on - strand, within Pf6N2E2_1317 at 1550.988 kb on + strand, within Pf6N2E2_1317 at 1551.199 kb on - strand, within Pf6N2E2_1317 at 1551.199 kb on - strand, within Pf6N2E2_1317 at 1551.411 kb on + strand, within Pf6N2E2_1317 at 1551.735 kb on + strand, within Pf6N2E2_1317 at 1551.906 kb on + strand at 1551.907 kb on - strand at 1552.131 kb on - strand at 1552.133 kb on + strand at 1552.228 kb on + strand at 1552.228 kb on + strand at 1552.229 kb on - strand at 1552.229 kb on - strand at 1552.229 kb on - strand at 1552.231 kb on + strand at 1552.249 kb on + strand at 1552.249 kb on + strand at 1552.428 kb on + strand, within Pf6N2E2_1318 at 1552.549 kb on + strand, within Pf6N2E2_1318 at 1552.585 kb on + strand, within Pf6N2E2_1318 at 1552.586 kb on - strand, within Pf6N2E2_1318 at 1552.653 kb on + strand, within Pf6N2E2_1318 at 1552.717 kb on + strand, within Pf6N2E2_1318
Per-strain Table
Position Strand Gene LocusTag Fraction Chromium(III) Chloride Hexahydrate 0.000390625 M remove 1,549,859 + Pf6N2E2_1316 0.15 +0.2 1,550,046 + Pf6N2E2_1316 0.35 +0.5 1,550,046 + Pf6N2E2_1316 0.35 -0.6 1,550,047 - Pf6N2E2_1316 0.35 +0.7 1,550,047 - Pf6N2E2_1316 0.35 -0.6 1,550,059 - Pf6N2E2_1316 0.37 -2.9 1,550,059 - Pf6N2E2_1316 0.37 -1.5 1,550,085 + Pf6N2E2_1316 0.39 -1.1 1,550,085 + Pf6N2E2_1316 0.39 +0.7 1,550,599 + -0.6 1,550,600 - +0.5 1,550,693 + +0.3 1,550,693 + +0.6 1,550,701 + +0.3 1,550,707 + -1.7 1,550,790 + -0.3 1,550,799 + +0.5 1,550,800 - -0.2 1,550,925 + Pf6N2E2_1317 0.17 +0.0 1,550,925 + Pf6N2E2_1317 0.17 -0.8 1,550,926 - Pf6N2E2_1317 0.17 -1.6 1,550,988 + Pf6N2E2_1317 0.23 +0.2 1,551,199 - Pf6N2E2_1317 0.41 +0.4 1,551,199 - Pf6N2E2_1317 0.41 -2.2 1,551,411 + Pf6N2E2_1317 0.59 -2.5 1,551,735 + Pf6N2E2_1317 0.86 -0.9 1,551,906 + +1.0 1,551,907 - -1.6 1,552,131 - +0.8 1,552,133 + -1.0 1,552,228 + +1.0 1,552,228 + +1.1 1,552,229 - -0.6 1,552,229 - +1.3 1,552,229 - +0.1 1,552,231 + +2.6 1,552,249 + -1.6 1,552,249 + -0.2 1,552,428 + Pf6N2E2_1318 0.17 -0.3 1,552,549 + Pf6N2E2_1318 0.27 -0.3 1,552,585 + Pf6N2E2_1318 0.29 +0.1 1,552,586 - Pf6N2E2_1318 0.29 -0.0 1,552,653 + Pf6N2E2_1318 0.35 +0.3 1,552,717 + Pf6N2E2_1318 0.39 +0.3
Or see this region's nucleotide sequence