Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03599

Experiment: PYE 0.5x 4C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03598 and CCNA_03995 are separated by 126 nucleotidesCCNA_03995 and CCNA_03599 are separated by 99 nucleotidesCCNA_03599 and CCNA_03600 are separated by 164 nucleotides CCNA_03598: CCNA_03598 - two-component sensor histidine kinase DivL, at 3,750,296 to 3,752,605 _03598 CCNA_03995: CCNA_03995 - hypothetical protein, at 3,752,732 to 3,752,809 _03995 CCNA_03599: CCNA_03599 - aspartate-semialdehyde dehydrogenase, at 3,752,909 to 3,753,955 _03599 CCNA_03600: CCNA_03600 - integral membrane protein, at 3,754,120 to 3,754,890 _03600 Position (kb) 3752 3753 3754Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3752.145 kb on + strand, within CCNA_03598at 3752.145 kb on + strand, within CCNA_03598at 3752.145 kb on + strand, within CCNA_03598at 3752.187 kb on + strand, within CCNA_03598at 3752.456 kb on + strandat 3752.565 kb on - strandat 3752.565 kb on - strandat 3752.572 kb on + strandat 3752.577 kb on + strandat 3752.587 kb on + strandat 3752.652 kb on + strandat 3752.660 kb on - strandat 3752.660 kb on - strandat 3752.676 kb on + strandat 3752.693 kb on + strandat 3752.701 kb on - strandat 3752.706 kb on + strandat 3752.817 kb on + strandat 3752.851 kb on + strandat 3752.851 kb on - strandat 3752.863 kb on - strandat 3752.872 kb on - strandat 3752.881 kb on + strandat 3752.889 kb on - strandat 3752.923 kb on + strandat 3752.954 kb on + strandat 3752.961 kb on + strandat 3752.986 kb on - strandat 3753.001 kb on - strandat 3753.029 kb on - strand, within CCNA_03599at 3753.046 kb on - strand, within CCNA_03599at 3753.123 kb on - strand, within CCNA_03599at 3753.124 kb on + strand, within CCNA_03599at 3753.139 kb on + strand, within CCNA_03599at 3753.153 kb on + strand, within CCNA_03599at 3753.153 kb on + strand, within CCNA_03599at 3753.161 kb on - strand, within CCNA_03599at 3753.161 kb on - strand, within CCNA_03599at 3753.221 kb on + strand, within CCNA_03599at 3753.235 kb on + strand, within CCNA_03599at 3753.276 kb on + strand, within CCNA_03599at 3753.278 kb on + strand, within CCNA_03599at 3753.278 kb on + strand, within CCNA_03599at 3753.278 kb on + strandat 3753.278 kb on + strand, within CCNA_03599at 3753.278 kb on + strand, within CCNA_03599at 3753.278 kb on + strand, within CCNA_03599at 3753.278 kb on + strandat 3753.284 kb on - strand, within CCNA_03599at 3753.286 kb on - strand, within CCNA_03599at 3753.286 kb on - strandat 3753.288 kb on + strand, within CCNA_03599at 3753.316 kb on + strand, within CCNA_03599at 3753.351 kb on - strand, within CCNA_03599at 3753.358 kb on - strand, within CCNA_03599at 3753.368 kb on + strand, within CCNA_03599at 3753.368 kb on + strand, within CCNA_03599at 3753.368 