Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01546

Experiment: PYE 0.5x 4C

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C
1,655,373	-		CCNA_01545	0.28	-1.0
1,655,416	+		CCNA_01545	0.32	-0.8
1,655,425	-		CCNA_01545	0.33	+2.3
1,655,440	+		CCNA_01545	0.34	+3.3
1,655,475	+		CCNA_01545	0.37	+1.3
1,655,549	+		CCNA_01545	0.43	-1.6
1,655,549	+		CCNA_01545	0.43	-0.4
1,655,549	+		CCNA_01545	0.43	+1.1
1,655,549	+		CCNA_01545	0.43	-1.3
1,655,549	+		CCNA_01545	0.43	-0.0
1,655,549	+		CCNA_01545	0.43	+0.8
1,655,549	+		CCNA_01545	0.43	+0.3
1,655,550	+		CCNA_01545	0.43	-1.2
1,655,557	-		CCNA_01545	0.44	-1.0
1,655,557	-		CCNA_01545	0.44	+1.3
1,655,557	-		CCNA_01545	0.44	-0.8
1,655,557	-		CCNA_01545	0.44	+0.0
1,655,586	+		CCNA_01545	0.46	+0.2
1,655,591	+		CCNA_01545	0.47	-0.8
1,655,594	-		CCNA_01545	0.47	-2.0
1,655,594	-		CCNA_01545	0.47	-0.5
1,655,615	+		CCNA_01545	0.49	+0.1
1,655,623	-		CCNA_01545	0.49	+0.0
1,655,692	+		CCNA_01545	0.55	+0.4
1,655,722	-		CCNA_01545	0.58	-0.5
1,655,791	+		CCNA_01545	0.64	+0.4
1,655,831	+		CCNA_01545	0.67	-0.3
1,655,841	-		CCNA_01545	0.68	+2.3
1,655,879	+		CCNA_01545	0.71	+0.5
1,655,887	-		CCNA_01545	0.72	+1.3
1,655,896	+		CCNA_01545	0.73	-0.6
1,655,944	+		CCNA_01545	0.77	+0.0
1,655,945	+		CCNA_01545	0.77	-0.8
1,655,952	-		CCNA_01545	0.77	-0.0
1,655,961	+		CCNA_01545	0.78	-0.5
1,655,969	-		CCNA_01545	0.79	-0.2
1,655,972	+		CCNA_01545	0.79	-0.4
1,655,980	-		CCNA_01545	0.80	+2.3
1,655,980	-		CCNA_01545	0.80	-0.2
1,655,980	-		CCNA_01545	0.80	+1.3
1,656,009	+		CCNA_01545	0.82	+0.5
1,656,018	-		CCNA_01545	0.83	-1.1
1,656,048	+		CCNA_01545	0.85	-1.4
1,656,058	+		CCNA_01545	0.86	+0.6
1,656,066	-		CCNA_01545	0.87	-1.1
1,656,066	-		CCNA_01545	0.87	-0.5
1,656,077	+		CCNA_01545	0.88	+1.6
1,656,085	+		CCNA_01545	0.88	-0.8
1,656,085	-		CCNA_01545	0.88	-2.0
1,656,100	+		CCNA_01545	0.90	+0.7
1,656,100	+		CCNA_01545	0.90	+0.5
1,656,100	+		CCNA_01545	0.90	-3.6
1,656,100	+		CCNA_01545	0.90	+1.5
1,656,108	-				-1.6
1,656,108	-				-0.7
1,656,108	-				-0.5
1,656,108	-				-0.7
1,656,111	+				+0.4
1,656,196	-				+0.8
1,656,269	+				+0.3
1,656,277	-				+0.5
1,656,277	-				-0.8
1,656,277	-				+1.7
1,656,277	-				+0.6
1,656,286	-				+0.5
1,656,318	+				-0.7
