Experiment: PYE 0.5x 4C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03598 and CCNA_03995 are separated by 126 nucleotides CCNA_03995 and CCNA_03599 are separated by 99 nucleotides CCNA_03599 and CCNA_03600 are separated by 164 nucleotides
CCNA_03598: CCNA_03598 - two-component sensor histidine kinase DivL, at 3,750,296 to 3,752,605
_03598
CCNA_03995: CCNA_03995 - hypothetical protein, at 3,752,732 to 3,752,809
_03995
CCNA_03599: CCNA_03599 - aspartate-semialdehyde dehydrogenase, at 3,752,909 to 3,753,955
_03599
CCNA_03600: CCNA_03600 - integral membrane protein, at 3,754,120 to 3,754,890
_03600
Position (kb)
3752
3753
3754 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3752.145 kb on + strand, within CCNA_03598 at 3752.145 kb on + strand, within CCNA_03598 at 3752.145 kb on + strand, within CCNA_03598 at 3752.187 kb on + strand, within CCNA_03598 at 3752.456 kb on + strand at 3752.565 kb on - strand at 3752.565 kb on - strand at 3752.572 kb on + strand at 3752.577 kb on + strand at 3752.587 kb on + strand at 3752.652 kb on + strand at 3752.660 kb on - strand at 3752.660 kb on - strand at 3752.676 kb on + strand at 3752.693 kb on + strand at 3752.701 kb on - strand at 3752.706 kb on + strand at 3752.817 kb on + strand at 3752.851 kb on + strand at 3752.851 kb on - strand at 3752.863 kb on - strand at 3752.872 kb on - strand at 3752.881 kb on + strand at 3752.889 kb on - strand at 3752.923 kb on + strand at 3752.954 kb on + strand at 3752.961 kb on + strand at 3752.986 kb on - strand at 3753.001 kb on - strand at 3753.029 kb on - strand, within CCNA_03599 at 3753.046 kb on - strand, within CCNA_03599 at 3753.123 kb on - strand, within CCNA_03599 at 3753.124 kb on + strand, within CCNA_03599 at 3753.139 kb on + strand, within CCNA_03599 at 3753.153 kb on + strand, within CCNA_03599 at 3753.153 kb on + strand, within CCNA_03599 at 3753.161 kb on - strand, within CCNA_03599 at 3753.161 kb on - strand, within CCNA_03599 at 3753.221 kb on + strand, within CCNA_03599 at 3753.235 kb on + strand, within CCNA_03599 at 3753.276 kb on + strand, within CCNA_03599 at 3753.278 kb on + strand, within CCNA_03599 at 3753.278 kb on + strand, within CCNA_03599 at 3753.278 kb on + strand at 3753.278 kb on + strand, within CCNA_03599 at 3753.278 kb on + strand, within CCNA_03599 at 3753.278 kb on + strand, within CCNA_03599 at 3753.278 kb on + strand at 3753.284 kb on - strand, within CCNA_03599 at 3753.286 kb on - strand, within CCNA_03599 at 3753.286 kb on - strand at 3753.288 kb on + strand, within CCNA_03599 at 3753.316 kb on + strand, within CCNA_03599 at 3753.351 kb on - strand, within CCNA_03599 at 3753.358 kb on - strand, within CCNA_03599 at 3753.368 kb on + strand, within CCNA_03599 at 3753.368 kb on + strand, within CCNA_03599 at 3753.368 kb on + strand, within CCNA_03599 at 3753.393 kb on - strand, within CCNA_03599 at 3753.426 kb on + strand, within CCNA_03599 at 3753.429 kb on + strand, within CCNA_03599 at 3753.446 kb on - strand, within CCNA_03599 at 3753.478 kb on - strand at 3753.478 kb on - strand, within CCNA_03599 at 3753.478 kb on - strand, within CCNA_03599 at 3753.480 kb on + strand, within CCNA_03599 at 3753.501 kb on + strand, within CCNA_03599 at 3753.528 kb on - strand, within CCNA_03599 at 3753.531 kb on - strand, within CCNA_03599 at 3753.541 kb on + strand, within CCNA_03599 at 3753.549 kb on - strand, within CCNA_03599 at 3753.557 kb on + strand, within CCNA_03599 at 3753.564 kb on + strand, within CCNA_03599 at 3753.570 kb on - strand, within CCNA_03599 at 3753.585 kb on + strand, within CCNA_03599 at 3753.600 kb on + strand, within CCNA_03599 at 3753.600 kb on + strand, within CCNA_03599 at 3753.608 kb on - strand, within CCNA_03599 at 3753.640 kb on - strand, within CCNA_03599 at 3753.708 kb on + strand, within CCNA_03599 at 3753.743 kb on + strand, within CCNA_03599 at 3753.751 kb on - strand, within CCNA_03599 at 3753.784 kb on - strand, within CCNA_03599 at 3753.820 kb on - strand, within CCNA_03599 at 3753.843 kb on + strand, within CCNA_03599 at 3753.857 kb on + strand at 3753.865 kb on - strand at 3753.867 kb on + strand at 3753.867 kb on + strand at 3753.875 kb on - strand at 3753.875 kb on - strand at 3753.875 kb on - strand at 3753.885 kb on - strand at 3753.898 kb on + strand at 3753.913 kb on + strand at 3753.921 kb on - strand at 3753.931 kb on - strand at 3753.957 kb on - strand at 3753.965 kb on - strand at 3754.005 kb on + strand at 3754.067 kb on + strand at 3754.088 kb on + strand at 3754.092 kb on - strand at 3754.103 kb on - strand at 3754.103 kb on - strand at 3754.105 kb on + strand at 3754.113 kb on - strand at 3754.113 kb on - strand at 3754.113 kb on - strand at 3754.113 kb on - strand at 3754.113 kb on - strand at 3754.113 kb on - strand at 3754.113 kb on - strand at 3754.179 kb on + strand at 3754.193 kb on - strand at 3754.198 kb on - strand, within CCNA_03600 at 3754.200 kb on + strand, within CCNA_03600 at 3754.208 kb on - strand, within CCNA_03600 at 3754.208 kb on - strand, within CCNA_03600 at 3754.213 kb on - strand, within CCNA_03600 at 3754.245 kb on + strand, within CCNA_03600 at 3754.253 kb on - strand, within CCNA_03600 at 3754.268 kb on + strand, within CCNA_03600 at 3754.318 kb on + strand, within CCNA_03600 at 3754.323 kb on + strand, within CCNA_03600 at 3754.326 kb on - strand, within CCNA_03600 at 3754.336 kb on - strand, within CCNA_03600 at 3754.338 kb on + strand, within CCNA_03600 at 3754.377 kb on + strand, within CCNA_03600 at 3754.380 kb on - strand, within CCNA_03600 at 3754.398 kb on + strand, within CCNA_03600 at 3754.445 