Experiment: PYE 0.5x 4C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00413 and CCNA_00414 are separated by 20 nucleotides CCNA_00414 and CCNA_00415 are separated by 258 nucleotides CCNA_00415 and CCNA_00416 are separated by 140 nucleotides CCNA_00416 and CCNA_00417 are separated by 3 nucleotides
CCNA_00413: CCNA_00413 - poly(A) polymerase/tRNA-nucleotidyltransferase, at 426,379 to 427,632
_00413
CCNA_00414: CCNA_00414 - type 1 glutamine amidotransferase (GATase1) domain protein, at 427,653 to 428,354
_00414
CCNA_00415: CCNA_00415 - hypothetical protein, at 428,613 to 429,584
_00415
CCNA_00416: CCNA_00416 - hypothetical protein, at 429,725 to 430,123
_00416
CCNA_00417: CCNA_00417 - hypothetical protein, at 430,127 to 430,498
_00417
Position (kb) 428
429
430 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 427.617 kb on + strand at 427.617 kb on + strand at 427.625 kb on - strand at 427.625 kb on - strand at 427.625 kb on - strand at 427.625 kb on - strand at 427.631 kb on - strand at 427.693 kb on + strand at 427.703 kb on + strand at 427.739 kb on + strand, within CCNA_00414 at 427.744 kb on + strand, within CCNA_00414 at 427.781 kb on - strand, within CCNA_00414 at 427.844 kb on + strand, within CCNA_00414 at 427.859 kb on + strand, within CCNA_00414 at 427.859 kb on + strand, within CCNA_00414 at 427.867 kb on - strand, within CCNA_00414 at 427.867 kb on - strand, within CCNA_00414 at 427.867 kb on - strand, within CCNA_00414 at 427.867 kb on - strand, within CCNA_00414 at 427.925 kb on - strand, within CCNA_00414 at 427.927 kb on + strand, within CCNA_00414 at 427.940 kb on + strand, within CCNA_00414 at 427.948 kb on - strand, within CCNA_00414 at 427.968 kb on + strand, within CCNA_00414 at 427.979 kb on + strand, within CCNA_00414 at 427.985 kb on + strand, within CCNA_00414 at 427.985 kb on + strand, within CCNA_00414 at 427.985 kb on + strand, within CCNA_00414 at 427.985 kb on + strand, within CCNA_00414 at 428.014 kb on - strand, within CCNA_00414 at 428.014 kb on - strand, within CCNA_00414 at 428.073 kb on + strand, within CCNA_00414 at 428.078 kb on + strand, within CCNA_00414 at 428.078 kb on + strand, within CCNA_00414 at 428.078 kb on + strand, within CCNA_00414 at 428.086 kb on - strand, within CCNA_00414 at 428.093 kb on - strand, within CCNA_00414 at 428.119 kb on - strand, within CCNA_00414 at 428.181 kb on - strand, within CCNA_00414 at 428.225 kb on - strand, within CCNA_00414 at 428.230 kb on - strand, within CCNA_00414 at 428.241 kb on + strand, within CCNA_00414 at 428.243 kb on + strand, within CCNA_00414 at 428.243 kb on + strand, within CCNA_00414 at 428.243 kb on + strand, within CCNA_00414 at 428.244 kb on + strand, within CCNA_00414 at 428.244 kb on + strand, within CCNA_00414 at 428.251 kb on - strand, within CCNA_00414 at 428.252 