Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0439

Experiment: MoYLS4 with Tungstate 4mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0438 and DVU0439 are separated by 34 nucleotidesDVU0439 and DVU0440 are separated by 468 nucleotides DVU0438: DVU0438 - AcrB/AcrD/AcrF family protein (TIGR), at 492,212 to 495,337 DVU0438 DVU0439: DVU0439 - YCII-related domain protein (TIGR), at 495,372 to 495,662 DVU0439 DVU0440: DVU0440 - conserved hypothetical protein (TIGR), at 496,131 to 497,462 DVU0440 Position (kb) 495 496Strain fitness (log2 ratio) -2 -1 0 1 2at 494.434 kb on + strand, within DVU0438at 494.443 kb on - strand, within DVU0438at 494.464 kb on - strand, within DVU0438at 494.483 kb on - strand, within DVU0438at 494.579 kb on - strand, within DVU0438at 494.623 kb on + strand, within DVU0438at 494.639 kb on - strand, within DVU0438at 494.643 kb on + strand, within DVU0438at 494.643 kb on + strand, within DVU0438at 494.643 kb on + strand, within DVU0438at 494.643 kb on + strand, within DVU0438at 494.643 kb on + strand, within DVU0438at 494.651 kb on - strand, within DVU0438at 494.651 kb on - strand, within DVU0438at 494.651 kb on - strand, within DVU0438at 494.698 kb on - strand, within DVU0438at 494.703 kb on - strand, within DVU0438at 494.722 kb on - strand, within DVU0438at 494.750 kb on + strand, within DVU0438at 494.757 kb on + strand, within DVU0438at 494.771 kb on + strand, within DVU0438at 494.776 kb on + strand, within DVU0438at 494.784 kb on - strand, within DVU0438at 494.784 kb on - strand, within DVU0438at 494.794 kb on + strand, within DVU0438at 494.802 kb on - strand, within DVU0438at 494.852 kb on - strand, within DVU0438at 494.866 kb on + strand, within DVU0438at 494.886 kb on - strand, within DVU0438at 494.917 kb on - strand, within DVU0438at 494.936 kb on - strand, within DVU0438at 494.943 kb on - strand, within DVU0438at 495.041 kb on - strandat 495.041 kb on - strandat 495.069 kb on - strandat 495.131 kb on + strandat 495.190 kb on - strandat 495.220 kb on + strandat 495.235 kb on + strandat 495.243 kb on - strandat 495.243 kb on - strandat 495.243 kb on - strandat 495.308 kb on + strandat 495.420 kb on + strand, within DVU0439at 495.421 kb on - strand, within DVU0439at 495.484 kb on - strand, within DVU0439at 495.496 kb on + strand, within DVU0439at 495.515 kb on - strand, within DVU0439at 495.581 kb on + strand, within DVU0439at 495.581 kb on + strand, within DVU0439at 495.866 kb on - strandat 495.918 kb on + strandat 495.921 kb on + strandat 495.949 kb on + strandat 495.957 kb on - strandat 496.018 kb on + strandat 496.023 kb on + strandat 496.026 kb on - strandat 496.031 kb on - strandat 496.031 kb on - strandat 496.180 kb on + strandat 496.183 kb on - strandat 496.194 kb on - strandat 496.199 kb on + strandat 496.226 kb on + strandat 496.234 kb on - strandat 496.255 kb on - strandat 496.265 kb on + strand, within DVU0440at 496.275 kb on + strand, within DVU0440at 496.313 kb on + strand, within DVU0440at 496.345 kb on + strand, within DVU0440at 496.352 kb on - strand, within DVU0440at 496.368 kb on - strand, within DVU0440at 496.405 kb on - strand, within DVU0440at 496.418 kb on - strand, within DVU0440at 496.422 kb on + strand, within DVU0440at 496.468 kb on - strand, within DVU0440at 496.483 kb on - strand, within DVU0440at 496.505 kb on - strand, within DVU0440at 496.505 kb on - strand, within DVU0440at 496.505 kb on - strand, within DVU0440at 496.507 kb on + strand, within DVU0440at 496.512 kb on + strand, within DVU0440at 496.515 kb on - strand, within DVU0440at 496.550 kb on - strand, within DVU0440at 496.609 kb on + strand, within DVU0440