kb on + strand, within CCNA_03599at 3753.393 kb on - strand, within CCNA_03599at 3753.426 kb on + strand, within CCNA_03599at 3753.429 kb on + strand, within CCNA_03599at 3753.446 kb on - strand, within CCNA_03599at 3753.478 kb on - strandat 3753.478 kb on - strand, within CCNA_03599at 3753.478 kb on - strand, within CCNA_03599at 3753.480 kb on + strand, within CCNA_03599at 3753.501 kb on + strand, within CCNA_03599at 3753.528 kb on - strand, within CCNA_03599at 3753.531 kb on - strand, within CCNA_03599at 3753.541 kb on + strand, within CCNA_03599at 3753.549 kb on - strand, within CCNA_03599at 3753.557 kb on + strand, within CCNA_03599at 3753.564 kb on + strand, within CCNA_03599at 3753.570 kb on - strand, within CCNA_03599at 3753.585 kb on + strand, within CCNA_03599at 3753.600 kb on + strand, within CCNA_03599at 3753.600 kb on + strand, within CCNA_03599at 3753.608 kb on - strand, within CCNA_03599at 3753.640 kb on - strand, within CCNA_03599at 3753.708 kb on + strand, within CCNA_03599at 3753.743 kb on + strand, within CCNA_03599at 3753.751 kb on - strand, within CCNA_03599at 3753.784 kb on - strand, within CCNA_03599at 3753.820 kb on - strand, within CCNA_03599at 3753.843 kb on + strand, within CCNA_03599at 3753.857 kb on + strandat 3753.865 kb on - strandat 3753.867 kb on + strandat 3753.867 kb on + strandat 3753.875 kb on - strandat 3753.875 kb on - strandat 3753.875 kb on - strandat 3753.885 kb on - strandat 3753.898 kb on + strandat 3753.913 kb on + strandat 3753.921 kb on - strandat 3753.931 kb on - strandat 3753.957 kb on - strandat 3753.965 kb on - strandat 3754.005 kb on + strandat 3754.067 kb on + strandat 3754.088 kb on + strandat 3754.092 kb on - strandat 3754.103 kb on - strandat 3754.103 kb on - strandat 3754.105 kb on + strandat 3754.113 kb on - strandat 3754.113 kb on - strandat 3754.113 kb on - strandat 3754.113 kb on - strandat 3754.113 kb on - strandat 3754.113 kb on - strandat 3754.113 kb on - strandat 3754.179 kb on + strandat 3754.193 kb on - strandat 3754.198 kb on - strand, within CCNA_03600at 3754.200 kb on + strand, within CCNA_03600at 3754.208 kb on - strand, within CCNA_03600at 3754.208 kb on - strand, within CCNA_03600at 3754.213 kb on - strand, within CCNA_03600at 3754.245 kb on + strand, within CCNA_03600at 3754.253 kb on - strand, within CCNA_03600at 3754.268 kb on + strand, within CCNA_03600at 3754.318 kb on + strand, within CCNA_03600at 3754.323 kb on + strand, within CCNA_03600at 3754.326 kb on - strand, within CCNA_03600at 3754.336 kb on - strand, within CCNA_03600at 3754.338 kb on + strand, within CCNA_03600at 3754.377 kb on + strand, within CCNA_03600at 3754.380 kb on - strand, within CCNA_03600at 3754.398 kb on + strand, within CCNA_03600at 3754.445 kb on + strand, within CCNA_03600at 3754.461 