kb on - strand, within CCNA_00414 at 428.279 kb on - strand, within CCNA_00414 at 428.280 kb on + strand, within CCNA_00414 at 428.328 kb on - strand at 428.342 kb on + strand at 428.343 kb on + strand at 428.343 kb on + strand at 428.349 kb on + strand at 428.384 kb on + strand at 428.385 kb on + strand at 428.385 kb on + strand at 428.385 kb on + strand at 428.390 kb on + strand at 428.393 kb on - strand at 428.393 kb on - strand at 428.398 kb on - strand at 428.431 kb on + strand at 428.454 kb on + strand at 428.507 kb on - strand at 428.530 kb on - strand at 428.569 kb on + strand at 428.569 kb on + strand at 428.577 kb on - strand at 428.582 kb on - strand at 428.591 kb on - strand at 428.593 kb on + strand at 428.593 kb on + strand at 428.601 kb on - strand at 428.625 kb on - strand at 428.646 kb on - strand at 428.667 kb on + strand at 428.672 kb on + strand at 428.675 kb on - strand at 428.695 kb on + strand at 428.703 kb on - strand at 428.723 kb on - strand, within CCNA_00415 at 428.723 kb on - strand, within CCNA_00415 at 428.774 kb on + strand, within CCNA_00415 at 428.779 kb on + strand, within CCNA_00415 at 428.786 kb on + strand, within CCNA_00415 at 428.860 kb on + strand, within CCNA_00415 at 428.885 kb on - strand, within CCNA_00415 at 428.898 kb on - strand, within CCNA_00415 at 428.975 kb on - strand, within CCNA_00415 at 428.976 kb on + strand, within CCNA_00415 at 428.976 kb on + strand, within CCNA_00415 at 428.976 kb on + strand, within CCNA_00415 at 428.984 kb on - strand, within CCNA_00415 at 428.984 kb on - strand, within CCNA_00415 at 428.984 kb on - strand, within CCNA_00415 at 428.984 kb on - strand, within CCNA_00415 at 428.995 kb on + strand, within CCNA_00415 at 429.000 kb on + strand, within CCNA_00415 at 429.003 kb on - strand, within CCNA_00415 at 429.008 kb on - strand, within CCNA_00415 at 429.012 kb on + strand, within CCNA_00415 at 429.020 kb on - strand, within CCNA_00415 at 429.030 kb on - strand, within CCNA_00415 at 429.031 kb on - strand, within CCNA_00415 at 429.032 kb on + strand, within CCNA_00415 at 429.062 kb on - strand, within CCNA_00415 at 429.113 kb on + strand, within CCNA_00415 at 429.179 kb on - strand, within CCNA_00415 at 429.179 kb on - strand, within CCNA_00415 at 429.206 kb on - strand, within CCNA_00415 at 429.266 kb on - strand, within CCNA_00415 at 429.269 kb on - strand, within CCNA_00415 at 429.329 kb on + strand, within CCNA_00415 at 429.336 kb on + strand, within CCNA_00415 at 429.355 kb on + strand, within CCNA_00415 at 429.407 kb on - strand, within CCNA_00415 at 429.452 kb on + strand, within CCNA_00415 at 429.475 kb on + strand, within CCNA_00415 at 429.492 kb on - strand at 429.499 kb on + strand at 429.526 kb on - strand at 429.550 kb on + strand at 429.553 kb on - strand at 429.564 kb on + strand at 