kb on + strand, within CCNA_03600 at 3754.461 kb on + strand, within CCNA_03600 at 3754.469 kb on - strand, within CCNA_03600 at 3754.478 kb on + strand, within CCNA_03600 at 3754.478 kb on + strand, within CCNA_03600 at 3754.478 kb on + strand, within CCNA_03600 at 3754.486 kb on - strand, within CCNA_03600 at 3754.486 kb on - strand, within CCNA_03600 at 3754.510 kb on - strand, within CCNA_03600 at 3754.583 kb on - strand, within CCNA_03600 at 3754.596 kb on + strand, within CCNA_03600 at 3754.598 kb on + strand, within CCNA_03600 at 3754.606 kb on - strand, within CCNA_03600 at 3754.638 kb on - strand, within CCNA_03600 at 3754.681 kb on - strand, within CCNA_03600 at 3754.720 kb on + strand, within CCNA_03600 at 3754.760 kb on - strand, within CCNA_03600 at 3754.767 kb on - strand, within CCNA_03600 at 3754.785 kb on + strand, within CCNA_03600 at 3754.793 kb on - strand, within CCNA_03600 at 3754.827 kb on - strand at 3754.879 kb on + strand at 3754.879 kb on + strand at 3754.879 kb on + strand at 3754.879 kb on + strand at 3754.879 kb on + strand at 3754.879 kb on + strand at 3754.887 kb on - strand at 3754.887 kb on - strand at 3754.887 kb on - strand at 3754.887 kb on - strand at 3754.949 kb on + strand at 3754.949 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C remove 3,752,145 + CCNA_03598 0.80 +1.3 3,752,145 + CCNA_03598 0.80 -2.9 3,752,145 + CCNA_03598 0.80 -0.1 3,752,187 + CCNA_03598 0.82 -1.1 3,752,456 + -1.8 3,752,565 - -1.1 3,752,565 - -0.7 3,752,572 + -1.5 3,752,577 + -1.0 3,752,587 + -0.5 3,752,652 + +0.4 3,752,660 - -1.0 3,752,660 - +1.3 3,752,676 + -0.4 3,752,693 + +0.5 3,752,701 - -0.5 3,752,706 + -0.1 3,752,817 + -0.1 3,752,851 + +0.6 3,752,851 - +0.3 3,752,863 - -1.7 3,752,872 - -1.8 3,752,881 + +0.7 3,752,889 - -0.7 3,752,923 + -0.9 3,752,954 + +1.2 3,752,961 + +0.1 3,752,986 - -0.4 3,753,001 - -1.9 3,753,029 - CCNA_03599 0.11 +0.7 3,753,046 - CCNA_03599 0.13 -3.4 3,753,123 - CCNA_03599 0.20 -1.0 3,753,124 + CCNA_03599 0.21 -0.1 3,753,139 + CCNA_03599 0.22 -2.8 3,753,153 + CCNA_03599 0.23 -1.4 3,753,153 + CCNA_03599 0.23 +1.4 3,753,161 - CCNA_03599 0.24 -0.8 3,753,161 - CCNA_03599 0.24 +2.3 3,753,221 + CCNA_03599 0.30 -0.8 3,753,235 + CCNA_03599 0.31 -0.3 3,753,276 + CCNA_03599 0.35 -1.0 3,753,278 + CCNA_03599 0.35 +0.3 3,753,278 + CCNA_03599 0.35 +1.9 3,753,278 + +1.4 3,753,278 + CCNA_03599 0.35 -1.2 3,753,278 + CCNA_03599 0.35 +0.1 3,753,278 + CCNA_03599 0.35 -1.1 3,753,278 + -0.3 3,753,284 - CCNA_03599 0.36 -0.6 3,753,286 - CCNA_03599 0.36 -1.2 3,753,286 - -1.1 3,753,288 + CCNA_03599 0.36 +0.2 3,753,316 + CCNA_03599 0.39 -0.5 3,753,351 - CCNA_03599 0.42 -0.3 3,753,358 - CCNA_03599 0.43 -2.3 3,753,368 + CCNA_03599 0.44 +0.1 3,753,368 + CCNA_03599 0.44 +0.2 3,753,368 + CCNA_03599 0.44 +0.6 3,753,393 - CCNA_03599 0.46 +0.5 