Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03702

Experiment: PYE 0.5x 4C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03700 and CCNA_03701 are separated by 81 nucleotidesCCNA_03701 and CCNA_03702 are separated by 202 nucleotidesCCNA_03702 and CCNA_03703 are separated by 148 nucleotidesCCNA_03703 and CCNA_03704 are separated by 114 nucleotides CCNA_03700: CCNA_03700 - large-conductance mechanosensitive channel, at 3,868,697 to 3,869,116 _03700 CCNA_03701: CCNA_03701 - integration host factor beta-subunit, at 3,869,198 to 3,869,488 _03701 CCNA_03702: CCNA_03702 - SSU ribosomal protein S1P, at 3,869,691 to 3,871,400 _03702 CCNA_03703: CCNA_03703 - cytidylate kinase, at 3,871,549 to 3,872,190 _03703 CCNA_03704: CCNA_03704 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 3,872,305 to 3,873,636 _03704 Position (kb) 3869 3870 3871 3872Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3868.692 kb on - strandat 3868.704 kb on + strandat 3868.742 kb on + strand, within CCNA_03700at 3868.774 kb on + strand, within CCNA_03700at 3868.806 kb on + strand, within CCNA_03700at 3868.814 kb on - strand, within CCNA_03700at 3868.883 kb on + strand, within CCNA_03700at 3869.035 kb on - strand, within CCNA_03700at 3869.060 kb on - strand, within CCNA_03700at 3869.064 kb on - strand, within CCNA_03700at 3869.070 kb on + strand, within CCNA_03700at 3869.116 kb on + strandat 3869.124 kb on - strandat 3869.128 kb on + strandat 3869.143 kb on - strandat 3869.145 kb on + strandat 3869.151 kb on + strandat 3869.181 kb on - strandat 3869.192 kb on - strandat 3869.192 kb on - strandat 3869.244 kb on + strand, within CCNA_03701at 3869.277 kb on + strand, within CCNA_03701at 3869.319 kb on + strand, within CCNA_03701at 3869.350 kb on + strand, within CCNA_03701at 3869.473 kb on + strandat 3869.473 kb on + strandat 3869.473 kb on + strandat 3869.473 kb on + strandat 3869.481 kb on - strandat 3869.481 kb on - strandat 3869.481 kb on - strandat 3869.689 kb on + strandat 3870.076 kb on - strand, within CCNA_03702at 3870.244 kb on - strand, within CCNA_03702at 3872.191 kb on + strandat 3872.191 kb on + strandat 3872.194 kb on - strandat 3872.199 kb on - strandat 3872.215 kb on + strandat 3872.225 kb on + strandat 3872.226 kb on + strandat 3872.233 kb on - strandat 3872.234 kb on - strandat 3872.240 kb on + strandat 3872.240 kb on + strandat 3872.245 kb on - strandat 3872.253 kb on - strandat 3872.271 kb on + strandat 3872.273 kb on - strandat 3872.278 kb on - strandat 3872.279 kb on - strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.303 kb on + strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.311 kb on - strandat 3872.333 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C
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3,868,692 - +0.4
3,868,704 + +0.7
3,868,742 + CCNA_03700 0.11 -1.1
3,868,774 + CCNA_03700 0.18 -0.0
3,868,806 + CCNA_03700 0.26 +1.1
3,868,814 - CCNA_03700 0.28 +0.6
3,868,883 + CCNA_03700 0.44 -3.0
3,869,035 - CCNA_03700 0.80 -1.2
3,869,060 - CCNA_03700 0.86 -0.5
3,869,064 - CCNA_03700 0.87 +0.8
3,869,070 + CCNA_03700 0.89 -0.7
3,869,116 + -0.1
3,869,124 - +0.7
3,869,128 + +0.1
3,869,143 - -0.4
3,869,145 + -1.2
3,869,151 + -0.7
3,869,181 - -0.2
3,869,192 - -0.0
3,869,192 - +0.7
3,869,244 + CCNA_03701 0.16 -1.7
3,869,277 + CCNA_03701 0.27 -2.8
3,869,319 + CCNA_03701 0.42 -3.3
3,869,350 + CCNA_03701 0.52 -1.6
3,869,473 + -2.3
3,869,473 + -1.8
3,869,473 + -1.0
3,869,473 + -1.6
3,869,481 - -1.4
3,869,481 - -1.7
3,869,481 - -1.3
3,869,689 + -1.3
3,870,076 - CCNA_03702 0.23 +1.9
3,870,244 - CCNA_03702 0.32 -3.7
3,872,191 + -0.3
3,872,191 + -4.0
3,872,194 - +0.4
3,872,199 - +0.8
3,872,215 + -0.3
3,872,225 + +2.1
3,872,226 + -2.3
3,872,233 - +0.3
3,872,234 - +0.1
3,872,240 + -2.1
3,872,240 + -1.4
3,872,245 - +1.3
3,872,253 - +0.4
3,872,271 + -1.8
3,872,273 - -0.3
3,872,278 - +1.0
3,872,279 - -0.0
3,872,303 + -1.1
3,872,303 + -2.4
3,872,303 + -1.1
3,872,303 + -0.3
3,872,311 - +0.5
3,872,311 - +0.2
3,872,311 - +0.0
3,872,311 - +0.4
3,872,311 - +1.7
3,872,311 - -1.1
3,872,333 - -0.4

Or see this region's nucleotide sequence