429.579 kb on + strand at 429.579 kb on + strand at 429.579 kb on + strand at 429.587 kb on - strand at 429.587 kb on - strand at 429.587 kb on - strand at 429.602 kb on - strand at 429.618 kb on - strand at 429.645 kb on - strand at 429.663 kb on - strand at 429.677 kb on - strand at 429.708 kb on + strand at 429.716 kb on - strand at 429.731 kb on - strand at 429.735 kb on - strand at 429.779 kb on - strand, within CCNA_00416 at 429.827 kb on - strand, within CCNA_00416 at 429.845 kb on + strand, within CCNA_00416 at 429.872 kb on + strand, within CCNA_00416 at 429.907 kb on - strand, within CCNA_00416 at 429.917 kb on - strand, within CCNA_00416 at 429.929 kb on - strand, within CCNA_00416 at 429.931 kb on + strand, within CCNA_00416 at 429.931 kb on + strand, within CCNA_00416 at 429.956 kb on + strand, within CCNA_00416 at 429.961 kb on - strand, within CCNA_00416 at 429.961 kb on - strand, within CCNA_00416 at 429.962 kb on - strand, within CCNA_00416 at 429.962 kb on - strand, within CCNA_00416 at 429.974 kb on - strand, within CCNA_00416 at 429.974 kb on - strand, within CCNA_00416 at 429.976 kb on + strand, within CCNA_00416 at 429.976 kb on + strand, within CCNA_00416 at 429.984 kb on - strand, within CCNA_00416 at 430.009 kb on - strand, within CCNA_00416 at 430.025 kb on + strand, within CCNA_00416 at 430.025 kb on + strand, within CCNA_00416 at 430.033 kb on - strand, within CCNA_00416 at 430.051 kb on - strand, within CCNA_00416 at 430.066 kb on - strand, within CCNA_00416 at 430.067 kb on - strand, within CCNA_00416 at 430.074 kb on + strand, within CCNA_00416 at 430.081 kb on - strand, within CCNA_00416 at 430.085 kb on + strand at 430.103 kb on + strand at 430.124 kb on + strand at 430.132 kb on - strand at 430.133 kb on - strand at 430.133 kb on - strand at 430.147 kb on + strand at 430.147 kb on - strand at 430.147 kb on - strand at 430.152 kb on + strand at 430.152 kb on + strand at 430.152 kb on + strand at 430.157 kb on + strand at 430.160 kb on - strand at 430.160 kb on - strand at 430.160 kb on - strand at 430.160 kb on - strand at 430.160 kb on - strand at 430.160 kb on - strand at 430.207 kb on + strand, within CCNA_00417 at 430.207 kb on + strand, within CCNA_00417 at 430.207 kb on - strand, within CCNA_00417 at 430.209 kb on - strand, within CCNA_00417 at 430.249 kb on - strand, within CCNA_00417 at 430.256 kb on + strand, within CCNA_00417 at 430.263 kb on + strand, within CCNA_00417 at 430.263 kb on + strand at 430.266 kb on - strand, within CCNA_00417 at 430.269 kb on - strand, within CCNA_00417 at 430.271 kb on - strand, within CCNA_00417 at 430.299 kb on - strand, within CCNA_00417 at 430.315 kb on + strand, within CCNA_00417 at 430.319 kb on - strand, within CCNA_00417 at 430.361 kb on + strand, within CCNA_00417 at 430.374 kb on - strand, within CCNA_00417 at 430.385 kb on + strand, within CCNA_00417 at 430.436 kb on + strand, within CCNA_00417 at 430.436 kb on + strand, within CCNA_00417 at 430.444 kb on - strand, within CCNA_00417 at 430.486 kb on - strand at 430.501 kb on - strand at 430.510 kb on + strand at 430.548 kb on - strand at 430.