Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00784

Experiment: PYE 0.5x 4C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00783 and CCNA_00784 are separated by 254 nucleotidesCCNA_00784 and CCNA_00785 are separated by 252 nucleotides CCNA_00783: CCNA_00783 - secreted protease precursor sapA, at 844,450 to 846,426 _00783 CCNA_00784: CCNA_00784 - peptidoglycan-associated outer membrane lipoprotein, at 846,681 to 847,904 _00784 CCNA_00785: CCNA_00785 - tRNA methyltransferase/FAD-dependent oxidoreductase MnmC, at 848,157 to 849,932 _00785 Position (kb) 846 847 848Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 845.683 kb on + strand, within CCNA_00783at 845.691 kb on - strand, within CCNA_00783at 845.719 kb on - strand, within CCNA_00783at 845.719 kb on - strand, within CCNA_00783at 845.738 kb on + strand, within CCNA_00783at 845.738 kb on + strand, within CCNA_00783at 845.739 kb on - strand, within CCNA_00783at 845.746 kb on - strand, within CCNA_00783at 845.755 kb on + strand, within CCNA_00783at 845.785 kb on + strand, within CCNA_00783at 845.785 kb on + strand, within CCNA_00783at 845.793 kb on - strand, within CCNA_00783at 845.793 kb on - strand, within CCNA_00783at 845.793 kb on - strand, within CCNA_00783at 845.793 kb on - strand, within CCNA_00783at 845.802 kb on - strand, within CCNA_00783at 845.821 kb on + strand, within CCNA_00783at 845.887 kb on + strand, within CCNA_00783at 845.920 kb on + strand, within CCNA_00783at 845.920 kb on + strand, within CCNA_00783at 845.988 kb on - strand, within CCNA_00783at 846.056 kb on - strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.058 kb on + strand, within CCNA_00783at 846.077 kb on + strand, within CCNA_00783at 846.093 kb on + strand, within CCNA_00783at 846.093 kb on + strand, within CCNA_00783at 846.103 kb on + strandat 846.111 kb on - strand, within CCNA_00783at 846.111 kb on - strand, within CCNA_00783at 846.138 kb on - strand, within CCNA_00783at 846.148 kb on - strand, within CCNA_00783at 846.148 kb on - strand, within CCNA_00783at 846.208 kb on + strand, within CCNA_00783at 846.208 kb on + strand, within CCNA_00783at 846.208 kb on + strand, within CCNA_00783at 846.216 kb on - strand, within CCNA_00783at 846.216 kb on - strand, within CCNA_00783at 846.216 kb on - strand, within CCNA_00783at 846.242 kb on - strandat 846.277 kb on + strandat 846.293 kb on - strandat 846.340 kb on + strandat 846.348 kb on + strandat 846.351 kb on - strandat 846.399 kb on + strandat 846.399 kb on + strandat 846.406 kb on - strandat 846.406 kb on - strandat 846.419 kb on + strandat 846.419 kb on + strandat 846.419 kb on + strandat 846.427 kb on - strandat 846.443 kb on + strandat 846.443 kb on + strandat 846.443 kb on + strandat 846.451 kb on - strandat 846.451 kb on - strandat 846.461 kb on - strandat 846.509 kb on + strandat 846.509 kb on + strandat 846.517 kb on - strandat 846.517 kb on - strandat 846.524 kb on + strandat 846.525 kb on + strandat 846.525 kb on + strandat 846.532 kb on - strandat 846.532 kb on - strandat 846.533 kb on - strandat 846.533 kb on - strandat 846.578 kb on + strandat 846.616 kb on + strandat 846.616 kb on + strandat 846.649 kb on - strandat 846.722 kb on + strandat 846.744 kb on + strandat 846.754 kb on + strandat 846.805 kb on - strand, within CCNA_00784at 846.806 kb on - strand, within CCNA_00784at 846.814 kb on - strand, within CCNA_00784at 846.828 kb on - strand, within CCNA_00784at 846.837 kb on - strand, within CCNA_00784at 846.842 kb on + strand, within CCNA_00784at 846.857 kb on + strand, within CCNA_00784at 846.865 kb on - strand, within CCNA_00784at 846.908 kb on + strand, within CCNA_00784at 846.916 kb on - strandat 846.918 kb on + strand, within CCNA_00784at 846.963 kb on + strand, within CCNA_00784at 846.963 kb on + strand, within CCNA_00784at 846.963 kb on + strand, within CCNA_00784at 846.963 kb on + strand, within CCNA_00784at 846.963 kb on + strand, within CCNA_00784at 846.963 kb on + strand, within CCNA_00784at 846.963 kb on + strand, within CCNA_00784at 846.963 kb on + strand, within CCNA_00784at 846.966 kb on - strand, within CCNA_00784at 846.966 kb on - strand, within CCNA_00784at 846.971 kb on - strand, within CCNA_00784at 846.971 kb on - strand, within CCNA_00784at 846.971 kb on - strand, within CCNA_00784at 846.971 kb on - strand, within CCNA_00784at 847.032 kb on - strand, within CCNA_00784at 847.032 kb on - strand, within CCNA_00784at 847.041 kb on - strand, within CCNA_00784at 847.050 kb on + strand, within CCNA_00784at 847.052 kb on + strand, within CCNA_00784at 847.060 kb on - strand, within CCNA_00784at 847.066 kb on - strand, within CCNA_00784at 847.066 kb on - strand, within CCNA_00784at 847.068 kb on - strand, within CCNA_00784at 847.095 kb on + strand, within CCNA_00784at 847.137 kb on + strand, within CCNA_00784at 847.149 kb on + strand, within CCNA_00784at 847.154 kb on + strand, within CCNA_00784at 847.154 kb on + strand, within CCNA_00784at 847.160 kb on + strand, within CCNA_00784at 847.161 kb on + strand, within CCNA_00784at 847.161 kb on + strand, within CCNA_00784at 847.169 kb on - strand, within CCNA_00784at 847.180 kb on - strand, within CCNA_00784at 847.230 kb on + strand, within CCNA_00784at 847.230 kb on + strand, within CCNA_00784at 847.230 kb on + strand, within CCNA_00784at 847.230 kb on + strand, within CCNA_00784at 847.235 kb on + strand, within CCNA_00784at 847.243 kb on - strand, within CCNA_00784at 847.253 kb on - strand, within CCNA_00784at 847.253 kb on - strand, within CCNA_00784at 847.259 kb on + strand, within CCNA_00784at 847.266 kb on + strand, within CCNA_00784at 847.314 kb on - strand, within CCNA_00784at 847.321 kb on + strand, within CCNA_00784at 847.321 kb on + strand, within CCNA_00784at 847.329 kb on - strand, within CCNA_00784at 847.329 kb on - strand, within CCNA_00784at 847.372 kb on - strand, within CCNA_00784at 847.372 kb on - strand, within CCNA_00784at 847.426 kb on + strand, within CCNA_00784at 847.426 kb on + strand, within CCNA_00784at 847.426 kb on + strand, within CCNA_00784at 847.428 kb on - strand, within CCNA_00784at 847.434 kb on - strand, within CCNA_00784at 847.434 kb on - strand, within CCNA_00784at 847.434 kb on - strandat 847.434 kb on - strand, within CCNA_00784at 847.525 kb on + strand, within CCNA_00784at 