Experiment: MoYLS4 with Tungstate 4mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fumC and DVU0081 are separated by 152 nucleotides DVU0081 and DVU0082 are separated by 93 nucleotides
DVU0080: fumC - fumarate hydratase, class II (TIGR), at 97,000 to 98,406
fumC
DVU0081: DVU0081 - sensory box histidine kinase/response regulator (TIGR), at 98,559 to 100,289
DVU0081
DVU0082: DVU0082 - conserved hypothetical protein (TIGR), at 100,383 to 101,975
DVU0082
Position (kb) 98
99
100
101 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 97.586 kb on + strand, within fumC at 97.671 kb on - strand, within fumC at 97.702 kb on - strand, within fumC at 97.720 kb on + strand, within fumC at 97.759 kb on + strand, within fumC at 97.788 kb on + strand, within fumC at 97.824 kb on - strand, within fumC at 97.828 kb on - strand, within fumC at 97.838 kb on + strand, within fumC at 97.935 kb on - strand, within fumC at 97.982 kb on + strand, within fumC at 97.985 kb on - strand, within fumC at 97.990 kb on - strand, within fumC at 97.990 kb on - strand, within fumC at 97.994 kb on + strand, within fumC at 97.999 kb on + strand, within fumC at 97.999 kb on + strand, within fumC at 98.007 kb on - strand, within fumC at 98.007 kb on - strand, within fumC at 98.022 kb on + strand, within fumC at 98.029 kb on + strand, within fumC at 98.030 kb on - strand, within fumC at 98.030 kb on - strand, within fumC at 98.034 kb on + strand, within fumC at 98.037 kb on - strand, within fumC at 98.147 kb on - strand, within fumC at 98.229 kb on + strand, within fumC at 98.236 kb on + strand, within fumC at 98.237 kb on - strand, within fumC at 98.254 kb on + strand, within fumC at 98.327 kb on + strand at 98.350 kb on + strand at 98.358 kb on - strand at 98.358 kb on - strand at 98.364 kb on + strand at 98.369 kb on + strand at 98.369 kb on + strand at 98.396 kb on + strand at 98.408 kb on - strand at 98.419 kb on + strand at 98.419 kb on + strand at 98.434 kb on + strand at 98.436 kb on + strand at 98.446 kb on + strand at 98.454 kb on - strand at 98.491 kb on - strand at 98.506 kb on - strand at 98.529 kb on + strand at 98.545 kb on - strand at 98.551 kb on - strand at 98.553 kb on - strand at 98.563 kb on - strand at 98.700 kb on - strand at 98.713 kb on - strand at 98.729 kb on - strand at 98.751 kb on - strand, within DVU0081 at 98.788 kb on - strand, within DVU0081 at 98.809 kb on - strand, within DVU0081 at 98.891 kb on - strand, within DVU0081 at 98.901 kb on - strand, within DVU0081 at 99.218 kb on + strand, within DVU0081 at 99.229 kb on + strand, within DVU0081 at 99.239 kb on + strand, within DVU0081 at 99.246 kb on + strand, within DVU0081 at 99.247 kb on - strand, within DVU0081 at 99.303 kb on + strand, within DVU0081 at 99.303 kb on + strand, within DVU0081 at 99.303 kb on + strand, within DVU0081 at 99.311 kb on - strand, within DVU0081 at 99.311 kb on - strand, within DVU0081 at 99.311 kb on - strand, within DVU0081 at 99.314 kb on + strand, within DVU0081 at 99.337 kb on - strand, within DVU0081 at 99.337 kb on - strand, within DVU0081 at 99.408 kb on + strand, within DVU0081 at 99.473 kb on + strand, within DVU0081 at 99.498 kb on + strand, within DVU0081 at 99.506 kb on - strand, within DVU0081 at 99.506 kb on - strand, within