Experiment: Manganese (II) chloride tetrahydrate 0.00078125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4931 and Pf6N2E2_4932 overlap by 18 nucleotides Pf6N2E2_4932 and Pf6N2E2_4933 are separated by 16 nucleotides Pf6N2E2_4933 and Pf6N2E2_4934 overlap by 4 nucleotides
Pf6N2E2_4931 - 1-deoxy-D-xylulose 5-phosphate synthase (EC 2.2.1.7), at 5,683,828 to 5,685,726
_4931
Pf6N2E2_4932 - hypothetical protein, at 5,685,709 to 5,685,825
_4932
Pf6N2E2_4933 - Octaprenyl-diphosphate synthase (EC 2.5.1.-) / Dimethylallyltransferase (EC 2.5.1.1) / Geranyltranstransferase (farnesyldiphosphate synthase) (EC 2.5.1.10) / Geranylgeranyl pyrophosphate synthetase (EC 2.5.1.29), at 5,685,842 to 5,686,729
_4933
Pf6N2E2_4934 - Exodeoxyribonuclease VII small subunit (EC 3.1.11.6), at 5,686,726 to 5,686,968
_4934
Position (kb)
5685
5686 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5685.740 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.742 kb on - strand, within Pf6N2E2_4932 at 5685.746 kb on - strand, within Pf6N2E2_4932 at 5685.746 kb on - strand, within Pf6N2E2_4932 at 5685.746 kb on - strand, within Pf6N2E2_4932 at 5685.748 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.766 kb on - strand, within Pf6N2E2_4932 at 5685.821 kb on + strand at 5685.821 kb on + strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand at 5685.822 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Manganese (II) chloride tetrahydrate 0.00078125 M remove 5,685,740 - Pf6N2E2_4932 0.26 -2.3 5,685,742 - Pf6N2E2_4932 0.28 -1.8 5,685,742 - Pf6N2E2_4932 0.28 +1.1 5,685,742 - Pf6N2E2_4932 0.28 +0.1 5,685,742 - Pf6N2E2_4932 0.28 +1.3 5,685,742 - Pf6N2E2_4932 0.28 +1.2 5,685,742 - Pf6N2E2_4932 0.28 -0.4 5,685,742 - Pf6N2E2_4932 0.28 +0.6 5,685,742 - Pf6N2E2_4932 0.28 +1.8 5,685,742 - Pf6N2E2_4932 0.28 +0.3 5,685,742 - Pf6N2E2_4932 0.28 +0.8 5,685,742 - Pf6N2E2_4932 0.28 +1.8 5,685,742 - Pf6N2E2_4932 0.28 -0.9 5,685,742 - Pf6N2E2_4932 0.28 +0.4 5,685,742 - Pf6N2E2_4932 0.28 +1.2 5,685,746 - Pf6N2E2_4932 0.32 +0.9 5,685,746 - Pf6N2E2_4932 0.32 -1.2 5,685,746 - Pf6N2E2_4932 0.32 +0.6 5,685,748 - Pf6N2E2_4932 0.33 +0.5 5,685,766 - Pf6N2E2_4932 0.49 +0.3 5,685,766 - Pf6N2E2_4932 0.49 -1.4 5,685,766 - Pf6N2E2_4932 0.49 -0.7 5,685,766 - Pf6N2E2_4932 0.49 +2.1 5,685,766 - Pf6N2E2_4932 0.49 -0.4 5,685,821 + +1.6 5,685,821 + +0.2 5,685,822 - -1.3 5,685,822 - -0.7 5,685,822 - -0.3 5,685,822 - -0.2 5,685,822 - -0.7 5,685,822 - +1.0 5,685,822 - -1.2 5,685,822 - +0.0
Or see this region's nucleotide sequence