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
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494,434 + DVU0438 0.71 +0.7
494,443 - DVU0438 0.71 +2.1
494,464 - DVU0438 0.72 +0.9
494,483 - DVU0438 0.73 +0.4
494,579 - DVU0438 0.76 +0.3
494,623 + DVU0438 0.77 +1.7
494,639 - DVU0438 0.78 -0.5
494,643 + DVU0438 0.78 +1.5
494,643 + DVU0438 0.78 +1.2
494,643 + DVU0438 0.78 +1.4
494,643 + DVU0438 0.78 +1.4
494,643 + DVU0438 0.78 +1.0
494,651 - DVU0438 0.78 +0.7
494,651 - DVU0438 0.78 +0.9
494,651 - DVU0438 0.78 +1.0
494,698 - DVU0438 0.80 +2.3
494,703 - DVU0438 0.80 +2.3
494,722 - DVU0438 0.80 +0.6
494,750 + DVU0438 0.81 +2.7
494,757 + DVU0438 0.81 +0.9
494,771 + DVU0438 0.82 +0.1
494,776 + DVU0438 0.82 +1.9
494,784 - DVU0438 0.82 +1.1
494,784 - DVU0438 0.82 +1.0
494,794 + DVU0438 0.83 +2.6
494,802 - DVU0438 0.83 +1.7
494,852 - DVU0438 0.84 +1.1
494,866 + DVU0438 0.85 +1.0
494,886 - DVU0438 0.86 +0.0
494,917 - DVU0438 0.87 -0.8
494,936 - DVU0438 0.87 +0.9
494,943 - DVU0438 0.87 -0.0
495,041 - +2.5
495,041 - +2.2
495,069 - +1.1
495,131 + +1.7
495,190 - +1.8
495,220 + +2.2
495,235 + -0.4
495,243 - +1.1
495,243 - +1.7
495,243 - +1.0
495,308 + +0.2
495,420 + DVU0439 0.16 -1.7
495,421 - DVU0439 0.17 +0.5
495,484 - DVU0439 0.38 -0.3
495,496 + DVU0439 0.43 -0.0
495,515 - DVU0439 0.49 -0.7
495,581 + DVU0439 0.72 +0.6
495,581 + DVU0439 0.72 -1.2
495,866 - +0.2
495,918 + -0.2
495,921 + -0.3
495,949 + +1.7
495,957 - +0.6
496,018 + -0.5
496,023 + -0.7
496,026 - -0.1
496,031 - -0.4
496,031 - -0.7
496,180 + -0.1
496,183 - +0.4
496,194 - -0.4
496,199 + -0.3
496,226 + -0.8
496,234 - +1.3
496,255 - -0.1
496,265 + DVU0440 0.10 -0.2
496,275 + DVU0440 0.11 -1.8
496,313 + DVU0440 0.14 +0.4
496,345 + DVU0440 0.16 +0.5
496,352 - DVU0440 0.17 -0.5
496,368 - DVU0440 0.18 -0.4
496,405 - DVU0440 0.21 +0.1
496,418 - DVU0440 0.22 -2.1
496,422 + DVU0440 0.22 -2.1
496,468 - DVU0440 0.25 +0.1
496,483 - DVU0440 0.26 -1.3
496,505 - DVU0440 0.28 +0.7
496,505 - DVU0440 0.28 -2.3
496,505 - DVU0440 0.28 +0.7
496,507 + DVU0440 0.28 +0.7
496,512 + DVU0440 0.29 -0.6
496,515 - DVU0440 0.29 -0.3
496,550 - DVU0440 0.31 +0.9
496,609 + DVU0440 0.36 -0.1

Or see this region's nucleotide sequence