Experiment: PYE 0.5x 4C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_01952 and CCNA_03959 are separated by 368 nucleotides CCNA_03959 and CCNA_01954 overlap by 77 nucleotides
CCNA_01952: CCNA_01952 - N-acetylmuramoyl-L-alanine amidase, at 2,095,782 to 2,096,969
_01952
CCNA_03959: CCNA_03959 - hypothetical protein, at 2,097,338 to 2,097,556
_03959
CCNA_01954: CCNA_01954 - ribonuclease E, at 2,097,480 to 2,100,176
_01954
Position (kb)
2097
2098 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2096.420 kb on - strand, within CCNA_01952 at 2096.923 kb on + strand at 2096.923 kb on + strand at 2096.923 kb on + strand at 2096.923 kb on + strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.931 kb on - strand at 2096.942 kb on - strand at 2096.942 kb on - strand at 2096.952 kb on + strand at 2096.965 kb on - strand at 2096.967 kb on - strand at 2097.012 kb on - strand at 2097.042 kb on - strand at 2097.097 kb on - strand at 2097.117 kb on + strand at 2097.125 kb on - strand at 2097.128 kb on + strand at 2097.186 kb on + strand at 2097.221 kb on + strand at 2097.322 kb on + strand at 2097.368 kb on + strand at 2097.420 kb on + strand, within CCNA_03959 at 2097.451 kb on - strand, within CCNA_03959
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C remove 2,096,420 - CCNA_01952 0.54 +0.4 2,096,923 + +2.0 2,096,923 + -1.4 2,096,923 + -1.1 2,096,923 + +0.8 2,096,931 - +0.3 2,096,931 - -0.0 2,096,931 - -2.1 2,096,931 - -0.4 2,096,931 - -0.1 2,096,931 - -1.1 2,096,931 - -0.5 2,096,931 - +0.6 2,096,931 - -1.4 2,096,931 - +1.2 2,096,942 - -0.0 2,096,942 - +0.6 2,096,952 + +0.1 2,096,965 - +0.5 2,096,967 - +0.1 2,097,012 - +0.1 2,097,042 - +1.1 2,097,097 - +1.3 2,097,117 + -0.9 2,097,125 - -0.4 2,097,128 + -1.3 2,097,186 + +0.4 2,097,221 + +0.5 2,097,322 + -3.3 2,097,368 + +1.4 2,097,420 + CCNA_03959 0.37 -3.9 2,097,451 - CCNA_03959 0.52 -2.5
Or see this region's nucleotide sequence