1,656,421	-				-0.4
1,656,473	+				-1.4
1,656,473	+				-3.9
1,656,476	-				+0.2
1,656,499	-				+0.3
1,656,566	+				-0.7
1,656,579	-		CCNA_01546	0.10	-1.5
1,656,581	-		CCNA_01546	0.10	-2.7
1,656,615	+		CCNA_01546	0.12	+0.2
1,656,615	+		CCNA_01546	0.12	-1.2
1,656,615	+		CCNA_01546	0.12	-1.3
1,656,623	-		CCNA_01546	0.12	-2.2
1,656,623	-		CCNA_01546	0.12	+1.5
1,656,638	+		CCNA_01546	0.13	-2.0
1,656,698	+		CCNA_01546	0.16	+0.4
1,656,699	+		CCNA_01546	0.16	+0.1
1,656,699	+		CCNA_01546	0.16	+0.8
1,656,710	+		CCNA_01546	0.16	-1.0
1,656,710	+		CCNA_01546	0.16	-2.9
1,656,710	+		CCNA_01546	0.16	-1.6
1,656,718	-		CCNA_01546	0.16	-0.9
1,656,718	-		CCNA_01546	0.16	+1.4
1,656,718	-		CCNA_01546	0.16	-0.5
1,656,718	-		CCNA_01546	0.16	-2.7
1,656,718	-		CCNA_01546	0.16	-0.9
1,656,718	-		CCNA_01546	0.16	-3.7
1,656,730	+		CCNA_01546	0.17	-1.7
1,656,730	+		CCNA_01546	0.17	-2.9
1,656,730	+		CCNA_01546	0.17	-1.2
1,656,730	+		CCNA_01546	0.17	-3.9
1,656,736	+		CCNA_01546	0.17	+0.0
1,656,738	-		CCNA_01546	0.17	-3.4
1,656,738	-		CCNA_01546	0.17	-1.3
1,656,738	-		CCNA_01546	0.17	-2.4
1,656,738	-		CCNA_01546	0.17	-0.4
1,656,738	-		CCNA_01546	0.17	-0.9
1,656,745	-		CCNA_01546	0.18	+0.4
1,656,776	-		CCNA_01546	0.19	-1.4
1,656,791	-		CCNA_01546	0.20	-2.7
1,656,791	-		CCNA_01546	0.20	-0.7
1,656,791	-		CCNA_01546	0.20	-1.8
1,656,791	-		CCNA_01546	0.20	-1.0
1,656,791	-		CCNA_01546	0.20	-0.5
1,656,814	-		CCNA_01546	0.21	+0.0
1,656,832	+		CCNA_01546	0.22	+1.4
1,656,866	-		CCNA_01546	0.23	-2.8
1,656,957	-		CCNA_01546	0.27	-1.3
1,656,959	+		CCNA_01546	0.27	-0.8
1,656,966	+		CCNA_01546	0.28	-1.9
1,656,982	+		CCNA_01546	0.28	+0.4
1,656,990	-		CCNA_01546	0.29	-0.5
1,656,990	-		CCNA_01546	0.29	-4.2
1,656,990	-		CCNA_01546	0.29	+0.3
1,656,990	-		CCNA_01546	0.29	+0.2
1,657,059	-		CCNA_01546	0.32	-2.2
1,657,169	-		CCNA_01546	0.37	-1.0
1,657,169	-		CCNA_01546	0.37	-1.2
1,657,169	-		CCNA_01546	0.37	-2.2
1,657,206	+		CCNA_01546	0.38	-2.5
1,657,206	+		CCNA_01546	0.38	-1.1
1,657,206	+		CCNA_01546	0.38	-3.0
1,657,214	-		CCNA_01546	0.39	-2.4
1,657,238	-		CCNA_01546	0.40	-2.8
1,657,251	+		CCNA_01546	0.40	-2.5
1,657,251	+		CCNA_01546	0.40	-2.9
1,657,259	-		CCNA_01546	0.41	-1.3
1,657,259	-		CCNA_01546	0.41	-2.4
