Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2026

Experiment: MoYLS4 with Tungstate 4mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2025 and DVU2026 are separated by 11 nucleotidesDVU2026 and DORF15085 are separated by 20 nucleotidesDORF15085 and DVU2028 are separated by 82 nucleotidesDVU2028 and DVU2029 are separated by 44 nucleotides DVU2025: DVU2025 - conserved hypothetical protein (TIGR), at 2,106,300 to 2,109,851 DVU2025 DVU2026: DVU2026 - conserved hypothetical protein (TIGR), at 2,109,863 to 2,110,453 DVU2026 DORF15085: DORF15085 - no description, at 2,110,474 to 2,111,085 DORF15085 DVU2028: DVU2028 - conserved domain protein (TIGR), at 2,111,168 to 2,111,395 DVU2028 DVU2029: DVU2029 - ISDvu2, transposase OrfA (TIGR), at 2,111,440 to 2,111,838 DVU2029 Position (kb) 2109 2110 2111Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2108.868 kb on + strand, within DVU2025at 2108.969 kb on - strand, within DVU2025at 2109.063 kb on + strand, within DVU2025at 2109.063 kb on + strand, within DVU2025at 2109.071 kb on - strand, within DVU2025at 2109.121 kb on + strand, within DVU2025at 2109.127 kb on + strand, within DVU2025at 2109.263 kb on - strand, within DVU2025at 2109.289 kb on + strand, within DVU2025at 2109.303 kb on + strand, within DVU2025at 2109.449 kb on - strand, within DVU2025at 2109.478 kb on + strand, within DVU2025at 2109.527 kb on - strandat 2109.527 kb on - strandat 2109.567 kb on - strandat 2109.577 kb on - strandat 2109.902 kb on - strandat 2109.947 kb on + strand, within DVU2026at 2109.947 kb on - strand, within DVU2026at 2109.958 kb on + strand, within DVU2026at 2110.169 kb on - strand, within DVU2026at 2110.179 kb on - strand, within DVU2026at 2110.293 kb on - strand, within DVU2026at 2110.417 kb on + strandat 2110.429 kb on + strandat 2111.229 kb on + strand, within DVU2028at 2111.244 kb on + strand, within DVU2028at 2111.258 kb on + strand, within DVU2028at 2111.266 kb on + strand, within DVU2028at 2111.302 kb on + strand, within DVU2028at 2111.302 kb on + strand, within DVU2028at 2111.310 kb on - strand, within DVU2028at 2111.311 kb on - strand, within DVU2028at 2111.334 kb on + strand, within DVU2028at 2111.334 kb on + strand, within DVU2028at 2111.342 kb on - strand, within DVU2028

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
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2,108,868 + DVU2025 0.72 -1.2
2,108,969 - DVU2025 0.75 -1.5
2,109,063 + DVU2025 0.78 -1.2
2,109,063 + DVU2025 0.78 -0.6
2,109,071 - DVU2025 0.78 +3.0
2,109,121 + DVU2025 0.79 -0.5
2,109,127 + DVU2025 0.80 +0.6
2,109,263 - DVU2025 0.83 -0.5
2,109,289 + DVU2025 0.84 -0.6
2,109,303 + DVU2025 0.85 -0.2
2,109,449 - DVU2025 0.89 -0.0
2,109,478 + DVU2025 0.89 -0.5
2,109,527 - -1.3
2,109,527 - -1.3
2,109,567 - +0.7
2,109,577 - +0.1
2,109,902 - -0.8
2,109,947 + DVU2026 0.14 -2.2
2,109,947 - DVU2026 0.14 -1.3
2,109,958 + DVU2026 0.16 -0.7
2,110,169 - DVU2026 0.52 -0.9
2,110,179 - DVU2026 0.53 -0.7
2,110,293 - DVU2026 0.73 -0.1
2,110,417 + -0.0
2,110,429 + -0.2
2,111,229 + DVU2028 0.27 -1.8
2,111,244 + DVU2028 0.33 -0.8
2,111,258 + DVU2028 0.39 +0.2
2,111,266 + DVU2028 0.43 +0.7
2,111,302 + DVU2028 0.59 -1.5
2,111,302 + DVU2028 0.59 -0.0
2,111,310 - DVU2028 0.62 -0.7
2,111,311 - DVU2028 0.63 +0.4
2,111,334 + DVU2028 0.73 +1.1
2,111,334 + DVU2028 0.73 -0.2
2,111,342 - DVU2028 0.76 -0.1

Or see this region's nucleotide sequence