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C remove 427,617 + +1.6 427,617 + +0.4 427,625 - -0.6 427,625 - +0.6 427,625 - -1.0 427,625 - -0.7 427,631 - +0.7 427,693 + +0.5 427,703 + -0.2 427,739 + CCNA_00414 0.12 -0.4 427,744 + CCNA_00414 0.13 -0.7 427,781 - CCNA_00414 0.18 -2.2 427,844 + CCNA_00414 0.27 -0.5 427,859 + CCNA_00414 0.29 +0.0 427,859 + CCNA_00414 0.29 +1.0 427,867 - CCNA_00414 0.30 +1.3 427,867 - CCNA_00414 0.30 -0.2 427,867 - CCNA_00414 0.30 +0.4 427,867 - CCNA_00414 0.30 -1.2 427,925 - CCNA_00414 0.39 +0.7 427,927 + CCNA_00414 0.39 +0.0 427,940 + CCNA_00414 0.41 +0.9 427,948 - CCNA_00414 0.42 +1.7 427,968 + CCNA_00414 0.45 -0.0 427,979 + CCNA_00414 0.46 -0.3 427,985 + CCNA_00414 0.47 +0.3 427,985 + CCNA_00414 0.47 +1.4 427,985 + CCNA_00414 0.47 +0.2 427,985 + CCNA_00414 0.47 -0.2 428,014 - CCNA_00414 0.51 +0.1 428,014 - CCNA_00414 0.51 -1.3 428,073 + CCNA_00414 0.60 +0.9 428,078 + CCNA_00414 0.61 -0.3 428,078 + CCNA_00414 0.61 +0.1 428,078 + CCNA_00414 0.61 -0.7 428,086 - CCNA_00414 0.62 +1.4 428,093 - CCNA_00414 0.63 -1.5 428,119 - CCNA_00414 0.66 -1.2 428,181 - CCNA_00414 0.75 +1.3 428,225 - CCNA_00414 0.81 +1.9 428,230 - CCNA_00414 0.82 -1.1 428,241 + CCNA_00414 0.84 -2.2 428,243 + CCNA_00414 0.84 +1.1 428,243 + CCNA_00414 0.84 +0.6 428,243 + CCNA_00414 0.84 +0.7 428,244 + CCNA_00414 0.84 +0.5 428,244 + CCNA_00414 0.84 -4.0 428,251 - CCNA_00414 0.85 -2.4 428,252 - CCNA_00414 0.85 -0.2 428,279 - CCNA_00414 0.89 -0.6 428,280 + CCNA_00414 0.89 +1.1 428,328 - -1.6 428,342 + +0.0 428,343 + +1.1 428,343 + +0.5 428,349 + -0.6 428,384 + +0.5 428,385 + -0.2 428,385 + +0.7 428,385 + -0.7 428,390 + +0.9 428,393 - -0.1 428,393 - +2.4 428,398 - -1.1 428,431 + -2.1 428,454 + -1.4 428,507 - +0.4 428,530 - +0.6 428,569 + +0.9 428,569 + +0.1 428,577 - -1.0 428,582 - +1.1 428,591 - +1.6 428,593 + +0.1 428,593 + -1.3 428,601 - +0.8 428,625 - +0.1 428,646 - +0.5 428,667 + -1.9 428,672 + -1.8 428,675 - +0.2 428,695 + +0.1 428,703 - +0.8 428,723 - CCNA_00415 0.11 +0.6 428,723 - CCNA_00415 0.11 +2.1 428,774 + CCNA_00415 0.17 +0.1 428,779 + CCNA_00415 0.17 -0.6 428,786 + CCNA_00415 0.18 -2.0 428,860 + CCNA_00415 0.25 +1.7 428,885 - CCNA_00415 0.28 +0.9 428,898 - CCNA_00415 0.29 +1.1 428,975 - CCNA_00415 0.37 -0.3 428,976 + CCNA_00415 0.37 -0.7 428,976 + CCNA_00415 0.37 -1.5 428,976 + CCNA_00415 0.37 -1.7 428,984 - CCNA_00415 0.38 +1.0 428,984 - CCNA_00415 0.38 -1.2 428,984 - CCNA_00415 0.38 +1.3 428,984 - CCNA_00415 0.38 -1.0 428,995 + CCNA_00415 0.39 -0.8 429,000 + CCNA_00415 0.40 -0.0 429,003 - CCNA_00415 0.40 -1.5 429,008 - CCNA_00415 0.41 -0.8 429,012 + CCNA_00415 0.41 -0.9 429,020 - CCNA_00415 0.42 -0.1 429,030 - CCNA_00415 0.43 +0.4 429,031 - CCNA_00415 0.43 -0.2 429,032 + CCNA_00415 0.43 -1.3 429,062 - CCNA_00415 0.46 -1.6 429,113 + CCNA_00415 0.51 -2.5 429,179 - CCNA_00415 0.58 -0.0 429,179 - CCNA_00415 0.58 +0.8 429,206 - CCNA_00415 0.61 -0.5 429,266 - CCNA_00415 0.67 -1.2 429,269 - CCNA_00415 0.67 -1.5 429,329 + CCNA_00415 0.74 -2.4 429,336 + CCNA_00415 0.74 -2.0 429,355 + CCNA_00415 0.76 -0.9 429,407 - CCNA_00415 0.82 -0.5 429,452 + CCNA_00415 0.86 -0.6 429,475 + CCNA_00415 0.89 +0.8 429,492 - +0.2 429,499 + -2.2 429,526 - -0.9 429,550 + +0.1 429,553 - +0.5 429,564 + +0.0 429,579 + -0.4 429,579 + -0.3 429,579 + -0.2 429,587 - +0.5 429,587 - -0.6 429,587 - +0.6 429,602 - +0.8 429,618 - +0.5 429,645 - +1.5 429,663 - -1.9 429,677 - +0.2 429,708 + -2.8 429,716 - +0.2 429,731 - +0.3 429,735 - +0.4 429,779 - CCNA_00416 0.14 -1.3 429,827 - CCNA_00416 0.26 +0.8 429,845 + CCNA_00416 0.30 -2.2 429,872 + CCNA_00416 0.37 -1.6 429,907 - CCNA_00416 0.46 -0.2 429,917 - CCNA_00416 0.48 +0.7 429,929 - CCNA_00416 0.51 -0.6 429,931 + CCNA_00416 0.52 -1.5 429,931 + CCNA_00416 0.52 -0.1 429,956 + CCNA_00416 0.58 +0.7 429,961 - CCNA_00416 0.59 -0.6 429,961 - CCNA_00416 0.59 -1.5 429,962 - CCNA_00416 0.59 +2.0 429,962 - CCNA_00416 0.59 -0.4 429,974 - CCNA_00416 0.62 -1.5 429,974 - CCNA_00416 0.62 +1.5 429,976 + CCNA_00416 0.63 +1.9 429,976 + CCNA_00416 0.63 -1.1 429,984 - CCNA_00416 0.65 -0.1 430,009 - CCNA_00416 0.71 +0.1 430,025 + CCNA_00416 0.75 -1.1 430,025 + CCNA_00416 0.75 -0.3 430,033 - CCNA_00416 0.77 -2.1 430,051 - CCNA_00416 0.82 +1.5 430,066 - CCNA_00416 0.85 -1.9 430,067 - CCNA_00416 0.86 +0.4 430,074 + CCNA_00416 0.87 -0.6 430,081 - CCNA_00416 0.89 -0.8 430,085 + -0.3 430,103 + -0.4 430,124 + -0.3 430,132 - -0.6 430,133 - -0.4 430,133 - +2.2 430,147 + -0.9 430,147 - +0.0 430,147 - -0.7 430,152 + -0.3 430,152 + -3.5 430,152 + -1.6 430,157 + -1.5 430,160 - -0.3 430,160 - -0.1 430,160 - -0.4 430,160 - -0.9 430,160 - +0.2 430,160 - +0.1 430,207 + CCNA_00417 0.22 -2.6 430,207 + CCNA_00417 0.22 -1.6 430,207 - CCNA_00417 0.22 -0.2 430,209 - CCNA_00417 0.22 -0.8 430,249 - CCNA_00417 0.33 +0.1 430,256 + CCNA_00417 0.35 -2.6 430,263 + CCNA_00417 0.37 -2.1 430,263 + -2.6 430,266 - CCNA_00417 0.37 +0.3 430,269 - CCNA_00417 0.38 +1.1 430,271 - CCNA_00417 0.39 -0.3 430,299 - CCNA_00417 0.46 -1.0 430,315 + CCNA_00417 0.51 -1.5 430,319 - CCNA_00417 0.52 +0.6 430,361 + CCNA_00417 0.63 -2.0 430,374 - CCNA_00417 0.66 +1.7 430,385 + CCNA_00417 0.69 +0.3 430,436 + CCNA_00417 0.83 -3.2 430,436 + CCNA_00417 0.83 -0.3 430,444 - CCNA_00417 0.85 +2.0 430,486 - -1.1 430,501 - -0.1 430,510 + -0.4 430,548 - -1.1 430,577 + -1.0
Or see this region's nucleotide sequence