kb on + strand, within CCNA_03600at 3754.469 kb on - strand, within CCNA_03600at 3754.478 kb on + strand, within CCNA_03600at 3754.478 kb on + strand, within CCNA_03600at 3754.478 kb on + strand, within CCNA_03600at 3754.486 kb on - strand, within CCNA_03600at 3754.486 kb on - strand, within CCNA_03600at 3754.510 kb on - strand, within CCNA_03600at 3754.583 kb on - strand, within CCNA_03600at 3754.596 kb on + strand, within CCNA_03600at 3754.598 kb on + strand, within CCNA_03600at 3754.606 kb on - strand, within CCNA_03600at 3754.638 kb on - strand, within CCNA_03600at 3754.681 kb on - strand, within CCNA_03600at 3754.720 kb on + strand, within CCNA_03600at 3754.760 kb on - strand, within CCNA_03600at 3754.767 kb on - strand, within CCNA_03600at 3754.785 kb on + strand, within CCNA_03600at 3754.793 kb on - strand, within CCNA_03600at 3754.827 kb on - strandat 3754.879 kb on + strandat 3754.879 kb on + strandat 3754.879 kb on + strandat 3754.879 kb on + strandat 3754.879 kb on + strandat 3754.879 kb on + strandat 3754.887 kb on - strandat 3754.887 kb on - strandat 3754.887 kb on - strandat 3754.887 kb on - strandat 3754.949 kb on + strandat 3754.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C
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3,752,145 + CCNA_03598 0.80 +1.3
3,752,145 + CCNA_03598 0.80 -2.9
3,752,145 + CCNA_03598 0.80 -0.1
3,752,187 + CCNA_03598 0.82 -1.1
3,752,456 + -1.8
3,752,565 - -1.1
3,752,565 - -0.7
3,752,572 + -1.5
3,752,577 + -1.0
3,752,587 + -0.5
3,752,652 + +0.4
3,752,660 - -1.0
3,752,660 - +1.3
3,752,676 + -0.4
3,752,693 + +0.5
3,752,701 - -0.5
3,752,706 + -0.1
3,752,817 + -0.1
3,752,851 + +0.6
3,752,851 - +0.3
3,752,863 - -1.7
3,752,872 - -1.8
3,752,881 + +0.7
3,752,889 - -0.7
3,752,923 + -0.9
3,752,954 + +1.2
3,752,961 + +0.1
3,752,986 - -0.4
3,753,001 - -1.9
3,753,029 - CCNA_03599 0.11 +0.7
3,753,046 - CCNA_03599 0.13 -3.4
3,753,123 - CCNA_03599 0.20 -1.0
3,753,124 + CCNA_03599 0.21 -0.1
3,753,139 + CCNA_03599 0.22 -2.8
3,753,153 + CCNA_03599 0.23 -1.4
3,753,153 + CCNA_03599 0.23 +1.4
3,753,161 - CCNA_03599 0.24 -0.8
3,753,161 - CCNA_03599 0.24 +2.3
3,753,221 + CCNA_03599 0.30 -0.8
3,753,235 + CCNA_03599 0.31 -0.3
3,753,276 + CCNA_03599 0.35 -1.0
3,753,278 + CCNA_03599 0.35 +0.3
3,753,278 + CCNA_03599 0.35 +1.9
3,753,278 + +1.4
3,753,278 + CCNA_03599 0.35 -1.2
3,753,278 + CCNA_03599 0.35 +0.1
3,753,278 + CCNA_03599 0.35 -1.1
3,753,278 + -0.3
3,753,284 - CCNA_03599 0.36 -0.6
3,753,286 - CCNA_03599 0.36 -1.2
3,753,286 - -1.1
3,753,288 + CCNA_03599 0.36 +0.2
3,753,316 + CCNA_03599 0.39 -0.5
3,753,351 - CCNA_03599 0.42 -0.3
3,753,358 - CCNA_03599 0.43 -2.3
3,753,368 + CCNA_03599 0.44 +0.1
3,753,368 + CCNA_03599 0.44 +0.2
3,753,368 + CCNA_03599 0.44 +0.6
3,753,393 - CCNA_03599 0.46 +0.5
