Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0984

Experiment: MoYLS4 with Tungstate 4mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0982 and DVU0983 are separated by 1 nucleotidesDVU0983 and miaB overlap by 7 nucleotidesmiaB and DORF8626 are separated by 132 nucleotidesDORF8626 and DVU0987 are separated by 191 nucleotides DVU0982: DVU0982 - PHP domain protein (TIGR), at 1,079,062 to 1,079,721 DVU0982 DVU0983: DVU0983 - conserved hypothetical protein (TIGR), at 1,079,723 to 1,080,268 DVU0983 DVU0984: miaB - tRNA-i(6)A37 modification enzyme MiaB (TIGR), at 1,080,262 to 1,081,611 miaB DORF8626: DORF8626 - no description, at 1,081,744 to 1,081,989 DORF8626 DVU0987: DVU0987 - heavy metal-binding domain protein (TIGR), at 1,082,181 to 1,082,384 DVU0987 Position (kb) 1080 1081 1082Strain fitness (log2 ratio) -2 -1 0 1 2at 1079.282 kb on - strand, within DVU0982at 1079.339 kb on - strand, within DVU0982at 1079.374 kb on + strand, within DVU0982at 1079.422 kb on + strand, within DVU0982at 1079.431 kb on - strand, within DVU0982at 1079.555 kb on - strand, within DVU0982at 1079.656 kb on + strandat 1079.808 kb on + strand, within DVU0983at 1079.813 kb on + strand, within DVU0983at 1079.821 kb on - strand, within DVU0983at 1079.935 kb on + strand, within DVU0983at 1080.086 kb on - strand, within DVU0983at 1080.272 kb on + strandat 1080.285 kb on - strandat 1080.310 kb on - strandat 1080.334 kb on - strandat 1080.345 kb on + strandat 1080.345 kb on + strandat 1080.353 kb on - strandat 1080.381 kb on - strandat 1080.502 kb on + strand, within miaBat 1080.512 kb on + strand, within miaBat 1080.512 kb on + strand, within miaBat 1080.521 kb on + strand, within miaBat 1080.536 kb on + strand, within miaBat 1080.582 kb on + strand, within miaBat 1080.590 kb on - strand, within miaBat 1080.673 kb on - strand, within miaBat 1080.721 kb on - strand, within miaBat 1080.799 kb on + strand, within miaBat 1080.868 kb on - strand, within miaBat 1080.892 kb on - strand, within miaBat 1080.924 kb on - strand, within miaBat 1081.012 kb on + strand, within miaBat 1081.047 kb on - strand, within miaBat 1081.047 kb on - strand, within miaBat 1081.047 kb on - strand, within miaBat 1081.086 kb on + strand, within miaBat 1081.094 kb on - strand, within miaBat 1081.124 kb on + strand, within miaBat 1081.151 kb on + strand, within miaBat 1081.194 kb on - strand, within miaBat 1081.432 kb on + strand, within miaBat 1081.441 kb on - strand, within miaBat 1081.456 kb on + strand, within miaBat 1081.466 kb on + strand, within miaBat 1081.487 kb on + strandat 1081.487 kb on + strandat 1081.535 kb on - strandat 1081.598 kb on + strandat 1081.662 kb on - strandat 1081.669 kb on - strandat 1081.676 kb on + strandat 1081.800 kb on - strand, within DORF8626at 1081.806 kb on - strand, within DORF8626at 1081.859 kb on + strand, within DORF8626at 1081.869 kb on + strand, within DORF8626at 1081.869 kb on + strand, within DORF8626at 1081.874 kb on + strand, within DORF8626at 1081.877 kb on - strand, within DORF8626at 1081.877 kb on - strand, within