847.561 kb on + strand, within CCNA_00784at 847.561 kb on + strand, within CCNA_00784at 847.561 kb on + strand, within CCNA_00784at 847.561 kb on + strand, within CCNA_00784at 847.561 kb on + strand, within CCNA_00784at 847.562 kb on - strand, within CCNA_00784at 847.562 kb on - strand, within CCNA_00784at 847.569 kb on - strand, within CCNA_00784at 847.604 kb on + strand, within CCNA_00784at 847.628 kb on + strand, within CCNA_00784at 847.655 kb on + strand, within CCNA_00784at 847.676 kb on - strand, within CCNA_00784at 847.678 kb on + strand, within CCNA_00784at 847.697 kb on + strand, within CCNA_00784at 847.741 kb on - strand, within CCNA_00784at 847.768 kb on - strand, within CCNA_00784at 847.780 kb on - strand, within CCNA_00784at 847.780 kb on - strand, within CCNA_00784at 847.782 kb on + strandat 847.782 kb on + strandat 847.790 kb on - strandat 847.790 kb on - strandat 847.790 kb on - strandat 847.818 kb on + strandat 847.818 kb on + strandat 847.852 kb on + strandat 847.871 kb on - strandat 847.871 kb on - strandat 847.887 kb on - strandat 847.891 kb on - strandat 847.909 kb on + strandat 847.965 kb on + strandat 847.970 kb on + strandat 847.978 kb on - strandat 847.978 kb on - strandat 847.978 kb on - strandat 847.978 kb on - strandat 847.985 kb on - strandat 848.035 kb on + strandat 848.035 kb on + strandat 848.035 kb on + strandat 848.043 kb on - strandat 848.043 kb on - strandat 848.043 kb on - strandat 848.051 kb on - strandat 848.055 kb on + strandat 848.092 kb on + strandat 848.092 kb on + strandat 848.100 kb on - strandat 848.116 kb on - strandat 848.180 kb on - strandat 848.180 kb on - strandat 848.182 kb on - strandat 848.215 kb on - strandat 848.215 kb on - strandat 848.285 kb on + strandat 848.285 kb on + strandat 848.293 kb on - strandat 848.411 kb on + strand, within CCNA_00785at 848.423 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.434 kb on + strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.442 kb on - strand, within CCNA_00785at 848.454 kb on + strand, within CCNA_00785at 848.462 kb on - strand, within CCNA_00785at 848.489 kb on + strand, within CCNA_00785at 848.492 kb on - strand, within CCNA_00785at 848.510 kb on - strand, within CCNA_00785at 848.600 kb on + strand, within CCNA_00785at 848.600 kb on + strand, within CCNA_00785at 848.603 kb on - strand, within CCNA_00785at 848.633 kb on + strand, within CCNA_00785at 848.696 kb on - strand, within CCNA_00785at 848.815 kb on + strand, within CCNA_00785at 848.830 kb on + strand, within CCNA_00785at 848.833 kb on - strand, within CCNA_00785at 848.841 kb on + strand, within CCNA_00785at 848.841 kb on + strand, within CCNA_00785at 848.867 kb on - strand, within CCNA_00785at 848.875 kb on + strand, within CCNA_00785

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C
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845,683 + CCNA_00783 0.62 -0.0
845,691 - CCNA_00783 0.63 -3.0
845,719 - CCNA_00783 0.64 -1.8
845,719 - CCNA_00783 0.64 +1.2
845,738 + CCNA_00783 0.65 +1.9
845,738 + CCNA_00783 0.65 +2.0
845,739 - CCNA_00783 0.65 -1.2
845,746 - CCNA_00783 0.66 -1.9
845,755 + CCNA_00783 0.66 -1.7