3,753,426 + CCNA_03599 0.49 -1.8
3,753,429 + CCNA_03599 0.50 +1.9
3,753,446 - CCNA_03599 0.51 +1.1
3,753,478 - -1.7
3,753,478 - CCNA_03599 0.54 +1.9
3,753,478 - CCNA_03599 0.54 -0.4
3,753,480 + CCNA_03599 0.55 -1.2
3,753,501 + CCNA_03599 0.57 +1.9
3,753,528 - CCNA_03599 0.59 +2.2
3,753,531 - CCNA_03599 0.59 +0.5
3,753,541 + CCNA_03599 0.60 -0.6
3,753,549 - CCNA_03599 0.61 -2.0
3,753,557 + CCNA_03599 0.62 +0.7
3,753,564 + CCNA_03599 0.63 +0.2
3,753,570 - CCNA_03599 0.63 -3.2
3,753,585 + CCNA_03599 0.65 +0.3
3,753,600 + CCNA_03599 0.66 -1.4
3,753,600 + CCNA_03599 0.66 +0.8
3,753,608 - CCNA_03599 0.67 +1.4
3,753,640 - CCNA_03599 0.70 +0.6
3,753,708 + CCNA_03599 0.76 -1.4
3,753,743 + CCNA_03599 0.80 +0.3
3,753,751 - CCNA_03599 0.80 +1.9
3,753,784 - CCNA_03599 0.84 +2.1
3,753,820 - CCNA_03599 0.87 -1.4
3,753,843 + CCNA_03599 0.89 -2.0
3,753,857 + +1.2
3,753,865 - +0.9
3,753,867 + -2.4
3,753,867 + +0.2
3,753,875 - +0.5
3,753,875 - -2.3
3,753,875 - -0.9
3,753,885 - -1.1
3,753,898 + +1.7
3,753,913 + -3.3
3,753,921 - +0.6
3,753,931 - +0.3
3,753,957 - +1.9
3,753,965 - -0.4
3,754,005 + -0.2
3,754,067 + +0.1
3,754,088 + +0.4
3,754,092 - +1.5
3,754,103 - -2.3
3,754,103 - -1.6
3,754,105 + -0.3
3,754,113 - -2.3
3,754,113 - -1.7
3,754,113 - -1.2
3,754,113 - -0.0
3,754,113 - +2.9
3,754,113 - -0.0
3,754,113 - -1.1
3,754,179 + -0.0
3,754,193 - +1.4
3,754,198 - CCNA_03600 0.10 -1.3
3,754,200 + CCNA_03600 0.10 +0.3
3,754,208 - CCNA_03600 0.11 -1.2
3,754,208 - CCNA_03600 0.11 -0.3
3,754,213 - CCNA_03600 0.12 +0.1
3,754,245 + CCNA_03600 0.16 -1.1
3,754,253 - CCNA_03600 0.17 -1.1
3,754,268 + CCNA_03600 0.19 +0.1
3,754,318 + CCNA_03600 0.26 -0.0
3,754,323 + CCNA_03600 0.26 -0.2
3,754,326 - CCNA_03600 0.27 -0.9
3,754,336 - CCNA_03600 0.28 -0.4
3,754,338 + CCNA_03600 0.28 -0.2
3,754,377 + CCNA_03600 0.33 -0.3
3,754,380 - CCNA_03600 0.34 -2.3
3,754,398 + CCNA_03600 0.36 -1.4
3,754,445 + CCNA_03600 0.42 +0.5
3,754,461 + CCNA_03600 0.44 -0.0
3,754,469 - CCNA_03600 0.45 -2.4
3,754,478 + CCNA_03600 0.46 +1.9
3,754,478 + CCNA_03600 0.46 +1.6
3,754,478 + CCNA_03600 0.46 +0.4
3,754,486 - CCNA_03600 0.47 -0.0
3,754,486 - CCNA_03600 0.47 -1.3
3,754,510 - CCNA_03600 0.51 -1.1
3,754,583 - CCNA_03600 0.60 -0.4
3,754,596 + CCNA_03600 0.62 +0.6
3,754,598 + CCNA_03600 0.62 -1.3
3,754,606 - CCNA_03600 0.63 -1.0
3,754,638 - CCNA_03600 0.67 -2.5
3,754,681 - CCNA_03600 0.73 +0.0
3,754,720 + CCNA_03600 0.78 -0.8
3,754,760 - CCNA_03600 0.83 -0.9
3,754,767 - CCNA_03600 0.84 -1.3
3,754,785 + CCNA_03600 0.86 -2.9
3,754,793 - CCNA_03600 0.87 +0.6
3,754,827 - +1.0
3,754,879 + +0.5
3,754,879 + -1.7
3,754,879 + +1.7
3,754,879 + +0.5
3,754,879 + +0.1
3,754,879 + -0.7
3,754,887 - +0.3
3,754,887 - +0.5
3,754,887 - -1.7
3,754,887 - +1.3
3,754,949 + +1.6
3,754,949 + +1.2

Or see this region's nucleotide sequence