Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2398

Experiment: MoYLS4 with Tungstate 4mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2397 and DVU2398 are separated by 206 nucleotidesDVU2398 and DVU2399 are separated by 257 nucleotides DVU2397: DVU2397 - hypothetical protein (TIGR), at 2,501,252 to 2,501,995 DVU2397 DVU2398: DVU2398 - conserved hypothetical protein (TIGR), at 2,502,202 to 2,502,693 DVU2398 DVU2399: DVU2399 - hydrogenase, putative (TIGR), at 2,502,951 to 2,503,838 DVU2399 Position (kb) 2502 2503Strain fitness (log2 ratio) -2 -1 0 1 2at 2501.248 kb on + strandat 2501.250 kb on + strandat 2501.258 kb on - strandat 2501.275 kb on - strandat 2501.286 kb on + strandat 2501.342 kb on + strand, within DVU2397at 2501.435 kb on + strand, within DVU2397at 2501.478 kb on - strand, within DVU2397at 2501.499 kb on - strand, within DVU2397at 2501.516 kb on - strand, within DVU2397at 2501.518 kb on + strand, within DVU2397at 2501.521 kb on - strand, within DVU2397at 2501.684 kb on + strand, within DVU2397at 2501.822 kb on - strand, within DVU2397at 2501.859 kb on - strand, within DVU2397at 2501.869 kb on - strand, within DVU2397at 2501.879 kb on - strand, within DVU2397at 2502.140 kb on - strandat 2502.254 kb on - strand, within DVU2398at 2502.268 kb on - strand, within DVU2398at 2502.285 kb on - strand, within DVU2398at 2502.325 kb on + strand, within DVU2398at 2502.410 kb on + strand, within DVU2398at 2502.425 kb on + strand, within DVU2398at 2502.512 kb on - strand, within DVU2398at 2502.542 kb on + strand, within DVU2398at 2502.613 kb on - strand, within DVU2398at 2502.624 kb on + strand, within DVU2398at 2502.624 kb on + strand, within DVU2398at 2502.656 kb on + strandat 2502.689 kb on + strandat 2502.745 kb on - strandat 2502.779 kb on + strandat 2502.866 kb on - strandat 2502.932 kb on + strandat 2502.937 kb on + strandat 2502.937 kb on + strandat 2502.945 kb on - strandat 2502.945 kb on - strandat 2502.980 kb on + strandat 2502.995 kb on - strandat 2502.995 kb on - strandat 2502.995 kb on - strandat 2503.081 kb on + strand, within DVU2399at 2503.177 kb on + strand, within DVU2399at 2503.185 kb on - strand, within DVU2399at 2503.330 kb on - strand, within DVU2399at 2503.330 kb on - strand, within DVU2399at 2503.347 kb on - strand, within DVU2399at 2503.347 kb on - strand, within DVU2399at 2503.349 kb on + strand, within DVU2399at 2503.349 kb on + strand, within DVU2399at 2503.374 kb on + strand, within DVU2399

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
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2,501,248 + -0.3
2,501,250 + -1.8
2,501,258 - -0.2
2,501,275 - -0.5
2,501,286 + +0.1
2,501,342 + DVU2397 0.12 +1.1
2,501,435 + DVU2397 0.25 +0.2
2,501,478 - DVU2397 0.30 -0.0
2,501,499 - DVU2397 0.33 +2.1
2,501,516 - DVU2397 0.35 -1.5
2,501,518 + DVU2397 0.36 -0.2
2,501,521 - DVU2397 0.36 +0.4
2,501,684 + DVU2397 0.58 -0.1
2,501,822 - DVU2397 0.77 -0.5
2,501,859 - DVU2397 0.82 -1.9
2,501,869 - DVU2397 0.83 -0.9
2,501,879 - DVU2397 0.84 -0.2
2,502,140 - +0.6
2,502,254 - DVU2398 0.11 -0.2
2,502,268 - DVU2398 0.13 +0.3
2,502,285 - DVU2398 0.17 +0.1
2,502,325 + DVU2398 0.25 -1.7
2,502,410 + DVU2398 0.42 -1.3
2,502,425 + DVU2398 0.45 -1.0
2,502,512 - DVU2398 0.63 -1.3
2,502,542 + DVU2398 0.69 +0.0
2,502,613 - DVU2398 0.84 -0.8
2,502,624 + DVU2398 0.86 -0.2
2,502,624 + DVU2398 0.86 -0.4
2,502,656 + -0.7
2,502,689 + -0.2
2,502,745 - -0.0
2,502,779 + -0.5
2,502,866 - +0.8
2,502,932 + +0.3
2,502,937 + -0.4
2,502,937 + +0.3
2,502,945 - +1.1
2,502,945 - -0.1
2,502,980 + +1.0
2,502,995 - +0.5
2,502,995 - +0.6
2,502,995 - +0.6
2,503,081 + DVU2399 0.15 +1.9
2,503,177 + DVU2399 0.25 +0.9
2,503,185 - DVU2399 0.26 +0.7
2,503,330 - DVU2399 0.43 +1.0
2,503,330 - DVU2399 0.43 +0.6
2,503,347 - DVU2399 0.45 +0.9
2,503,347 - DVU2399 0.45 +0.8
2,503,349 + DVU2399 0.45 +0.6
2,503,349 + DVU2399 0.45 +0.8
2,503,374 + DVU2399 0.48 +0.6

Or see this region's nucleotide sequence