1,657,274	+		CCNA_01546	0.41	-1.0
1,657,276	+		CCNA_01546	0.42	-1.4
1,657,307	-		CCNA_01546	0.43	-1.8
1,657,321	-		CCNA_01546	0.44	-3.2
1,657,321	-		CCNA_01546	0.44	-1.0
1,657,357	-		CCNA_01546	0.45	-1.1
1,657,359	+		CCNA_01546	0.45	+0.8
1,657,364	+		CCNA_01546	0.45	-4.2
1,657,364	+		CCNA_01546	0.45	-0.7
1,657,372	-		CCNA_01546	0.46	-2.4
1,657,390	+		CCNA_01546	0.47	-0.9
1,657,437	-		CCNA_01546	0.49	-2.2
1,657,460	-		CCNA_01546	0.50	-2.7
1,657,496	+		CCNA_01546	0.51	-1.0
1,657,509	-		CCNA_01546	0.52	-3.3
1,657,514	+		CCNA_01546	0.52	-2.0
1,657,514	+		CCNA_01546	0.52	-1.1
1,657,522	-		CCNA_01546	0.53	-2.1
1,657,531	+		CCNA_01546	0.53	-4.3
1,657,550	+		CCNA_01546	0.54	-1.7
1,657,558	+		CCNA_01546	0.54	-1.6
1,657,564	-		CCNA_01546	0.54	-3.2
1,657,566	-		CCNA_01546	0.55	-2.7
1,657,589	-		CCNA_01546	0.56	-0.8
1,657,591	+		CCNA_01546	0.56	-3.3
1,657,599	-		CCNA_01546	0.56	-2.9
1,657,607	-		CCNA_01546	0.56	-2.9
1,657,646	-		CCNA_01546	0.58	-1.7
1,657,653	+		CCNA_01546	0.58	-1.9
1,657,653	+		CCNA_01546	0.58	-1.2
1,657,661	-		CCNA_01546	0.59	-2.0
1,657,661	-		CCNA_01546	0.59	-1.2
1,657,693	-		CCNA_01546	0.60	-1.0
1,657,770	-		CCNA_01546	0.64	-3.2
1,657,799	-		CCNA_01546	0.65	-1.4
1,657,834	+		CCNA_01546	0.67	-3.4
1,657,894	+		CCNA_01546	0.69	-1.1
1,657,902	-		CCNA_01546	0.70	-3.6
1,657,978	-		CCNA_01546	0.73	-3.3
1,657,978	-		CCNA_01546	0.73	+2.3
1,657,985	+		CCNA_01546	0.73	-2.3
1,657,985	+		CCNA_01546	0.73	+1.3
1,657,985	+		CCNA_01546	0.73	-0.7
1,658,021	+		CCNA_01546	0.75	-2.1
1,658,021	+		CCNA_01546	0.75	+0.3
1,658,021	+		CCNA_01546	0.75	-1.7
1,658,029	-		CCNA_01546	0.75	-0.8
1,658,031	+		CCNA_01546	0.75	-2.1
1,658,044	-		CCNA_01546	0.76	-0.2
1,658,069	+		CCNA_01546	0.77	-2.1
1,658,077	-		CCNA_01546	0.77	-0.2
1,658,079	-		CCNA_01546	0.78	-0.5
1,658,098	-		CCNA_01546	0.78	-0.4
1,658,143	-		CCNA_01546	0.80	-1.6
1,658,145	+		CCNA_01546	0.81	-0.7
1,658,145	+		CCNA_01546	0.81	+0.3
1,658,145	+		CCNA_01546	0.81	-2.2
1,658,210	+		CCNA_01546	0.83	-0.8
1,658,210	+		CCNA_01546	0.83	+0.3
1,658,218	-		CCNA_01546	0.84	-3.5
1,658,235	-		CCNA_01546	0.85	-1.5
1,658,260	+		CCNA_01546	0.86	+2.3
1,658,273	+		CCNA_01546	0.86	+0.0
1,658,273	+		CCNA_01546	0.86	-0.8