845,785 + CCNA_00783 0.68 +0.7
845,785 + CCNA_00783 0.68 -0.2
845,793 - CCNA_00783 0.68 +0.4
845,793 - CCNA_00783 0.68 -0.7
845,793 - CCNA_00783 0.68 -0.6
845,793 - CCNA_00783 0.68 -2.0
845,802 - CCNA_00783 0.68 +3.0
845,821 + CCNA_00783 0.69 -0.0
845,887 + CCNA_00783 0.73 -0.9
845,920 + CCNA_00783 0.74 +2.0
845,920 + CCNA_00783 0.74 -2.5
845,988 - CCNA_00783 0.78 -0.5
846,056 - CCNA_00783 0.81 -3.5
846,058 + CCNA_00783 0.81 +2.4
846,058 + CCNA_00783 0.81 -1.8
846,058 + CCNA_00783 0.81 +0.7
846,058 + CCNA_00783 0.81 -1.1
846,058 + CCNA_00783 0.81 -3.9
846,058 + CCNA_00783 0.81 -1.1
846,058 + CCNA_00783 0.81 +2.0
846,058 + CCNA_00783 0.81 +0.1
846,058 + CCNA_00783 0.81 +0.1
846,077 + CCNA_00783 0.82 -0.0
846,093 + CCNA_00783 0.83 -2.3
846,093 + CCNA_00783 0.83 -1.6
846,103 + -2.7
846,111 - CCNA_00783 0.84 -0.2
846,111 - CCNA_00783 0.84 +0.6
846,138 - CCNA_00783 0.85 -1.1
846,148 - CCNA_00783 0.86 -0.4
846,148 - CCNA_00783 0.86 +2.0
846,208 + CCNA_00783 0.89 -2.4
846,208 + CCNA_00783 0.89 -1.6
846,208 + CCNA_00783 0.89 -0.3
846,216 - CCNA_00783 0.89 +0.6
846,216 - CCNA_00783 0.89 +2.0
846,216 - CCNA_00783 0.89 -0.6
846,242 - -2.3
846,277 + +2.0
846,293 - -1.1
846,340 + -2.2
846,348 + -3.7
846,351 - -0.3
846,399 + -0.8
846,399 + -1.3
846,406 - +1.0
846,406 - -1.9
846,419 + +2.0
846,419 + -2.3
846,419 + -1.0
846,427 - -0.3
846,443 + -1.6
846,443 + -0.7
846,443 + -0.0
846,451 - +1.6
846,451 - -0.8
846,461 - -0.6
846,509 + -0.8
846,509 + -1.8
846,517 - +1.0
846,517 - +2.0
846,524 + +2.0
846,525 + +0.7
846,525 + -0.3
846,532 - +2.0
846,532 - -1.7
846,533 - -1.6
846,533 - -1.1
846,578 + -2.1
846,616 + -2.5
846,616 + +1.0
846,649 - -1.8
846,722 + -3.3
846,744 + -3.3
846,754 + -1.9
846,805 - CCNA_00784 0.10 -2.4
846,806 - CCNA_00784 0.10 -1.2
846,814 - CCNA_00784 0.11 -3.3
846,828 - CCNA_00784 0.12 -2.9
846,837 - CCNA_00784 0.13 -0.3
846,842 + CCNA_00784 0.13 -1.0
846,857 + CCNA_00784 0.14 -0.8
846,865 - CCNA_00784 0.15 -0.1
846,908 + CCNA_00784 0.19 -1.1
846,916 - -1.0
846,918 + CCNA_00784 0.19 -2.1
846,963 + CCNA_00784 0.23 -3.4
846,963 + CCNA_00784 0.23 -1.5
846,963 + CCNA_00784 0.23 -1.0
846,963 + CCNA_00784 0.23 -2.6
846,963 + CCNA_00784 0.23 -1.5
846,963 + CCNA_00784 0.23 -0.3
846,963 + CCNA_00784 0.23 -2.0
846,963 + CCNA_00784 0.23 -2.1
846,966 - CCNA_00784 0.23 -1.3
846,966 - CCNA_00784 0.23 -2.3
846,971 - CCNA_00784 0.24 -1.9
846,971 - CCNA_00784 0.24 +3.0
846,971 - CCNA_00784 0.24 +0.4
846,971 - CCNA_00784 0.24 -2.3
847,032 - CCNA_00784 0.29 -2.7
847,032 - CCNA_00784 0.29 -2.4
847,041 - CCNA_00784 0.29 -0.3
847,050 + CCNA_00784 0.30 -1.7
847,052 + CCNA_00784 0.30 +2.0
847,060 - CCNA_00784 0.31 -2.5
847,066 - CCNA_00784 0.31 -2.0
847,066 - CCNA_00784 0.31 -1.9
847,068 - CCNA_00784 0.32 -0.6
847,095 + CCNA_00784 0.34 -1.7
847,137 + CCNA_00784 0.37 -3.1
847,149 + CCNA_00784 0.38 -0.6
847,154 + CCNA_00784 0.39 -4.0
847,154 + CCNA_00784 0.39 -2.1
847,160 + CCNA_00784 0.39 -0.6
847,161 + CCNA_00784 0.39 +2.0
847,161 + CCNA_00784 0.39 -3.2
847,169 - CCNA_00784 0.40 +0.3
847,180 - CCNA_00784 0.41 -3.1
847,230 + CCNA_00784 0.45 -2.0
847,230 + CCNA_00784 0.45 -0.8
847,230 + CCNA_00784 0.45 -1.3
847,230 + CCNA_00784 0.45 +0.3
