Experiment: PYE 0.5x 4C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00275 and CCNA_00276 are separated by 89 nucleotides CCNA_00276 and CCNA_00277 are separated by 64 nucleotides
CCNA_00275: CCNA_00275 - transposase, DDE family, at 288,082 to 289,527
_00275
CCNA_00276: CCNA_00276 - hypothetical protein, at 289,617 to 290,096
_00276
CCNA_00277: CCNA_00277 - succinyl-diaminopimelate desuccinylase, at 290,161 to 291,321
_00277
Position (kb) 289
290
291 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 289.540 kb on + strand at 289.585 kb on + strand at 289.585 kb on + strand at 289.585 kb on + strand at 289.585 kb on + strand at 289.593 kb on - strand at 289.593 kb on - strand at 289.593 kb on - strand at 289.593 kb on - strand at 289.594 kb on - strand at 289.629 kb on + strand at 289.639 kb on + strand at 289.659 kb on - strand at 289.666 kb on - strand, within CCNA_00276 at 289.675 kb on - strand, within CCNA_00276 at 289.699 kb on - strand, within CCNA_00276 at 289.720 kb on - strand, within CCNA_00276 at 289.720 kb on - strand, within CCNA_00276 at 289.722 kb on + strand, within CCNA_00276 at 289.768 kb on - strand, within CCNA_00276 at 289.787 kb on - strand, within CCNA_00276 at 289.798 kb on + strand, within CCNA_00276 at 289.818 kb on - strand, within CCNA_00276 at 289.818 kb on - strand, within CCNA_00276 at 289.858 kb on + strand, within CCNA_00276 at 289.887 kb on - strand, within CCNA_00276 at 289.888 kb on + strand, within CCNA_00276 at 289.936 kb on - strand, within CCNA_00276 at 289.936 kb on - strand, within CCNA_00276 at 289.976 kb on + strand, within CCNA_00276 at 289.984 kb on - strand, within CCNA_00276 at 290.000 kb on + strand, within CCNA_00276 at 290.000 kb on + strand, within CCNA_00276 at 290.008 kb on - strand, within CCNA_00276 at 290.030 kb on + strand, within CCNA_00276 at 290.033 kb on - strand, within CCNA_00276 at 290.039 kb on + strand, within CCNA_00276 at 290.039 kb on + strand, within CCNA_00276 at 290.044 kb on + strand, within CCNA_00276 at 290.047 kb on - strand, within CCNA_00276 at 290.047 kb on - strand, within CCNA_00276 at 290.052 kb on - strand at 290.072 kb on - strand at 290.081 kb on + strand at 290.099 kb on - strand at 290.145 kb on + strand at 290.145 kb on + strand at 290.171 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C remove 289,540 + +0.7 289,585 + -3.1 289,585 + -1.6 289,585 + +1.8 289,585 + -1.0 289,593 - -0.0 289,593 - +1.5 289,593 - -1.5 289,593 - -0.6 289,594 - -1.8 289,629 + +1.8 289,639 + +0.8 289,659 - +1.2 289,666 - CCNA_00276 0.10 +0.2 289,675 - CCNA_00276 0.12 -0.8 289,699 - CCNA_00276 0.17 -0.6 289,720 - CCNA_00276 0.21 -3.3 289,720 - CCNA_00276 0.21 -1.7 289,722 + CCNA_00276 0.22 -0.8 289,768 - CCNA_00276 0.31 -0.4 289,787 - CCNA_00276 0.35 +0.5 289,798 + CCNA_00276 0.38 -0.3 289,818 - CCNA_00276 0.42 -1.4 289,818 - CCNA_00276 0.42 +1.5 289,858 + CCNA_00276 0.50 -0.9 289,887 - CCNA_00276 0.56 -1.3 289,888 + CCNA_00276 0.56 -1.0 289,936 - CCNA_00276 0.66 -1.2 289,936 - CCNA_00276 0.66 -3.2 289,976 + CCNA_00276 0.75 +0.6 289,984 - CCNA_00276 0.76 -0.2 290,000 + CCNA_00276 0.80 -1.4 290,000 + CCNA_00276 0.80 -0.1 290,008 - CCNA_00276 0.81 -1.6 290,030 + CCNA_00276 0.86 -0.4 290,033 - CCNA_00276 0.87 -1.0 290,039 + CCNA_00276 0.88 -1.5 290,039 + CCNA_00276 0.88 +2.6 290,044 + CCNA_00276 0.89 -3.0 290,047 - CCNA_00276 0.90 -3.1 290,047 - CCNA_00276 0.90 -1.2 290,052 - -3.4 290,072 - +0.2 290,081 + +0.6 290,099 - +0.5 290,145 + +1.1 290,145 + +0.6 290,171 - -0.1
Or see this region's nucleotide sequence