Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0127

Experiment: MoYLS4 with Tungstate 4mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntb3486 and DVU0127 are separated by 3 nucleotidesDVU0127 and DVU0128 are separated by 215 nucleotides DVU0126: b3486 - ABC transporter, ATP-binding protein (TIGR), at 159,343 to 162,858 b3486 DVU0127: DVU0127 - membrane protein, putative (TIGR), at 162,862 to 163,974 DVU0127 DVU0128: DVU0128 - membrane protein, putative (TIGR), at 164,190 to 165,248 DVU0128 Position (kb) 162 163 164Strain fitness (log2 ratio) -2 -1 0 1 2 3at 161.935 kb on + strand, within b3486at 162.060 kb on + strand, within b3486at 162.068 kb on + strand, within b3486at 162.102 kb on - strand, within b3486at 162.113 kb on + strand, within b3486at 162.128 kb on + strand, within b3486at 162.183 kb on + strand, within b3486at 162.211 kb on - strand, within b3486at 162.211 kb on - strand, within b3486at 162.227 kb on + strand, within b3486at 162.306 kb on + strand, within b3486at 162.323 kb on + strand, within b3486at 162.428 kb on - strand, within b3486at 162.446 kb on + strand, within b3486at 162.446 kb on + strand, within b3486at 162.454 kb on - strand, within b3486at 162.554 kb on + strandat 162.564 kb on + strandat 162.564 kb on + strandat 162.636 kb on - strandat 162.664 kb on - strandat 162.673 kb on + strandat 162.692 kb on - strandat 162.702 kb on - strandat 162.741 kb on - strandat 162.821 kb on + strandat 162.903 kb on + strandat 162.905 kb on + strandat 162.915 kb on + strandat 162.915 kb on + strandat 162.923 kb on - strandat 162.923 kb on - strandat 162.960 kb on + strandat 163.057 kb on + strand, within DVU0127at 163.076 kb on - strand, within DVU0127at 163.133 kb on - strand, within DVU0127at 163.150 kb on - strand, within DVU0127at 163.154 kb on + strand, within DVU0127at 163.159 kb on + strand, within DVU0127at 163.160 kb on - strand, within DVU0127at 163.277 kb on - strand, within DVU0127at 163.303 kb on + strand, within DVU0127at 163.303 kb on + strand, within DVU0127at 163.303 kb on + strand, within DVU0127at 163.325 kb on - strand, within DVU0127at 163.364 kb on + strand, within DVU0127at 163.364 kb on + strand, within DVU0127at 163.372 kb on - strand, within DVU0127at 163.434 kb on + strand, within DVU0127at 163.471 kb on - strand, within DVU0127at 163.486 kb on - strand, within DVU0127at 163.496 kb on - strand, within DVU0127at 163.511 kb on - strand, within DVU0127at 163.574 kb on - strand, within DVU0127at 163.578 kb on + strand, within DVU0127at 163.591 kb on - strand, within DVU0127at 163.719 kb on - strand, within DVU0127at 163.759 kb on - strand, within DVU0127at 163.791 kb on - strand, within DVU0127at 163.818 kb on + strand, within DVU0127at 163.825 kb on + strand, within DVU0127at 163.826 kb on - strand, within DVU0127at 163.885 kb on + strandat 163.966 kb on - strandat 163.972 kb on - strandat 164.034 kb on + strandat 164.034 kb on + strandat 164.042 kb on - strandat 164.241 kb on + strandat 164.249 kb on - strandat 164.272 kb on + strandat 164.282 kb on + strandat 164.290 kb on - strandat 164.443 kb on - strand, within DVU0128at 164.443 kb on - strand, within DVU0128at 164.457 kb on + strand, within DVU0128at 164.460 kb on - strand, within DVU0128at 164.495 kb on - strand, within DVU0128at 164.501 kb on + strand, within DVU0128at 164.501 kb on + strand, within DVU0128at 164.501 kb on + strand, within DVU0128at 164.514 kb on + strand, within DVU0128at 164.527 kb on + strand, within DVU0128at 164.593 kb on + strand, within DVU0128at 164.742 kb on - strand, within DVU0128at 164.859 kb on - strand, within DVU0128

