Experiment: MoYLS4 with Tungstate 4mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU1882 and DVU1883 overlap by 4 nucleotides DVU1883 and DVU1884 are separated by 226 nucleotides DVU1884 and gatB are separated by 324 nucleotides
DVU1882: DVU1882 - HDIG domain protein (TIGR), at 1,950,678 to 1,953,038
DVU1882
DVU1883: DVU1883 - conserved hypothetical protein (TIGR), at 1,953,035 to 1,953,523
DVU1883
DVU1884: DVU1884 - methyl-accepting chemotaxis protein (TIGR), at 1,953,750 to 1,956,152
DVU1884
DVU1885: gatB - glutamyl-tRNA(Gln) amidotransferase, B subunit (TIGR), at 1,956,477 to 1,957,907
gatB
Position (kb)
1953
1954
1955
1956
1957 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1952.832 kb on - strand at 1952.832 kb on - strand at 1952.838 kb on + strand at 1952.914 kb on - strand at 1952.914 kb on - strand at 1953.633 kb on + strand at 1953.638 kb on + strand at 1953.653 kb on + strand at 1953.653 kb on + strand at 1953.738 kb on + strand at 1953.970 kb on + strand at 1954.198 kb on + strand, within DVU1884 at 1954.250 kb on + strand, within DVU1884 at 1954.297 kb on + strand, within DVU1884 at 1954.394 kb on + strand, within DVU1884 at 1954.443 kb on - strand, within DVU1884 at 1954.624 kb on + strand, within DVU1884 at 1954.624 kb on + strand, within DVU1884 at 1954.776 kb on - strand, within DVU1884 at 1954.787 kb on + strand, within DVU1884 at 1954.787 kb on + strand, within DVU1884 at 1954.795 kb on - strand, within DVU1884 at 1954.827 kb on + strand, within DVU1884 at 1954.862 kb on + strand, within DVU1884 at 1954.872 kb on + strand, within DVU1884 at 1955.058 kb on - strand, within DVU1884 at 1955.217 kb on - strand, within DVU1884 at 1955.607 kb on + strand, within DVU1884 at 1955.607 kb on + strand, within DVU1884 at 1955.653 kb on + strand, within DVU1884 at 1955.707 kb on + strand, within DVU1884 at 1955.715 kb on - strand, within DVU1884 at 1955.715 kb on - strand, within DVU1884 at 1955.717 kb on - strand, within DVU1884 at 1955.812 kb on + strand, within DVU1884 at 1955.835 kb on + strand, within DVU1884 at 1956.006 kb on - strand at 1956.062 kb on + strand at 1956.062 kb on + strand at 1956.195 kb on + strand at 1956.195 kb on + strand at 1956.195 kb on + strand at 1956.203 kb on - strand at 1956.437 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM remove 1,952,832 - +1.0 1,952,832 - -0.2 1,952,838 + +0.5 1,952,914 - -0.1 1,952,914 - -1.0 1,953,633 + -2.1 1,953,638 + -1.2 1,953,653 + +3.0 1,953,653 + -0.3 1,953,738 + -0.4 1,953,970 + +0.1 1,954,198 + DVU1884 0.19 -1.7 1,954,250 + DVU1884 0.21 -0.3 1,954,297 + DVU1884 0.23 -0.5 1,954,394 + DVU1884 0.27 +0.3 1,954,443 - DVU1884 0.29 -0.7 1,954,624 + DVU1884 0.36 -1.2 1,954,624 + DVU1884 0.36 -0.8 1,954,776 - DVU1884 0.43 +0.2 1,954,787 + DVU1884 0.43 -1.8 1,954,787 + DVU1884 0.43 -0.9 1,954,795 - DVU1884 0.43 -0.4 1,954,827 + DVU1884 0.45 +0.0 1,954,862 + DVU1884 0.46 +0.2 1,954,872 + DVU1884 0.47 -0.5 1,955,058 - DVU1884 0.54 -0.3 1,955,217 - DVU1884 0.61 -0.9 1,955,607 + DVU1884 0.77 -0.4 1,955,607 + DVU1884 0.77 -0.9 1,955,653 + DVU1884 0.79 -0.3 1,955,707 + DVU1884 0.81 +2.0 1,955,715 - DVU1884 0.82 -0.4 1,955,715 - DVU1884 0.82 -0.4 1,955,717 - DVU1884 0.82 +0.8 1,955,812 + DVU1884 0.86 -1.9 1,955,835 + DVU1884 0.87 -0.7 1,956,006 - +0.7 1,956,062 + +1.6 1,956,062 + -1.1 1,956,195 + -0.1 1,956,195 + -1.4 1,956,195 + -0.9 1,956,203 - -0.6 1,956,437 - -0.3
Or see this region's nucleotide sequence