3,753,426 + CCNA_03599 0.49 -1.8 3,753,429 + CCNA_03599 0.50 +1.9 3,753,446 - CCNA_03599 0.51 +1.1 3,753,478 - -1.7 3,753,478 - CCNA_03599 0.54 +1.9 3,753,478 - CCNA_03599 0.54 -0.4 3,753,480 + CCNA_03599 0.55 -1.2 3,753,501 + CCNA_03599 0.57 +1.9 3,753,528 - CCNA_03599 0.59 +2.2 3,753,531 - CCNA_03599 0.59 +0.5 3,753,541 + CCNA_03599 0.60 -0.6 3,753,549 - CCNA_03599 0.61 -2.0 3,753,557 + CCNA_03599 0.62 +0.7 3,753,564 + CCNA_03599 0.63 +0.2 3,753,570 - CCNA_03599 0.63 -3.2 3,753,585 + CCNA_03599 0.65 +0.3 3,753,600 + CCNA_03599 0.66 -1.4 3,753,600 + CCNA_03599 0.66 +0.8 3,753,608 - CCNA_03599 0.67 +1.4 3,753,640 - CCNA_03599 0.70 +0.6 3,753,708 + CCNA_03599 0.76 -1.4 3,753,743 + CCNA_03599 0.80 +0.3 3,753,751 - CCNA_03599 0.80 +1.9 3,753,784 - CCNA_03599 0.84 +2.1 3,753,820 - CCNA_03599 0.87 -1.4 3,753,843 + CCNA_03599 0.89 -2.0 3,753,857 + +1.2 3,753,865 - +0.9 3,753,867 + -2.4 3,753,867 + +0.2 3,753,875 - +0.5 3,753,875 - -2.3 3,753,875 - -0.9 3,753,885 - -1.1 3,753,898 + +1.7 3,753,913 + -3.3 3,753,921 - +0.6 3,753,931 - +0.3 3,753,957 - +1.9 3,753,965 - -0.4 3,754,005 + -0.2 3,754,067 + +0.1 3,754,088 + +0.4 3,754,092 - +1.5 3,754,103 - -2.3 3,754,103 - -1.6 3,754,105 + -0.3 3,754,113 - -2.3 3,754,113 - -1.7 3,754,113 - -1.2 3,754,113 - -0.0 3,754,113 - +2.9 3,754,113 - -0.0 3,754,113 - -1.1 3,754,179 + -0.0 3,754,193 - +1.4 3,754,198 - CCNA_03600 0.10 -1.3 3,754,200 + CCNA_03600 0.10 +0.3 3,754,208 - CCNA_03600 0.11 -1.2 3,754,208 - CCNA_03600 0.11 -0.3 3,754,213 - CCNA_03600 0.12 +0.1 3,754,245 + CCNA_03600 0.16 -1.1 3,754,253 - CCNA_03600 0.17 -1.1 3,754,268 + CCNA_03600 0.19 +0.1 3,754,318 + CCNA_03600 0.26 -0.0 3,754,323 + CCNA_03600 0.26 -0.2 3,754,326 - CCNA_03600 0.27 -0.9 3,754,336 - CCNA_03600 0.28 -0.4 3,754,338 + CCNA_03600 0.28 -0.2 3,754,377 + CCNA_03600 0.33 -0.3 3,754,380 - CCNA_03600 0.34 -2.3 3,754,398 + CCNA_03600 0.36 -1.4 3,754,445 + CCNA_03600 0.42 +0.5 3,754,461 + CCNA_03600 0.44 -0.0 3,754,469 - CCNA_03600 0.45 -2.4 3,754,478 + CCNA_03600 0.46 +1.9 3,754,478 + CCNA_03600 0.46 +1.6 3,754,478 + CCNA_03600 0.46 +0.4 3,754,486 - CCNA_03600 0.47 -0.0 3,754,486 - CCNA_03600 0.47 -1.3 3,754,510 - CCNA_03600 0.51 -1.1 3,754,583 - CCNA_03600 0.60 -0.4 3,754,596 + CCNA_03600 0.62 +0.6 3,754,598 + CCNA_03600 0.62 -1.3 3,754,606 - CCNA_03600 0.63 -1.0 3,754,638 - CCNA_03600 0.67 -2.5 3,754,681 - CCNA_03600 0.73 +0.0 3,754,720 + CCNA_03600 0.78 -0.8 3,754,760 - CCNA_03600 0.83 -0.9 3,754,767 - CCNA_03600 0.84 -1.3 3,754,785 + CCNA_03600 0.86 -2.9 3,754,793 - CCNA_03600 0.87 +0.6 3,754,827 - +1.0 3,754,879 + +0.5 3,754,879 + -1.7 3,754,879 + +1.7 3,754,879 + +0.5 3,754,879 + +0.1 3,754,879 + -0.7 3,754,887 - +0.3 3,754,887 - +0.5 3,754,887 - -1.7 3,754,887 - +1.3 3,754,949 + +1.6 3,754,949 + +1.2
Or see this region's nucleotide sequence