DORF8626at 1081.877 kb on - strand, within DORF8626at 1081.877 kb on - strand, within DORF8626at 1081.879 kb on + strand, within DORF8626at 1081.887 kb on - strand, within DORF8626at 1081.944 kb on - strand, within DORF8626at 1081.965 kb on - strandat 1082.016 kb on + strandat 1082.024 kb on - strandat 1082.042 kb on - strandat 1082.065 kb on - strandat 1082.115 kb on + strandat 1082.147 kb on + strandat 1082.196 kb on - strandat 1082.196 kb on - strandat 1082.243 kb on + strand, within DVU0987at 1082.308 kb on + strand, within DVU0987at 1082.316 kb on - strand, within DVU0987at 1082.417 kb on - strandat 1082.541 kb on - strandat 1082.543 kb on + strandat 1082.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Tungstate 4mM
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1,079,282 - DVU0982 0.33 -0.7
1,079,339 - DVU0982 0.42 +0.2
1,079,374 + DVU0982 0.47 +0.0
1,079,422 + DVU0982 0.55 -0.2
1,079,431 - DVU0982 0.56 -0.1
1,079,555 - DVU0982 0.75 +0.2
1,079,656 + -0.4
1,079,808 + DVU0983 0.16 +0.5
1,079,813 + DVU0983 0.16 -1.2
1,079,821 - DVU0983 0.18 +0.2
1,079,935 + DVU0983 0.39 +0.5
1,080,086 - DVU0983 0.66 -1.7
1,080,272 + -2.5
1,080,285 - -0.8
1,080,310 - -1.0
1,080,334 - -1.8
1,080,345 + -0.4
1,080,345 + +0.7
1,080,353 - +0.3
1,080,381 - -0.4
1,080,502 + miaB DVU0984 0.18 -0.5
1,080,512 + miaB DVU0984 0.19 -0.7
1,080,512 + miaB DVU0984 0.19 -1.4
1,080,521 + miaB DVU0984 0.19 -1.0
1,080,536 + miaB DVU0984 0.20 -0.5
1,080,582 + miaB DVU0984 0.24 -1.3
1,080,590 - miaB DVU0984 0.24 -0.1
1,080,673 - miaB DVU0984 0.30 -2.4
1,080,721 - miaB DVU0984 0.34 -0.8
1,080,799 + miaB DVU0984 0.40 -1.8
1,080,868 - miaB DVU0984 0.45 -0.8
1,080,892 - miaB DVU0984 0.47 -2.6
1,080,924 - miaB DVU0984 0.49 -0.6
1,081,012 + miaB DVU0984 0.56 -1.0
1,081,047 - miaB DVU0984 0.58 -1.3
1,081,047 - miaB DVU0984 0.58 -0.6
1,081,047 - miaB DVU0984 0.58 -2.0
1,081,086 + miaB DVU0984 0.61 -0.1
1,081,094 - miaB DVU0984 0.62 -1.3
1,081,124 + miaB DVU0984 0.64 -0.4
1,081,151 + miaB DVU0984 0.66 -0.5
1,081,194 - miaB DVU0984 0.69 -0.2
1,081,432 + miaB DVU0984 0.87 -0.4
1,081,441 - miaB DVU0984 0.87 -0.9
1,081,456 + miaB DVU0984 0.88 -0.2
1,081,466 + miaB DVU0984 0.89 -0.0
1,081,487 + +1.0
1,081,487 + -0.8
1,081,535 - -1.5
1,081,598 + -0.4
1,081,662 - +0.6
1,081,669 - -1.0
1,081,676 + +1.4
1,081,800 - DORF8626 0.23 +0.1
1,081,806 - DORF8626 0.25 +0.6
1,081,859 + DORF8626 0.47 -0.4
1,081,869 + DORF8626 0.51 -0.2
1,081,869 + DORF8626 0.51 -0.4
1,081,874 + DORF8626 0.53 +0.3
1,081,877 - DORF8626 0.54 +1.0
1,081,877 - DORF8626 0.54 -0.9
1,081,877 - DORF8626 0.54 -0.4
1,081,877 - DORF8626 0.54 -0.3
1,081,879 + DORF8626 0.55 -1.5
1,081,887 - DORF8626 0.58 -1.7
1,081,944 - DORF8626 0.81 -1.2
1,081,965 - -0.5
1,082,016 + -0.5
1,082,024 - -1.0
1,082,042 - -0.0
1,082,065 - +0.2
1,082,115 + -2.2
1,082,147 + -0.2
1,082,196 - +0.6
1,082,196 - +0.6
1,082,243 + DVU0987 0.30 +1.3
1,082,308 + DVU0987 0.62 +0.5
1,082,316 - DVU0987 0.66 +1.3
1,082,417 - -0.6
1,082,541 - -2.0
1,082,543 + +1.3
1,082,551 - +2.3

Or see this region's nucleotide sequence