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
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161,935 + b3486 DVU0126 0.74 +1.5
162,060 + b3486 DVU0126 0.77 +0.0
162,068 + b3486 DVU0126 0.78 +0.5
162,102 - b3486 DVU0126 0.78 -0.8
162,113 + b3486 DVU0126 0.79 -0.6
162,128 + b3486 DVU0126 0.79 +0.2
162,183 + b3486 DVU0126 0.81 -0.6
162,211 - b3486 DVU0126 0.82 +0.6
162,211 - b3486 DVU0126 0.82 -0.0
162,227 + b3486 DVU0126 0.82 -0.0
162,306 + b3486 DVU0126 0.84 -0.2
162,323 + b3486 DVU0126 0.85 +1.3
162,428 - b3486 DVU0126 0.88 -0.7
162,446 + b3486 DVU0126 0.88 +0.6
162,446 + b3486 DVU0126 0.88 -0.7
162,454 - b3486 DVU0126 0.88 -0.0
162,554 + +1.5
162,564 + -0.1
162,564 + -0.3
162,636 - -0.6
162,664 - -0.0
162,673 + -0.3
162,692 - -0.6
162,702 - -0.1
162,741 - +3.2
162,821 + -0.2
162,903 + -0.1
162,905 + -0.0
162,915 + -0.5
162,915 + +1.3
162,923 - -0.4
162,923 - +0.1
162,960 + +0.1
163,057 + DVU0127 0.18 -0.9
163,076 - DVU0127 0.19 +0.0
163,133 - DVU0127 0.24 -0.3
163,150 - DVU0127 0.26 -0.4
163,154 + DVU0127 0.26 -2.6
163,159 + DVU0127 0.27 -0.3
163,160 - DVU0127 0.27 -1.2
163,277 - DVU0127 0.37 -0.3
163,303 + DVU0127 0.40 -0.5
163,303 + DVU0127 0.40 -0.1
163,303 + DVU0127 0.40 +0.8
163,325 - DVU0127 0.42 +0.1
163,364 + DVU0127 0.45 +0.1
163,364 + DVU0127 0.45 -0.5
163,372 - DVU0127 0.46 -0.1
163,434 + DVU0127 0.51 +0.6
163,471 - DVU0127 0.55 -0.0
163,486 - DVU0127 0.56 -1.3
163,496 - DVU0127 0.57 +0.3
163,511 - DVU0127 0.58 -0.4
163,574 - DVU0127 0.64 -0.8
163,578 + DVU0127 0.64 +0.2
163,591 - DVU0127 0.65 -0.7
163,719 - DVU0127 0.77 +0.2
163,759 - DVU0127 0.81 +0.6
163,791 - DVU0127 0.83 -0.7
163,818 + DVU0127 0.86 -0.3
163,825 + DVU0127 0.87 -0.2
163,826 - DVU0127 0.87 -0.8
163,885 + +2.6
163,966 - -0.2
163,972 - +0.3
164,034 + +1.0
164,034 + -0.8
164,042 - +0.3
164,241 + +0.3
164,249 - -2.0
164,272 + +0.1
164,282 + +0.4
164,290 - -0.4
164,443 - DVU0128 0.24 -0.5
164,443 - DVU0128 0.24 +0.3
164,457 + DVU0128 0.25 -0.5
164,460 - DVU0128 0.25 +2.6
164,495 - DVU0128 0.29 +0.6
164,501 + DVU0128 0.29 +0.1
164,501 + DVU0128 0.29 +0.1
164,501 + DVU0128 0.29 -1.4
164,514 + DVU0128 0.31 +2.3
164,527 + DVU0128 0.32 -0.1
164,593 + DVU0128 0.38 +2.6
164,742 - DVU0128 0.52 -0.3
164,859 - DVU0128 0.63 +1.9

Or see this region's nucleotide sequence