1,658,273	+		CCNA_01546	0.86	-1.7
1,658,281	-		CCNA_01546	0.87	-2.4
1,658,281	-		CCNA_01546	0.87	-3.0
1,658,281	-		CCNA_01546	0.87	+2.3
1,658,285	+		CCNA_01546	0.87	-2.9
1,658,285	+		CCNA_01546	0.87	-0.2
1,658,285	+		CCNA_01546	0.87	-0.7
1,658,293	-		CCNA_01546	0.87	+0.3
1,658,293	-		CCNA_01546	0.87	+0.0
1,658,293	-		CCNA_01546	0.87	-1.7
1,658,301	+		CCNA_01546	0.88	-1.2
1,658,344	+		CCNA_01546	0.89	-1.7
1,658,441	-				-0.2
1,658,458	-				-0.7
1,658,498	-				-1.9
1,658,510	-				-2.8
1,658,519	+				-1.0
1,658,519	+				-1.4
1,658,519	+				+0.0
1,658,519	+				+2.3
1,658,519	+				-1.1
1,658,519	+				-0.2
1,658,519	+				-1.1
1,658,524	+				-0.7
1,658,524	+				+0.8
1,658,527	-				-2.2
1,658,527	-				-1.3
1,658,527	-				-2.8
1,658,527	-				-2.1
1,658,527	-				-2.1
1,658,527	-				-1.6
1,658,527	-				-4.5
1,658,527	-				-1.0
1,658,532	-				-3.2
1,658,567	-				-0.7
1,658,590	-				+0.5
1,658,595	-				-1.6
1,658,610	-				+0.3
1,658,619	+				-1.4
1,658,645	-				-4.9
1,658,654	+				-3.6
1,658,675	-				+0.9
1,658,787	+				+2.3
1,658,789	+				+1.2
1,658,795	-				-0.7
1,658,810	-				-0.1
1,658,817	+				+1.0
1,658,820	-				+0.5
1,658,827	+				-0.7
1,658,831	-				-0.5
1,658,847	+				+0.1
1,658,855	-				+2.3
1,658,881	+				+1.3
1,658,908	+		CCNA_03953	0.14	+2.9
1,658,957	-		CCNA_03953	0.26	-1.0
1,658,967	-		CCNA_03953	0.28	-1.9
1,658,970	+		CCNA_03953	0.29	+0.6
1,658,970	+		CCNA_03953	0.29	+2.3
1,658,978	-		CCNA_03953	0.31	-0.8
1,658,995	+		CCNA_03953	0.35	+0.0
1,658,995	+		CCNA_03953	0.35	-0.5
1,659,062	-		CCNA_03953	0.51	-0.2
1,659,069	+		CCNA_03953	0.53	-0.8
1,659,077	-		CCNA_03953	0.55	+1.0
1,659,077	-		CCNA_03953	0.55	-1.0
1,659,105	+		CCNA_03953	0.62	-1.6
1,659,118	+		CCNA_03953	0.65	+1.1
1,659,138	+		CCNA_03953	0.70	+1.3
1,659,152	+		CCNA_03953	0.73	+1.3
1,659,153	+		CCNA_03953	0.73	+0.4
1,659,153	+		CCNA_03953	0.73	-1.4
1,659,160	-		CCNA_03953	0.75	-0.7
1,659,175	+		CCNA_03953	0.79	+2.3
1,659,180	+		CCNA_03953	0.80	-1.1
1,659,185	+		CCNA_03953	0.81	-2.4
1,659,188	-		CCNA_03953	0.82	-1.8
1,659,205	-		CCNA_03953	0.86	+0.3
1,659,210	+		CCNA_03953	0.87	+2.9
1,659,210	+		CCNA_03953	0.87	-0.9
1,659,218	-		CCNA_03953	0.89	+1.5
1,659,233	+				-0.8
1,659,393	+				-0.9
1,659,393	+				-1.6