847,235 + CCNA_00784 0.45 -3.0
847,243 - CCNA_00784 0.46 -3.4
847,253 - CCNA_00784 0.47 -1.2
847,253 - CCNA_00784 0.47 +0.4
847,259 + CCNA_00784 0.47 -0.4
847,266 + CCNA_00784 0.48 -3.0
847,314 - CCNA_00784 0.52 -2.9
847,321 + CCNA_00784 0.52 -1.5
847,321 + CCNA_00784 0.52 -2.5
847,329 - CCNA_00784 0.53 -2.7
847,329 - CCNA_00784 0.53 -0.8
847,372 - CCNA_00784 0.56 -1.3
847,372 - CCNA_00784 0.56 -1.5
847,426 + CCNA_00784 0.61 -5.8
847,426 + CCNA_00784 0.61 -2.9
847,426 + CCNA_00784 0.61 -3.0
847,428 - CCNA_00784 0.61 +2.0
847,434 - CCNA_00784 0.62 +1.0
847,434 - CCNA_00784 0.62 -1.5
847,434 - -1.2
847,434 - CCNA_00784 0.62 +1.0
847,525 + CCNA_00784 0.69 -2.3
847,561 + CCNA_00784 0.72 -1.4
847,561 + CCNA_00784 0.72 -3.3
847,561 + CCNA_00784 0.72 -1.8
847,561 + CCNA_00784 0.72 -0.3
847,561 + CCNA_00784 0.72 -1.3
847,562 - CCNA_00784 0.72 -1.3
847,562 - CCNA_00784 0.72 -1.3
847,569 - CCNA_00784 0.73 -2.5
847,604 + CCNA_00784 0.75 -3.2
847,628 + CCNA_00784 0.77 -3.0
847,655 + CCNA_00784 0.80 -1.6
847,676 - CCNA_00784 0.81 -3.7
847,678 + CCNA_00784 0.81 -0.4
847,697 + CCNA_00784 0.83 -2.4
847,741 - CCNA_00784 0.87 -0.5
847,768 - CCNA_00784 0.89 -2.8
847,780 - CCNA_00784 0.90 -1.4
847,780 - CCNA_00784 0.90 -0.6
847,782 + -1.0
847,782 + -1.7
847,790 - -2.9
847,790 - -0.8
847,790 - -1.5
847,818 + -1.7
847,818 + -0.9
847,852 + -4.9
847,871 - +0.4
847,871 - -3.0
847,887 - +1.7
847,891 - -0.7
847,909 + -0.3
847,965 + -3.3
847,970 + -0.6
847,978 - -0.6
847,978 - -1.7
847,978 - -0.3
847,978 - -0.3
847,985 - -0.9
848,035 + +0.5
848,035 + -3.2
848,035 + +1.4
848,043 - -0.1
848,043 - -1.0
848,043 - -0.7
848,051 - +0.5
848,055 + +2.0
848,092 + +0.9
848,092 + -0.3
848,100 - -2.0
848,116 - -1.5
848,180 - +0.0
848,180 - +0.9
848,182 - +0.0
848,215 - -2.0
848,215 - -2.3
848,285 + +0.7
848,285 + -1.7
848,293 - -1.2
848,411 + CCNA_00785 0.14 +0.2
848,423 + CCNA_00785 0.15 -0.1
848,434 + CCNA_00785 0.16 +0.2
848,434 + CCNA_00785 0.16 -0.7
848,434 + CCNA_00785 0.16 -0.8
848,434 + CCNA_00785 0.16 +1.4
848,434 + CCNA_00785 0.16 -0.3
848,434 + CCNA_00785 0.16 +0.9
848,434 + CCNA_00785 0.16 +0.2
848,434 + CCNA_00785 0.16 -3.3
848,434 + CCNA_00785 0.16 -0.4
848,434 + CCNA_00785 0.16 -0.6
848,434 + CCNA_00785 0.16 +0.7
848,442 - CCNA_00785 0.16 -0.7
848,442 - CCNA_00785 0.16 -0.2
848,442 - CCNA_00785 0.16 +0.4
848,442 - CCNA_00785 0.16 +1.3
848,442 - CCNA_00785 0.16 -1.2
848,442 - CCNA_00785 0.16 -1.4
848,442 - CCNA_00785 0.16 -1.5
848,442 - CCNA_00785 0.16 -0.3
848,442 - CCNA_00785 0.16 -2.0
848,442 - CCNA_00785 0.16 -1.7
848,442 - CCNA_00785 0.16 -1.2
848,454 + CCNA_00785 0.17 -1.6
848,462 - CCNA_00785 0.17 -0.6
848,489 + CCNA_00785 0.19 +0.5
848,492 - CCNA_00785 0.19 -2.5
848,510 - CCNA_00785 0.20 -1.2
848,600 + CCNA_00785 0.25 -2.0
848,600 + CCNA_00785 0.25 +0.2
848,603 - CCNA_00785 0.25 -1.3
848,633 + CCNA_00785 0.27 -1.0
848,696 - CCNA_00785 0.30 +0.4
848,815 + CCNA_00785 0.37 -0.6
848,830 + CCNA_00785 0.38 +1.0
848,833 - CCNA_00785 0.38 -0.7
848,841 + CCNA_00785 0.39 -0.3
848,841 + CCNA_00785 0.39 -1.0
848,867 - CCNA_00785 0.40 +0.3
848,875 + CCNA_00785 0.40 +1.1

Or see this region's nucleotide sequence