DVU0081 at 99.575 kb on + strand, within DVU0081 at 99.580 kb on + strand, within DVU0081 at 99.583 kb on - strand, within DVU0081 at 99.583 kb on - strand, within DVU0081 at 99.588 kb on - strand, within DVU0081 at 99.615 kb on + strand, within DVU0081 at 99.668 kb on + strand, within DVU0081 at 99.669 kb on + strand, within DVU0081 at 99.669 kb on + strand, within DVU0081 at 99.698 kb on - strand, within DVU0081 at 99.712 kb on + strand, within DVU0081 at 99.735 kb on - strand, within DVU0081 at 99.794 kb on + strand, within DVU0081 at 99.802 kb on - strand, within DVU0081 at 99.853 kb on - strand, within DVU0081 at 99.908 kb on - strand, within DVU0081 at 99.933 kb on - strand, within DVU0081 at 100.002 kb on + strand, within DVU0081 at 100.010 kb on - strand, within DVU0081 at 100.010 kb on - strand, within DVU0081 at 100.032 kb on - strand, within DVU0081 at 100.075 kb on + strand, within DVU0081 at 100.169 kb on - strand at 100.198 kb on + strand at 100.219 kb on + strand at 100.237 kb on - strand at 100.242 kb on - strand at 100.267 kb on - strand at 100.279 kb on + strand at 100.353 kb on - strand at 100.397 kb on + strand at 100.405 kb on - strand at 100.525 kb on + strand at 100.525 kb on + strand at 100.525 kb on + strand at 100.533 kb on - strand at 100.533 kb on - strand at 100.533 kb on - strand at 100.545 kb on - strand, within DVU0082 at 100.545 kb on - strand, within DVU0082 at 100.545 kb on - strand, within DVU0082 at 100.624 kb on - strand, within DVU0082 at 100.636 kb on + strand, within DVU0082 at 100.726 kb on - strand, within DVU0082 at 100.737 kb on - strand, within DVU0082 at 100.785 kb on + strand, within DVU0082 at 100.785 kb on + strand, within DVU0082 at 100.790 kb on + strand, within DVU0082 at 100.793 kb on - strand, within DVU0082 at 100.846 kb on + strand, within DVU0082 at 100.854 kb on - strand, within DVU0082 at 100.909 kb on + strand, within DVU0082 at 100.909 kb on + strand, within DVU0082 at 100.909 kb on + strand, within DVU0082 at 100.917 kb on - strand, within DVU0082 at 100.924 kb on + strand, within DVU0082 at 100.989 kb on - strand, within DVU0082 at 101.006 kb on + strand, within DVU0082 at 101.006 kb on + strand, within DVU0082 at 101.009 kb on - strand, within DVU0082 at 101.058 kb on + strand, within DVU0082 at 101.066 kb on - strand, within DVU0082 at 101.066 kb on - strand, within DVU0082 at 101.174 kb on + strand, within DVU0082 at 101.197 kb on - strand, within DVU0082 at 101.201 kb on + strand, within DVU0082 at 101.210 kb on + strand, within DVU0082 at 101.220 kb on + strand, within DVU0082 at 101.220 kb on + strand, within DVU0082 at 101.234 kb on + strand, within DVU0082 at 101.242 kb on - strand, within DVU0082
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM remove 97,586 + fumC DVU0080 0.42 -0.1 97,671 - fumC DVU0080 0.48 -1.5 97,702 - fumC DVU0080 0.50 -0.1 97,720 + fumC DVU0080 0.51 -1.1 97,759 + fumC DVU0080 0.54 +0.1 97,788 + fumC DVU0080 0.56 -0.3 97,824 - fumC DVU0080 0.59 -0.5 97,828 - fumC DVU0080 0.59 +0.0 97,838 + fumC DVU0080 0.60 +1.6 97,935 - fumC DVU0080 0.66 +0.3 97,982 + fumC DVU0080 0.70 -1.2 97,985 - fumC DVU0080 0.70 +1.8 97,990 - fumC DVU0080 0.70 -1.2 97,990 - fumC DVU0080 0.70 -0.8 97,994 + fumC DVU0080 0.71 +0.0 97,999 + fumC DVU0080 0.71 -1.4 97,999 + fumC DVU0080 0.71 -0.1 98,007 - fumC DVU0080 0.72 +2.6 98,007 - fumC DVU0080 0.72 -0.1 98,022 + fumC DVU0080 0.73 -1.8 98,029 + fumC DVU0080 0.73 -0.1 98,030 - fumC DVU0080 0.73 -2.1 98,030 - fumC DVU0080 0.73 -0.6 98,034 + fumC DVU0080 0.73 -0.5 98,037 - fumC DVU0080 0.74 -0.3 98,147 - fumC DVU0080 0.82 +0.6 98,229 + fumC DVU0080 0.87 -0.0 98,236 + fumC DVU0080 0.88 -0.7 98,237 - fumC DVU0080 0.88 -0.7 98,254 + fumC DVU0080 0.89 +0.9 98,327 + +0.5 98,350 + -0.4 98,358 - +0.3 98,358 - +0.4 98,364 + +1.9 98,369 + -0.4 98,369 + +0.1 98,396 + -0.3 98,408 - -0.4 98,419 + -0.8 98,419 + +1.3 98,434 + +0.4 98,436 + -0.2 98,446 + -1.6 98,454 - -0.9 98,491 - +0.0 98,506 - -0.1 98,529 + -0.3 98,545 - -1.0 98,551 - -0.2 98,553 - +0.5 98,563 - -3.2 98,700 - +0.3 98,713 - +0.8 98,729 - -0.5 98,751 - DVU0081 0.11 -1.2 98,788 - DVU0081 0.13 +0.2 98,809 - DVU0081 0.14 -0.4 98,891 - DVU0081 0.19 +2.6 98,901 - DVU0081 0.20 +0.2 99,218 + DVU0081 0.38 +3.1 99,229 + DVU0081 0.39 -0.3 99,239 + DVU0081 0.39 +0.1 99,246 + DVU0081 0.40 -0.3 99,247 - DVU0081 0.40 +1.2 99,303 + DVU0081 0.43 +0.9 99,303 + DVU0081 0.43 -0.6 99,303 + DVU0081 0.43 +0.6 99,311 - DVU0081 0.43 -0.8 99,311 - DVU0081 0.43 -0.3 99,311 - DVU0081 0.43 -0.2 99,314 + DVU0081 0.44 +1.1 99,337 - DVU0081 0.45 -1.2 99,337 - DVU0081 0.45 +0.1 99,408 + DVU0081 0.49 +0.2 99,473 + DVU0081 0.53 -0.7 99,498 + DVU0081 0.54 -0.1 99,506 - DVU0081 0.55 +0.8 99,506 - DVU0081 0.55 -1.8 99,575 + DVU0081 0.59 +0.3 99,580 + DVU0081 0.59 -0.4 99,583 - DVU0081 0.59 -0.5 99,583 - DVU0081 0.59 -0.1 99,588 - DVU0081 0.59 +1.6 99,615 + DVU0081 0.61 +0.2 99,668 + DVU0081 0.64 +1.5 99,669 + DVU0081 0.64 +0.0 99,669 + DVU0081 0.64 +1.6 99,698 - DVU0081 0.66 +1.3 99,712 + DVU0081 0.67 -0.3 99,735 - DVU0081 0.68 +0.5 99,794 + DVU0081 0.71 -0.5 99,802 - DVU0081 0.72 +0.1 99,853 - DVU0081 0.75 +1.7 99,908 - DVU0081 0.78 -1.8 99,933 - DVU0081 0.79 +1.1 100,002 + DVU0081 0.83 +1.2 100,010 - DVU0081 0.84 +0.1 100,010 - DVU0081 0.84 +1.0 100,032 - DVU0081 0.85 -0.7 100,075 + DVU0081 0.88 +0.2 100,169 - +1.7 100,198 + -0.5 100,219 + +2.1 100,237 - -0.0 100,242 - +0.1 100,267 - -0.4 100,279 + -0.6 100,353 - -0.5 100,397 + +0.7 100,405 - -0.2 100,525 + +2.1 100,525 + +0.2 100,525 + -1.4 100,533 - -1.0 100,533 - -0.7 100,533 - -0.9 100,545 - DVU0082 0.10 -0.5 100,545 - DVU0082 0.10 +0.2 100,545 - DVU0082 0.10 -0.8 100,624 - DVU0082 0.15 +0.2 100,636 + DVU0082 0.16 +1.3 100,726 - DVU0082 0.22 -0.2 100,737 - DVU0082 0.22 +0.2 100,785 + DVU0082 0.25 -0.6 100,785 + DVU0082 0.25 -0.4 100,790 + DVU0082 0.26 -0.9 100,793 - DVU0082 0.26 +0.2 100,846 + DVU0082 0.29 -1.0 100,854 - DVU0082 0.30 -0.8 100,909 + DVU0082 0.33 -0.1 100,909 + DVU0082 0.33 -1.5 100,909 + DVU0082 0.33 -0.7 100,917 - DVU0082 0.34 +0.0 100,924 + DVU0082 0.34 -0.6 100,989 - DVU0082 0.38 -0.3 101,006 + DVU0082 0.39 -0.2 101,006 + DVU0082 0.39 -0.9 101,009 - DVU0082 0.39 -0.4 101,058 + DVU0082 0.42 -1.4 101,066 - DVU0082 0.43 +1.1 101,066 - DVU0082 0.43 -0.7 101,174 + DVU0082 0.50 -1.9 101,197 - DVU0082 0.51 -0.5 101,201 + DVU0082 0.51 +0.3 101,210 + DVU0082 0.52 -1.0 101,220 + DVU0082 0.53 -1.1 101,220 + DVU0082 0.53 -0.7 101,234 + DVU0082 0.53 +0.1 101,242 - DVU0082 0.54 -1.1
Or see this region's nucleotide sequence